Abstract：
:The need for plant image analysis tools is established and has led to a steadily expanding literature and set of software tools. This is encouraging, but raises a question: how does a plant scientist with no detailed knowledge or experience of image analysis methods choose the right tool(s) for the task at hand, or satisfy themselves that a suggested approach is appropriate? We believe that too great an emphasis is currently being placed on low-level mechanisms and software environments. In this opinion article we propose that a renewed focus on the core theories and algorithms used, and in particular the assumptions upon which they rely, will better equip plant scientists to evaluate the available resources.
journal_name
Trends Plant Scijournal_title
Trends in plant scienceauthors
Pridmore TP,French AP,Pound MPdoi
10.1016/j.tplants.2012.07.003subject
Has Abstractpub_date
2012-12-01 00:00:00pages
688-92issue
12eissn
1360-1385issn
1878-4372pii
S1360-1385(12)00168-9journal_volume
17pub_type
杂志文章,评审abstract：:Any given pathogenic microbial species typically colonizes a limited number of plant species. Plant species outside of this host range mount nonhost disease resistance to attempted colonization by the, in this case, non-adapted pathogen. The underlying mechanism of nonhost immunity and host immunity involves the same ...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2011.01.001
更新日期：2011-03-01 00:00:00
abstract：:Being continuously exposed to variable environmental conditions, plants produce phytohormones to react quickly and specifically to these changes. The phytohormone ethylene is produced in response to multiple stresses. While the role of ethylene in defense responses to pathogens is widely recognized, recent studies in ...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2018.01.003
更新日期：2018-04-01 00:00:00
abstract：:Plants have mechanisms to promote outbreeding and thereby to increase their genetic diversity. In species that are self-incompatible, self-pollen is rejected by the stigma. This mechanism has been the subject of intense study for many years and, in the past two years, significant progress has been made in identifying ...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/s1360-1385(00)01759-3
更新日期：2000-10-01 00:00:00
abstract：:Natural genetic variation within plant species is at the core of plant science ranging from agriculture to evolution. Whereas much progress has been made in mapping quantitative trait loci (QTLs) controlling this natural variation, the elucidation of the underlying molecular mechanisms has remained a bottleneck. Recen...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2007.11.008
更新日期：2008-02-01 00:00:00
abstract：:The Arabidopsis thaliana accession Landsberg erecta contains an induced mutation in the leucine-rich repeat receptor-like Ser/Thr kinase gene ERECTA. Landsberg erecta is commonly used as a genetic background in mutant screens and in natural variation studies. Therefore, the erecta mutation is present in many loss-of-f...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2009.01.010
更新日期：2009-04-01 00:00:00
abstract：:PHYTOCHROME-INTERACTING FACTOR 3 (PIF3) is a basic helix-loop-helix transcription factor with critical roles in light signaling. Recent work identified PIF3 as a negative regulator of arabidopsis (Arabidopsis thaliana) freezing tolerance. ...
journal_title：Trends in plant science
pub_type： 评论,杂志文章
doi：10.1016/j.tplants.2017.12.003
更新日期：2018-02-01 00:00:00
abstract：:We propose that symbiotically modified organisms (SMOs) should be taken into account in sustainable agriculture. In this opinion article, we present the results of a meta-analysis of the literature, with a particular focus on the potential of SMOs in forage and turf grass production, to determine the impact of endophy...
