Phylogenetic analysis of the bovine parainfluenza virus type 3 from cattle herds revealing the existence of a genotype A strain in China.

Abstract:

:In 2009, a bovine parainfluenza virus (BPIV3), named as NM09, was isolated using MDBK cell culture from the nasal swabs of normal cattle in China. The NM09 isolate was characterized by RT-PCR and nucleotide sequence analysis. Its complete genome was 15,456 nucleotides in length. Similar to other sequenced PIV strains, the NM09 virus consisted of six non-overlapping genes, which were predicted to encode nine proteins with conserved and complementary 3' leader and 5' trailer regions, conserved gene starts, gene stops, and trinucleotide intergenic sequences. Nucleotide phylogenetic analysis of matrix and hemagglutinin-neuraminidase gene demonstrated that this NM09 isolate belonged to BPIV3 genotype A instead of the previously reported BPIV3 genotype C in China. It is implicated that the different genotypes A and C might coexist infection for a long time in China.

journal_name

Virus Genes

journal_title

Virus genes

authors

Wen YJ,Shi XC,Wang FX,Wang W,Zhang SQ,Li G,Song N,Chen LZ,Cheng SP,Wu H

doi

10.1007/s11262-012-0810-1

subject

Has Abstract

pub_date

2012-12-01 00:00:00

pages

542-7

issue

3

eissn

0920-8569

issn

1572-994X

journal_volume

45

pub_type

杂志文章
  • Influenza A viruses: why focusing on M2e-based universal vaccines.

    abstract::The threat of highly virulent avian influenza, such as H5N1 and swine-origin H1N1 influenza viruses, bring out an urgent need to develop a universal influenza vaccine, which may provide cross-protection against different strain of influenza A viruses. The extra-domain of influenza M2 protein (M2e), which is almost com...

    journal_title:Virus genes

    pub_type: 杂志文章,评审

    doi:10.1007/s11262-010-0547-7

    authors: Ebrahimi SM,Tebianian M

    更新日期:2011-02-01 00:00:00

  • Construction and immune response characterization of a recombinant pseudorabies virus co-expressing capsid precursor protein (P1) and a multiepitope peptide of foot-and-mouth disease virus in swine.

    abstract::Foot-and-mouth disease (FMD) is the most contagious and devastating disease of livestock. Our previous studies demonstrated that TK(-)/gG(-)/P1(+), a recombinant expressing the FMDV capsid precursor protein (P1) based on attenuated pseudorabies virus (PRV) TK(-)/gG(-), could be used as a recombinant vaccine to protect...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-008-0204-6

    authors: He Y,Qian P,Zhang K,Yao Q,Wang D,Xu Z,Wu B,Jin M,Xiao S,Chen H

    更新日期:2008-04-01 00:00:00

  • Molecular evidence for the existence of two distinct subgroups in cucumber mosaic cucumovirus.

    abstract::Infectious full-length cDNA clones from the genomic RNAs of a subgroup II cucumber mosaic cucumovirus strain (Trk7) were obtained. Sequence analysis of the whole genome revealed strong homology (99%) to the genome of Q-CMV, the only subgroup II strain whose entire genomic nucleotide sequence had been available in the ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1008016202128

    authors: Szilassy D,Salánki K,Balázs E

    更新日期:1999-01-01 00:00:00

  • Transcription analysis of porcine circovirus (PCV).

    abstract::This study focuses on gene expression of porcine circovirus (PCV) in order to identify viral genes and their corresponding mRNA transcripts. By northern blot analysis, the existence of three mRNAs could be demonstrated. Two mRNAs are encoded by the viral (-)-strand and one is encoded by the viral (+)-strand. The (+)-s...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1008022521329

    authors: Mankertz J,Buhk HJ,Blaess G,Mankertz A

    更新日期:1998-01-01 00:00:00

  • Human immunodeficiency virus type-1 Tat protein induces secretory leukocyte protease inhibitor expression in African green monkey but not human cells.

    abstract::African monkeys are resistant to HIV-1 infection due to intrinsic restriction mechanisms found in their cells. However, although they can be infected by monkey-adapted modified HIV-1 particles that are designed to overcome known restriction factors, virus numbers drop to undetectable levels in immunocompetent animals....

