Making Roots, Shoots, and Seeds: IDD Gene Family Diversification in Plants.

Abstract:

:The INDETERMINATE DOMAIN (IDD) family of transcriptional regulators controls a diversity of processes in a variety of plant tissues and organs and at different stages of plant development. Several recent reports describe the genetic characterization of IDD family members, including those that are likely to regulate C4 kranz anatomy, with implications for the engineering of C4 traits into C3 crops. In this review we summarize the reported functions of IDD members in the regulation of metabolic sensing and leaf, root, seed, and inflorescence development. We also provide an IDD phylogeny for the grasses and suggest future directions and strategies to define the function of IDDs in C4 photosynthesis and other developmental processes.

journal_name

Trends Plant Sci

journal_title

Trends in plant science

authors

Coelho CP,Huang P,Lee DY,Brutnell TP

doi

10.1016/j.tplants.2017.09.008

subject

Has Abstract

pub_date

2018-01-01 00:00:00

pages

66-78

issue

1

eissn

1360-1385

issn

1878-4372

pii

S1360-1385(17)30204-2

journal_volume

23

pub_type

杂志文章,评审
  • Functions of microRNAs in plant stress responses.

    abstract::The discovery of microRNAs (miRNAs) as gene regulators has led to a paradigm shift in the understanding of post-transcriptional gene regulation in plants and animals. miRNAs have emerged as master regulators of plant growth and development. Evidence suggesting that miRNAs play a role in plant stress responses arises f...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2012.01.010

    authors: Sunkar R,Li YF,Jagadeeswaran G

    更新日期:2012-04-01 00:00:00

  • Targeting detoxification pathways: an efficient approach to obtain plants with multiple stress tolerance?

    abstract::A serious factor limiting the engineering of stress tolerance has been our ignorance about the function of stress-induced genes. A stress-activated novel aldose-aldehyde reductase was cloned from alfalfa. The ectopic expression of this gene in tobacco resulted in tolerance to oxidative stress and dehydration. Physiolo...

    journal_title:Trends in plant science

    pub_type: 新闻

    doi:10.1016/s1360-1385(01)01983-5

    authors: Bartels D

    更新日期:2001-07-01 00:00:00

  • RNA silencing bridging the gaps in wheat extracts.

    abstract::In plants, RNA silencing plays important roles in antiviral defence, genome integrity and development. This process involves nucleotide sequence-specific interactions that are mediated by small RNA molecules of 21-25 nucleotides. Although the core biochemical reactions of RNA silencing have been well characterized in ...

    journal_title:Trends in plant science

    pub_type: 评论,杂志文章

    doi:10.1016/S1360-1385(03)00129-8

    authors: Voinnet O

    更新日期:2003-07-01 00:00:00

  • Diversity in Plant Breeding: A New Conceptual Framework.

    abstract::Faced with an accelerating rate of environmental change and the associated need for a more sustainable, low-input agriculture, the urgent new challenge for crop science is to find ways to introduce greater diversity to cropping systems. However, there is a dearth of generic formalism in programs seeking to diversify c...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2015.07.007

    authors: Litrico I,Violle C

    更新日期:2015-10-01 00:00:00

  • Leveraging metabolomics for functional investigations in sequenced marine diatoms.

    abstract::Recent years have witnessed the genomic decoding of a wide range of photosynthetic organisms from the model plant Arabidopsis thaliana and the complex genomes of important crop species to single-celled marine phytoplankton. The comparative sequencing of green, red and brown algae has provided considerable insight into...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2012.02.005

    authors: Fernie AR,Obata T,Allen AE,Araújo WL,Bowler C

    更新日期:2012-07-01 00:00:00

  • Plant meiosis: the means to 1N.

    abstract::Meiosis is pivotal in the life history of plants. In addition to providing an opportunity for genetic reassortment, it marks the transition from diploid sporophyte to haploid gametophyte. Recent molecular data suggest that, like animals, plants possess a common set of genes (also conserved in eukaryotic microorganisms...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/s1360-1385(00)01861-6

    authors: Bhatt AM,Canales C,Dickinson HG

    更新日期:2001-03-01 00:00:00

  • Engineering NLR immune receptors for broad-spectrum disease resistance.

    abstract::Two recent reports by Maekawa et al. and Narusaka et al. demonstrated the transfer of a nucleotide-binding domain and leucine-rich repeat (NLR) family of immune receptors into evolutionarily diverged plants without causing adverse fitness consequences. The applications of NLRs in engineering durable and broad-spectrum...