journal_title：Trends in plant science
pub_type： 杂志文章,meta分析
doi：10.1016/j.tplants.2013.03.003
更新日期：2013-08-01 00:00:00
abstract：:Intelligent behaviour, even in humans, is an aspect of complex adaptive behaviour that provides a capacity for problem solving. This article assesses whether plants have a capacity to solve problems and, therefore, could be classified as intelligent organisms. The complex molecular network that is found in every plant...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2005.07.005
更新日期：2005-09-01 00:00:00
abstract：:The INDETERMINATE DOMAIN (IDD) family of transcriptional regulators controls a diversity of processes in a variety of plant tissues and organs and at different stages of plant development. Several recent reports describe the genetic characterization of IDD family members, including those that are likely to regulate C4...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2017.09.008
更新日期：2018-01-01 00:00:00
abstract：:Several soil-borne microbes such as mycorrhizal fungi and plant growth-promoting rhizobacteria can help plants to deal with biotic and abiotic stresses via plant growth promotion and induced resistance. Such beneficial belowground microbes interact in a bidirectional way via the plant with aboveground insects such as ...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2010.05.007
更新日期：2010-09-01 00:00:00
abstract：:Ultraviolet-B (UV-B) light suppresses hypocotyl elongation. Although UV-B photo-perception mechanisms have been well investigated, the signaling events from UV-B photoreceptor to downstream transcription are largely unknown. Two recent papers illustrate that the UV-B photoreceptor directly inhibits its interacting tra...
journal_title：Trends in plant science
pub_type： 评论,杂志文章
doi：10.1016/j.tplants.2018.03.002
更新日期：2018-04-01 00:00:00
abstract：:Climatic extremes threaten agricultural sustainability worldwide. One approach to increase plant water-use efficiency (WUE) is to introduce crassulacean acid metabolism (CAM) into C3 crops. Such a task requires comprehensive systems-level understanding of the enzymatic and regulatory pathways underpinning this tempora...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2014.01.006
更新日期：2014-05-01 00:00:00
abstract：:Over the past decade, the ABC model of flower development has been widely promulgated. However, correct flower-organ development requires not only the ABC genes but also the SEPALLATA genes. When the SEPALLATA genes are expressed together with the ABC genes, both vegetative and cauline leaves are converted to floral o...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/s1360-1385(01)01987-2
更新日期：2001-07-01 00:00:00
abstract：:Resistance genes allow plants to recognize specific pathogens. Recognition results in the activation of a variety of defence responses, including localized programmed cell death (the hypersensitive response), synthesis of pathogenesis-related proteins and induction of systemic acquired resistance. These responses are ...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/s1360-1385(99)01390-4
更新日期：1999-04-01 00:00:00
abstract：:ATP and other nucleoside triphosphates not only drive energy-dependent reactions inside cells, but can also function outside the plasma membrane in the extracellular matrix, where they function as agonists that can induce diverse physiological responses without being hydrolyzed. This external role of ATP is well estab...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2007.09.003
更新日期：2007-11-01 00:00:00
abstract：:Algae are (mostly) photosynthetic eukaryotes that occupy multiple branches of the tree of life, and are vital for planet function and health. In this review, we highlight a transformative period in studies of the evolution and functioning of this extraordinary group of organisms and their potential for novel applicati...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2017.05.005
更新日期：2017-08-01 00:00:00
abstract：:It is challenging to understand how plants adapt flowering time to novel environmental conditions, such as global warming, while maintaining plasticity in response to daily fluctuating temperatures. A recent study shows a role for transposons and highlights the need to investigate how these different responses evolved...