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-020-01731-x

    authors: Özdemir S,Şengez B,Arslanoğlu A

    更新日期:2020-04-01 00:00:00

  • Searching for a new putative cryptic virus in Pinus sylvestris L.

    abstract::Double-stranded RNAs (dsRNAs) were detected in different pine populations in Germany and Hungary. Two dsRNA species of 1.5 and 1.58 kbp, respectively, persisted in the same trees for at least 2 years and their presence was not associated with any symptoms. The dsRNAs were found to sediment in the VLP (virus-like parti...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-005-6874-4

    authors: Veliceasa D,Enünlü N,Kós PB,Köster S,Beuther E,Morgun B,Deshmukh SD,Lukács N

    更新日期:2006-04-01 00:00:00

  • Genomic characterization of Molluscum contagiosum virus type 1: identification of the repetitive DNA sequences in the viral genome.

    abstract::The genomes (188 kbp) of the prototype Molluscum contagiosum virus type 1 (MCV-1) and a variant strain (MCV-1v) were characterized by construction of the physical maps of the viral DNA for the restriction enzymes BamHI, ClaI, EcoRI, and HindIII using a defined gene library harboring the DNA sequences of the MCV-1 geno...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF00125128

    authors: Bugert J,Rösen-Wolff A,Darai G

    更新日期:1989-11-01 00:00:00

  • Host-pathogen interactome analysis of Chikungunya virus envelope proteins E1 and E2.

    abstract::The envelope proteins of Chikungunya virus (CHIKV) are known to play crucial roles in viral infection and spread. Although the role of envelope proteins in viral infection has been studied, the cellular interactors of these proteins are still elusive. In the present study, the ectodomains of CHIKV envelope proteins (E...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1161-x

    authors: Dudha N,Rana J,Rajasekharan S,Gabrani R,Gupta A,Chaudhary VK,Gupta S

    更新日期:2015-04-01 00:00:00

  • Interaction between Translocation-associated membrane protein 1 and σC protein of novel duck reovirus controls virus infectivity.

    abstract::Novel duck reovirus (NDRV), the prototype strain of the species Avian orthoreovirus (ARV), is associated with high mortality in Pekin ducklings. σC is an outer capsid protein encoded by the S1 genome segment of NDRV which mediates attachment to host cells. Our previous studies using immunoprecipitation and mass spectr...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-020-01750-8

    authors: Xiao R,Mi X,Sun J,Ding M,Li C,Zhu J,Liu G,Ma W,Zhou H,Chen Z

    更新日期:2020-06-01 00:00:00

  • Wuhan large pig roundworm virus identified in human feces in Brazil.

    abstract::We report here the complete genome sequence of a bipartite virus, herein denoted WLPRV/human/BRA/TO-34/201, from a sample collected in 2015 from a two-year-old child in Brazil presenting acute gastroenteritis. The virus has 98-99% identity (segments 2 and 1, respectively) with the Wuhan large pig roundworm virus (uncl...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-018-1557-0

    authors: Luchs A,Leal E,Komninakis SV,de Pádua Milagres FA,Brustulin R,da Aparecida Rodrigues Teles M,Gill DE,Deng X,Delwart E,Sabino EC,da Costa AC

    更新日期:2018-06-01 00:00:00

  • Effects of mutations within the SV40 large T antigen ATPase/p53 binding domain on viral replication and transformation.

    abstract::The simian virus 40 (SV40) large T antigen is a 708 amino-acid protein possessing multiple biochemical activities that play distinct roles in productive infection or virus-induced cell transformation. The carboxy-terminal portion of T antigen includes a domain that carries the nucleotide binding and ATPase activities ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1007941622680

    authors: Peden KW,Srinivasan A,Vartikar JV,Pipas JM

    更新日期:1998-01-01 00:00:00

  • Complete sequences of the neuraminidase genes of swine influenza viruses (H1N1) associated with the respiratory disease in pigs.