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/j.tplants.2013.08.005

    authors: Mukhtar MS

    更新日期:2013-09-01 00:00:00

  • How the deposition of cellulose microfibrils builds cell wall architecture.

    abstract::Cell walls, the extracytoplasmic matrices of plant cells, consist of an ordered array of cellulose microfibrils embedded in a matrix of polysaccharides and glycoproteins. This construction is reminiscent of steel rods in reinforced concrete. How a cell organizes these ordered textures around itself, creating its own d...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/s1360-1385(99)01507-1

    authors: Emons AM,Mulder BM

    更新日期:2000-01-01 00:00:00

  • Modification of DNA Checkpoints to Confer Aluminum Tolerance.

    abstract::Although aluminum (Al) toxicity represents a global agricultural problem, the biochemical targets for Al remain elusive. Recently identified Arabidopsis mutants with increased Al tolerance provide evidence of DNA as one of the main targets of Al. This insight could lead the way for novel strategies to generate Al-tole...

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/j.tplants.2016.12.003

    authors: Eekhout T,Larsen P,De Veylder L

    更新日期:2017-02-01 00:00:00

  • Molecular mechanisms of self-recognition in Brassica self-incompatibility.

    abstract::Plants have mechanisms to promote outbreeding and thereby to increase their genetic diversity. In species that are self-incompatible, self-pollen is rejected by the stigma. This mechanism has been the subject of intense study for many years and, in the past two years, significant progress has been made in identifying ...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/s1360-1385(00)01759-3

    authors: Brugière N,Rothstein SJ,Cui Y

    更新日期:2000-10-01 00:00:00

  • The Arabidopsis RRS1-R disease resistance gene--uncovering the plant's nucleus as the new battlefield of plant defense?

    abstract::The isolation of over 30 plant disease-resistance genes revealed that most genes encode putatively cytoplasmic proteins with a nucleotide-binding site (NBS) and a leucine-rich repeat (LRR). However, the recent isolation of the Arabidopsis RRS1-R gene has uncovered a novel NBS-LRR subtype that harbors a C-terminal exte...

    journal_title:Trends in plant science

    pub_type: 新闻

    doi:10.1016/s1360-1385(02)02334-8

    authors: Lahaye T

    更新日期:2002-10-01 00:00:00

  • Milestones in chloroplast genetic engineering: an environmentally friendly era in biotechnology.

    abstract::Chloroplast genomes defied the laws of Mendelian inheritance at the dawn of plant genetics, and continue to defy the mainstream approach to biotechnology, leading the field in an environmentally friendly direction. Recent success in engineering the chloroplast genome for resistance to herbicides, insects, disease and ...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/s1360-1385(01)02193-8

    authors: Daniell H,Khan MS,Allison L

    更新日期:2002-02-01 00:00:00

  • Cutting edge of chloroplast proteolysis.

    abstract::Chloroplasts have a dynamic protein environment and, although proteases are presumably major contributors, the identities of these crucial regulatory proteins have only recently been revealed. There are defined proteases within each of the major chloroplast compartments: the ATP-dependent Clp and FtsH proteases in the...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/s1360-1385(02)02326-9

    authors: Adam Z,Clarke AK

    更新日期:2002-10-01 00:00:00

  • MYBs Drive Novel Consumer Traits in Fruits and Vegetables.

    abstract::Eating plant-derived compounds can lead to a longer and healthier life and also benefits the environment. Innovation in the fresh food sector, as well as new cultivars, can improve consumption of fruit and vegetables, with MYB transcription factors being a target to drive this novelty. Plant MYB transcription factors ...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2018.06.001

    authors: Allan AC,Espley RV

    更新日期:2018-08-01 00:00:00

  • Carotenoid sequestration in plants: the role of carotenoid-associated proteins.

    abstract::In plants, carotenoid accumulation and sequestration take place within chloroplasts and chromoplasts. In the chloroplast, practically all carotenoids are associated with chlorophyll-binding proteins, whereas chromoplasts have developed a unique mechanism to sequester carotenoids within specific lipoprotein structures....