journal_title：Trends in plant science
pub_type： 评论,杂志文章
doi：10.1016/j.tplants.2015.11.015
更新日期：2016-01-01 00:00:00
abstract：:Serine/threonine-specific phosphoprotein phosphatases (PPPs) are ubiquitous enzymes in all eukaryotes, but their regulatory functions are largely unknown in higher plants. The Arabidopsis genome encodes 26 PPP catalytic subunits related to type 1, type 2A and so-called novel phosphatases, including four plant-specific...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2007.03.003
更新日期：2007-04-01 00:00:00
abstract：:Ecological, signaling, metabolic, and chemical processes in plant-microorganism systems and in plant-derived material may link the use of chlorinated pesticides in the environment with plant chloromethane emission. This neglected factor should be taken into account to assess global planetary budgets of chloromethane a...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2017.12.001
更新日期：2018-02-01 00:00:00
abstract：:The identification of several lesion mimic mutants (LMM) that misregulate cell death constitutes a powerful tool to unravel programmed cell death (PCD) pathways in plants, particularly the hypersensitive response (HR), a form of PCD associated with resistance to pathogens. Recently, the characterization of novel LMM h...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/S1360-1385(03)00108-0
更新日期：2003-06-01 00:00:00
abstract：:Chloroplasts have a dynamic protein environment and, although proteases are presumably major contributors, the identities of these crucial regulatory proteins have only recently been revealed. There are defined proteases within each of the major chloroplast compartments: the ATP-dependent Clp and FtsH proteases in the...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/s1360-1385(02)02326-9
更新日期：2002-10-01 00:00:00
abstract：:Until recently, few data were available on photosynthesis and its underlying mechanistically limiting factors in plants, other than crops and model species. Currently, a new large pool of data from extant representatives of basal terrestrial plant groups is emerging, allowing exploration of how photosynthetic capacity...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2019.07.002
更新日期：2019-10-01 00:00:00
abstract：:CURT1 proteins induce membrane curvature to grana margins in Arabidopsis (Arabidopsis thaliana) thylakoids. A domain sharing sequence and structural features with CURT1 is found in some cyanobacterial aminoacyl-tRNA synthetases (aaRSs) that show an unusual localization to the thylakoid membranes. Evolutionary scenario...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2013.12.004
更新日期：2014-02-01 00:00:00
abstract：:Laser-assisted microdissection (LAM) is a powerful tool for isolating specific tissues, cell types and even organelles from sectioned biological specimen in a manner conducive to the extraction of RNA, DNA or protein. LAM, which is an established technique in many areas of biology, has now been successfully adapted fo...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2005.06.006
更新日期：2005-08-01 00:00:00
abstract：:Plants downregulate their defences against insect herbivores upon impending competition for light. This has long been considered a resource trade-off, but recent advances in plant physiology and ecology suggest this mechanism is more complex. Here we propose that to understand why plants regulate and balance growth an...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2016.12.006
更新日期：2017-04-01 00:00:00
abstract：:The intricate, heavily folded inner membrane of mitochondria houses the respiratory chain complexes. These complexes, together with the ATP synthase complex, are responsible for energy production, which is stored as ATP. The structure of the individual membrane-bound protein components has been well characterized. In ...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2006.03.007
更新日期：2006-05-01 00:00:00
abstract：:Plants have evolved a large number of cell surface-resident receptor-like kinases (RLKs) and receptor-like proteins (RLPs), many of which are implicated in sensing extrinsic and intrinsic signals, and govern diverse cellular responses. The signaling pathways mediated by RLKs and RLPs converge at a small group of RLKs,...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2016.08.014
更新日期：2016-12-01 00:00:00
abstract：:As a son of an engineer who traveled widely during his career, Heribert Hirt began his life in the exotic country of Iran, before receiving his high-school education in Germany and then studying biochemistry at the University of Cape Town and then later at the University of Vienna, from where he received his PhD in 19...
journal_title：Trends in plant science
pub_type： 传,历史文章,面试
doi：10.1016/j.tplants.2015.11.007
更新日期：2016-01-01 00:00:00
abstract：:Through multifaceted genome-scale research involving phylogenomics, targeted gene surveys, and gene expression analyses in diverse basal lineages of angiosperms, our studies provide insights into the most recent common ancestor of all extant flowering plants. MADS-box gene duplications have played an important role in...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2007.06.012
更新日期：2007-08-01 00:00:00
abstract：:Our knowledge of soil biodiversity in agriculture in general is currently increasing rapidly. However, almost all studies have stopped with the quantification of soil biodiversity effects on crops at harvest time, ignoring subsequent processes along the agrifood chain until food arrives on our plates. Here we develop ...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2017.10.003
更新日期：2018-01-01 00:00:00