    abstract::The complete nucleotide sequences of neuraminidase (NA) of two swine influenza viruses (H1N1) are presented. A/Sw/Quebec/5393/91 (SwQc91) virus, associated with the chronic respiratory disease and A/Sw/ Quebec/192/81 (SwQc81) virus, associated with the acute respiratory disease, were used. The deduced amino acid seque...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1007944228967

    authors: Arora DS,Tijssen P,Dea S,Henrichon M

    更新日期:1997-01-01 00:00:00

  • Sequence analysis of porcine adenovirus serotype 5 fibre gene: evidence for recombination.

    abstract::The nucleic acid and deduced amino acid sequence of the fibre gene of the HNF-61 strain of porcine adenovirus serotype 5 (PAdV-5) was determined and compared to that of the HNF-70 strain of the same serotype (Nagy et al., J Gen Virol 82, 525-529, 2001) and also to adenovirus fibre genes from the genera Mastadenovirus ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1014580802250

    authors: Nagy M,Nagy E,Tuboly T

    更新日期:2002-03-01 00:00:00

  • Short communication: isolation and phylogenetic analysis of an avian-origin H3N2 canine influenza virus in dog shelter, China.

    abstract::A H3N2 canine influenza virus, A/canine/Guangdong/3/2011 (H3N2), was isolated from roaming dogs in rural China. Sequence and phylogenetic analysis of eight gene segments revealed that the A/canine/Guangdong/3/2011 (H3N2) was most similar to a recent H3N2 canine influenza virus isolated in cats from South Korea, which ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-013-0882-6

    authors: Su S,Yuan Z,Chen J,Xie J,Li H,Huang Z,Zhang M,Du G,Chen Z,Tu L,Zou Y,Miao J,Wang H,Jia K,Li S

    更新日期:2013-06-01 00:00:00

  • The genome sequence of an H11N2 avian influenza virus from a Thick-billed Murre (Uria lomvia) shows marine-specific and regional patterns of relationships to other viruses.

    abstract::Influenza A viruses infect a range of host species, including various mammals and more than 100 species of birds. For avian influenza viruses (AIV), prevalence varies between different groups of birds, with waterfowl showing the highest prevalence. We have sequenced the complete genome of A/Thick-billed Murre/Newfound...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-010-0504-5

    authors: Granter A,Wille M,Whitney H,Robertson GJ,Ojkic D,Lang AS

    更新日期:2010-10-01 00:00:00

  • Characterization of H5N1 highly pathogenic avian influenza viruses isolated from poultry in Pakistan 2006-2008.

    abstract::Nine avian influenza viruses (AIV), H5N1 subtype, were isolated from dead poultry in the Karachi region of Pakistan from 2006 to 2008. The intravenous pathogenicity indices and HA protein cleavage sites of all nine viruses were consistent with highly pathogenic AIV. Based on phylogenetic analysis of the HA genes, thes...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-011-0689-2

    authors: Wasilenko JL,Pantin-Jackwood M,Khan TA,Ahmed A,Rehmani SF,Lone NA,Swayne DE,Spackman E

    更新日期:2012-04-01 00:00:00

  • Parrot bornavirus-2 and -4 RNA detected in wild bird samples in Japan are phylogenetically adjacent to those found in pet birds in Japan.

    abstract::Bornaviruses (family Bornaviridae) are non-segmented negative-strand RNA viruses. Avian bornaviruses (ABVs), which are causative agents of proventricular dilatation disease, are a genetically diverse group with at least 15 genotypes, including parrot bornaviruses (PaBVs) and aquatic bird bornavirus 1(ABBV-1). Borna di...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-015-1240-7

    authors: Sassa Y,Bui VN,Saitoh K,Watanabe Y,Koyama S,Endoh D,Horie M,Tomonaga K,Furuya T,Nagai M,Omatsu T,Imai K,Ogawa H,Mizutani T