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/s1360-1385(99)01414-4

    authors: Vishnevetsky M,Ovadis M,Vainstein A

    更新日期:1999-06-01 00:00:00

  • Sugar transporters in higher plants--a diversity of roles and complex regulation.

    abstract::Sugar-transport proteins play a crucial role in the cell-to-cell and long-distance distribution of sugars throughout the plant. In the past decade, genes encoding sugar transporters (or carriers) have been identified, functionally expressed in heterologous systems, and studied with respect to their spatial and tempora...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/s1360-1385(00)01681-2

    authors: Williams LE,Lemoine R,Sauer N

    更新日期:2000-07-01 00:00:00

  • Functional genomics of plant photosynthesis in the fast lane using Chlamydomonas reinhardtii.

    abstract::Oxygenic photosynthesis by algae and plants supports much of life on Earth. Several model organisms are used to study this vital process, but the unicellular green alga Chlamydomonas reinhardtii offers significant advantages for the genetic dissection of photosynthesis. Recent experiments with Chlamydomonas have subst...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/s1360-1385(01)02018-0

    authors: Dent RM,Han M,Niyogi KK

    更新日期:2001-08-01 00:00:00

  • Local Auxin Biosynthesis Mediates Plant Growth and Development.

    abstract::Auxin is one of the most important plant hormones controlling various aspects of plant growth and development. Here, we highlight three recent papers that shed light on how local auxin biosynthesis contributes to plant growth and development in response to endogenous developmental signals and exogenous environmental c...

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/j.tplants.2018.10.014

    authors: Lv B,Yan Z,Tian H,Zhang X,Ding Z

    更新日期:2019-01-01 00:00:00

  • Cystathionine gamma-synthase and threonine synthase operate in concert to regulate carbon flow towards methionine in plants.

    abstract::The sulfur-containing amino acid methionine is a nutritionally important essential amino acid and is the precursor of several metabolites that regulate plant growth and responses to the environment. Methionine production is largely regulated by cystathionine gamma-synthase, the first specific enzyme for its synthesis....

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/s1360-1385(02)02227-6

    authors: Amir R,Hacham Y,Galili G

    更新日期:2002-04-01 00:00:00

  • Aluminium tolerance in plants and the complexing role of organic acids.

    abstract::The aluminium cation Al(3+) is toxic to many plants at micromolar concentrations. A range of plant species has evolved mechanisms that enable them to grow on acid soils where toxic concentrations of Al(3+) can limit plant growth. Organic acids play a central role in these aluminium tolerance mechanisms. Some plants de...

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/s1360-1385(01)01961-6

    authors: Ma JF,Ryan PR,Delhaize E

    更新日期:2001-06-01 00:00:00

  • Manipulators live better, but are they always parasites?

    abstract::A recent study reports partner manipulation for an interaction that was considered a reward-for-defence mutualism. Secretions of lycaenid caterpillars altered ant locomotion and aggressiveness, likely by manipulating dopaminergic signalling. This study opens the question whether such manipulation is common and whether...

    journal_title:Trends in plant science

    pub_type: 评论,杂志文章

    doi:10.1016/j.tplants.2015.08.001

    authors: Heil M

    更新日期:2015-09-01 00:00:00

  • Small Millets for Enduring Food Security Amidst Pandemics.

    abstract::Food security is an ongoing problem, and current staple foods are not sufficient to overcome challenges such as the present COVID-19 pandemic. We propose here that small millets have the potential to become new staple crops, especially in hunger hotspots. Currently, the absence of intensification of millet farming, la...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2020.08.008

    authors: Muthamilarasan M,Prasad M

    更新日期:2021-01-01 00:00:00

  • Challenges towards Revitalizing Hemp: A Multifaceted Crop.