    更新日期:2015-10-01 00:00:00

  • Functional organization of variola major and vaccinia virus genomes.

    abstract::Comparison of the genomic organization of variola and vaccinia viruses has been carried out. Molecular factors of virulence of these viruses is the focus of this review. Possible roles of the genes of soluble cytokine receptors, complement control proteins, factors of virus replication, and dissemination in vivo for v...

    journal_title:Virus genes

    pub_type: 杂志文章,评审

    doi:10.1007/BF01724297

    authors: Shchelkunov SN

    更新日期:1995-01-01 00:00:00

  • Trends of subtype variation of human immunodeficiency virus type 1 in Zhejiang Province, China.

    abstract::The epidemic characteristics of human immunodeficiency virus type 1 (HIV-1) in Zhejiang Province have not been systematically identified. This study presented a dynamic analysis of HIV-1 subtype variation in Zhejiang from 2004 to 2008, based on the surveillance of molecular epidemiology or drug resistance. CRF01_AE wa...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-014-1136-y

    authors: Yao Y,Xin R,Yang J,Xu Y,Zhang J,Xia Y,Pan X,Guo Z,Song Y

    更新日期:2015-02-01 00:00:00

  • The use of bovine MHC class I allele-specific peptide motifs and proteolytic cleavage specificities for the prediction of potential cytotoxic T lymphocyte epitopes of bovine viral diarrhea virus.

    abstract::Cell mediated immunity (CMI) is crucial for the defense against viruses. Cytotoxic T lymphocytes (CTLs) play a major role in CMI. They recognize endogenous antigenic peptides presented by antigen presenting cells in association with the major histocompatibility complex (MHC) class I molecules. The elucidation of the s...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1007913216861

    authors: Hegde NR,Srikumaran S

    更新日期:1997-01-01 00:00:00

  • Small RNA expression from the oncogenic region of a highly oncogenic strain of herpesvirus saimiri.

    abstract::Herpesvirus saimiri induces acute lymphomas and leukemias in primates and rabbits. Sequence divergence of the right end unique region of the genome classifies virus strains into three groups (A, B, and C), and previous studies have demonstrated correlation between DNA grouping and oncogenicity. In order to relate diff...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF01703599

    authors: Geck P,Whitaker SA,Medveczky MM,Last TJ,Medveczky PG

    更新日期:1994-01-01 00:00:00

  • Genetic relationship of Borna disease virus isolates.

    abstract::The infection of humans with Boma disease virus (BDV) is still a matter of debate. In a recent publication, we described a BDV (RW98) isolated from the blood of a psychiatric patient. The RNA of this virus differed more than 5% from that of the widely used strain He/80, which was supposed to represent our laboratory v...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1023/a:1022321920287

    authors: Planz O,Rziha HJ,Stitz L

    更新日期:2003-01-01 00:00:00

  • Sequence of Echinochloa hoja blanca tenuivirus RNA-4.

    abstract::The sequence is presented of RNA-4 of Echinochloa hoja blanca tenuivirus (EHBV), one of two tenuiviruses associated with rice cultivation in Latin America (together with rice hoja blanca virus; RHBV). Analysis of the sequence shows that the coding regions of EHBV RNA-4 are closely related to those of RHBV RNA-4. Howev...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF00576979

    authors: de Miranda JR,Muñoz M,Wu R,Espinoza AM

    更新日期:1996-01-01 00:00:00

  • Cervical cancer-causing human papillomaviruses have an alternative initiation site for the L1 protein.

    abstract::All known sequences of the DNA encoding the major cervical cancer-causing human papillomavirus type 16 (HPV16) L1 capsid protein contain initiation codons which would allow translation to begin at either nucleotide 5559 or 5637. However the formation of virus-like particles (VLPs) only occurs efficiently when the init...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-004-4579-8

    authors: Webb E,Cox J,Edwards S

    更新日期:2005-01-01 00:00:00

  • The evolution of small DNA viruses of eukaryotes: past and present considerations.

    abstract::Historically, viral evolution has often been considered from the perspective of the ability of the virus to maintain viral pathogenic fitness by causing disease. A predator-prey model has been successfully applied to explain genetically variable quasi-species of viruses, such as influenza virus and human immunodeficie...

    journal_title:Virus genes

    pub_type: 杂志文章,评审

    doi:10.1007/BF01728663

    authors: Shadan FF,Villarreal LP

    更新日期:1995-01-01 00:00:00

  • Characterisation of a satellite RNA of Cucumber mosaic virus that induces chlorosis in Capsicum annuum.

    abstract::The presence of Cucumber mosaic virus (CMV) satellite RNA dramatically changes symptoms on some hosts. A satellite RNA present in a strain of CMV (PepY-CMV) that induced chlorosis in pepper (Capsicum annuum) was shown to induce chlorosis in pepper in combination with another strain (Fny-CMV) that by itself induced a g...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-011-0608-6

    authors: Choi SK,Jeon YW,Yoon JY,Choi JK

    更新日期:2011-08-01 00:00:00

  • A novel fusarivirus isolated from the phytopathogenic fungus Nigrospora oryzae.

    abstract::In this study, we report the discovery and molecular characterization of a novel mycovirus, Nigrospora oryzae fusarivirus 1 (NoFV1) isolated from the rice-infecting fungus Nigrospora oryzae. Excluding a poly (A) tail, the genome of the virus is 7004 nucleotide (nt) long containing three putative nonoverlapping open re...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-016-1371-5

    authors: Zhong J,Zhao SQ,Li GF,Pang XD,Deng XJ,Zhu HJ,Da Gao B,Zhou Q

    更新日期:2016-12-01 00:00:00

  • Genomic characterization of two Orf virus isolates from Jilin province in China.

    abstract::Orf virus (ORFV), a typical member of the Parapoxvirus genus within the family Poxviridae, which is the causative agent of Orf, a common epitheliotropic viral disease of sheep, goats, wild ruminants, and humans. In the present study, we sequenced the complete genomic sequences of two ORFV strains (ORFV-SY17, isolated ...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-019-01666-y

    authors: Zhong J,Guan J,Zhou Y,Cui S,Wang Z,Zhou S,Xu M,Wei X,Gao Y,Zhai S,Song D,He W,Gao F,Zhao K

    更新日期:2019-08-01 00:00:00

  • Expression of biologically active HIV glycoproteins using a T7 RNA polymerase-based eucaryotic vector system.

    abstract::Bacteriophage T7 RNA polymerase and a derivative containing a nuclear localization signal were transiently expressed in CV-1 cells and were shown to localize to the cytoplasm and nucleus, respectively. A vector was constructed containing T7 promoter and transcription terminator sequences flanking a picornaviral 5' unt...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/BF01702562

    authors: Wilk T,Mierswa H,Kräusslich HG,Dunn JJ,Bosch V

    更新日期:1992-08-01 00:00:00

  • Merkel cell polyomavirus in Merkel cell carcinogenesis: small T antigen-mediates c-Jun phosphorylation.

    abstract::Merkel cell carcinoma (MCC) is a highly aggressive neuroendocrine skin cancer associated with the Merkel cell polyomavirus (MCPyV). The MCPyV genome, which is clonally integrated in the majority of MCCs, encodes the regulatory small T (sT) antigen. Previously, reports have established MCPyV sT antigen as a potent onco...

    journal_title:Virus genes

    pub_type: 杂志文章

    doi:10.1007/s11262-016-1304-3

    authors: Wu JH,Simonette RA,Nguyen HP,Rady PL,Tyring SK

    更新日期:2016-06-01 00:00:00