    abstract::Hemp has been an important crop throughout human history for food, fiber, and medicine. Despite significant progress made by the international research community, the basic biology of hemp plants remains insufficiently understood. Clear objectives are needed to guide future research. As a semi-domesticated plant, hemp...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2017.08.004

    authors: Schluttenhofer C,Yuan L

    更新日期:2017-11-01 00:00:00

  • Phytomelatonin: An Emerging Regulator of Plant Biotic Stress Resistance.

    abstract::Melatonin has diverse functions in plant development and stress tolerance, with recent evidence showing a beneficial role in plant biotic stress tolerance. It has been hypothesized that pathogenic invasion causes the immediate generation of melatonin, reactive oxygen species (ROS), and reactive nitrogen species (RNS),...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2020.08.009

    authors: Zhao D,Wang H,Chen S,Yu D,Reiter RJ

    更新日期:2021-01-01 00:00:00

  • Towards the molecular basis of heterosis.

    abstract::Heterosis describes the superior performance of heterozygous hybrid plants over their homozygous parental inbred lines. Despite the rediscovery of this phenomenon a century ago and its paramount agronomic importance, the genetic and molecular basis of heterosis remains enigmatic. Recently, various pioneer studies desc...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2007.08.005

    authors: Hochholdinger F,Hoecker N

    更新日期:2007-09-01 00:00:00

  • How is FLC repression initiated by cold?

    abstract::Vernalization is the promotion of flowering in response to prolonged exposure to low temperatures. In Arabidopsis, FLOWERING LOCUS C (FLC), a suppressor of flowering, is repressed by low temperatures but the mechanism leading to the initial decrease in FLC transcription remains a mystery. No mutants that block the rep...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2014.12.004

    authors: Helliwell CA,Anderssen RS,Robertson M,Finnegan EJ

    更新日期:2015-02-01 00:00:00

  • Symbiotically modified organisms: nontoxic fungal endophytes in grasses.

    abstract::We propose that symbiotically modified organisms (SMOs) should be taken into account in sustainable agriculture. In this opinion article, we present the results of a meta-analysis of the literature, with a particular focus on the potential of SMOs in forage and turf grass production, to determine the impact of endophy...

    journal_title:Trends in plant science

    pub_type: 杂志文章,meta分析

    doi:10.1016/j.tplants.2013.03.003

    authors: Gundel PE,Pérez LI,Helander M,Saikkonen K

    更新日期:2013-08-01 00:00:00

  • Tools and Strategies for Long-Read Sequencing and De Novo Assembly of Plant Genomes.

    abstract::The commercial release of third-generation sequencing technologies (TGSTs), giving long and ultra-long sequencing reads, has stimulated the development of new tools for assembling highly contiguous genome sequences with unprecedented accuracy across complex repeat regions. We survey here a wide range of emerging seque...

    journal_title:Trends in plant science

    pub_type: 杂志文章,评审

    doi:10.1016/j.tplants.2019.05.003

    authors: Jung H,Winefield C,Bombarely A,Prentis P,Waterhouse P

    更新日期:2019-08-01 00:00:00

  • Vacuolar proton pumping: more than the sum of its parts?

    abstract::Petunia flower colour is dependent on vacuolar pH and is therefore used to study acidification mechanisms. Recently, it was shown that the concerted action of two tonoplast-localised P3-ATPases is required to hyperacidify vacuoles of petunia petal epidermis cells. Here we discuss how steep cross-tonoplast pH gradients...

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/j.tplants.2014.03.008

    authors: Eisenach C,Baetz U,Martinoia E

    更新日期:2014-06-01 00:00:00

  • Revealing micro-RNAs in plants.

    abstract::Recent work has resulted in the identification of >100 endogenous non-coding small RNA molecules in plants. These micro-RNAs (miRNAs) have the capacity to regulate a range of predicted target mRNAs, many of which are transcription factors involved in the control of meristem identity. Mutants defective in either CARPEL...

    journal_title:Trends in plant science

    pub_type: 杂志文章

    doi:10.1016/s1360-1385(02)02361-0

    authors: Jones L

    更新日期:2002-11-01 00:00:00