Widely targeted metabolomics and coexpression analysis as tools to identify genes involved in the side-chain elongation steps of aliphatic glucosinolate biosynthesis.

Abstract:

:Amino acid and glucosinolate biosynthesis are two interdependent pathways; amino acid synthesis as a part of primary metabolism provides the precursors for glucosinolate biosynthesis in secondary metabolism. In our previous studies, the combination of coexpression analysis and metabolite profiling led to the identification of genes and key regulators involved in glucosinolate biosynthesis. Moreover, the integration of transcriptome and metabolome data of sulphur-deprived Arabidopsis plants revealed coordinate changes in the expression profiles of genes involved in glucosinolate and amino acid metabolism.This review provides an overview of our recent studies involving Arabidopsis mutant plants that exhibit impairment in the side-chain elongation process occurring during aliphatic glucosinolate biosynthesis by means of coexpression analysis and a novel metabolite profiling approach based on ultra-performance liquid chromatography coupled with tandem quadrupole mass spectrometry (UPLC-TQMS) (Sawada et al. 2009a). Thus, this review highlights the advantages of the omics-based approach in identifying genes involved in glucosinolate biosynthesis.

journal_name

Amino Acids

journal_title

Amino acids

authors

Albinsky D,Sawada Y,Kuwahara A,Nagano M,Hirai A,Saito K,Hirai MY

doi

10.1007/s00726-010-0681-5

subject

Has Abstract

pub_date

2010-10-01 00:00:00

pages

1067-75

issue

4

eissn

0939-4451

issn

1438-2199

journal_volume

39

pub_type

杂志文章
  • Microglial self-defence mediated through GLT-1 and glutathione.

    abstract::Glutamate is stored in synaptic vesicles in presynaptic neurons. It is released into the synaptic cleft to provide signalling to postsynaptic neurons. Normally, the astroglial glutamate transporters GLT-1 and GLAST take up glutamate to mediate a high signal-to-noise ratio in the synaptic signalling, and also to preven...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-011-0865-7

    authors: Persson M,Rönnbäck L

    更新日期:2012-01-01 00:00:00

  • Optimal and effective oral dose of taurine to prolong exercise performance in rat.

    abstract::The aim of this study was to determine the effective and optimum dose of taurine for exercise performance and to maintain tissue taurine concentration. Rats received a respective daily dose of 0, 20, 100, and 500 mg/kg body weight of taurine (EC and ET-1, -2, -3 groups, respectively) for two weeks, and then, were subj...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-004-0133-1

    authors: Miyazaki T,Matsuzaki Y,Ikegami T,Miyakawa S,Doy M,Tanaka N,Bouscarel B

    更新日期:2004-12-01 00:00:00

  • Asymmetric synthesis of α-amino acids via homologation of Ni(II) complexes of glycine Schiff bases. Part 3: Michael addition reactions and miscellaneous transformations.

    abstract::The major goal of this review is a critical discussion of the literature data on asymmetric synthesis of α-amino acids via Michael addition reactions involving Ni(II)-complexes of amino acids. The material covered is divided into two conceptually different groups dealing with applications of: (a) Ni(II)-complexes of g...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-014-1764-5

    authors: Aceña JL,Sorochinsky AE,Soloshonok V

    更新日期:2014-09-01 00:00:00

  • Effects of glycosylated (2S,4R)-hydroxyproline on the stability and assembly of collagen triple helices.

    abstract::Functionalized collagen-mimetic peptides (CMPs) have been widely used in the preparation of collagen-related biomaterials. Among the reported results, the induced noncovalent interactions between the implanted functional groups or moieties were frequently the key elements to promote the self-assembly of small CMPs. In...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-016-2312-2

    authors: Huang PW,Chang JM,Horng JC

    更新日期:2016-12-01 00:00:00

  • Disturbance of erythrocyte lipid bilayer by amino acid-based surfactants.

    abstract::In an attempt to increase our knowledge regarding the mechanisms of surfactant membrane interaction, we studied the action of several anionic and cationic amino acid-based surfactants on membrane fluidity using fluorescence anisotropy. Anisotropy measurements demonstrated that almost all of the surfactants studied dis...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-006-0447-2

    authors: Martínez V,Sánchez L,Busquets MA,Infante MR,Pilar Vinardell M,Mitjans M

    更新日期:2007-09-01 00:00:00

  • SCL-Epred: a generalised de novo eukaryotic protein subcellular localisation predictor.

    abstract::Knowledge of the subcellular location of a protein provides valuable information about its function, possible interaction with other proteins and drug targetability, among other things. The experimental determination of a protein's location in the cell is expensive, time consuming and open to human error. Fast and acc...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-013-1491-3

    authors: Mooney C,Cessieux A,Shields DC,Pollastri G

    更新日期:2013-08-01 00:00:00

  • Non-covalent binding of azo compound to peptide chain: interactions of biebrich scarlet and naphthochrome green with four model proteins.

    abstract::We studied the non-specific interactions of two azo compounds: biebrich scarlet (BS) and naphthochrome green (NG), with four model proteins: bovine serum albumin, ovalbumin, poly-L-lysine and hemoglobin by UV-VIS spectrometry, fluorophotometry and circular dichroism melting technique. The optimal acidities of NG and B...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-008-0058-1

    authors: Gao HW,Liu XH,Qiu Z,Tan L

    更新日期:2009-02-01 00:00:00

  • Glycine metabolism in animals and humans: implications for nutrition and health.

    abstract::Glycine is a major amino acid in mammals and other animals. It is synthesized from serine, threonine, choline, and hydroxyproline via inter-organ metabolism involving primarily the liver and kidneys. Under normal feeding conditions, glycine is not adequately synthesized in birds or in other animals, particularly in a ...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-013-1493-1

    authors: Wang W,Wu Z,Dai Z,Yang Y,Wang J,Wu G

    更新日期:2013-09-01 00:00:00

  • Lipidated peptides via post-synthetic thioalkylation promoted by molecular sieves.

    abstract::A thioalkylation procedure, which uses molecular sieves to promote the reaction, was exploited to provide peptides with useful functional groups (lipidic moieties), naturally occurring on proteins as post-translational modifications. The procedure was further implemented to synthesize tailor-made lipidated peptides, i...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-014-1742-y

    authors: Calce E,Leone M,Monfregola L,De Luca S

    更新日期:2014-08-01 00:00:00

  • Intracellular sources of ornithine for polyamine synthesis in endothelial cells.

    abstract::Polyamines are essential for proliferation of endothelial cells (EC) and angiogenesis. This study was conducted to identify the metabolic source(s) of ornithine for polyamine synthesis in EC, using N(ω)-hydroxy-nor-L-arginine (Nor-NOHA, an inhibitor of arginase) and gabaculine (an inhibitor of ornithine aminotransfera...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-016-2256-6

    authors: Li H,Meininger CJ,Bazer FW,Wu G

    更新日期:2016-10-01 00:00:00

  • N-acetylcysteine reduces inflammation in the small intestine by regulating redox, EGF and TLR4 signaling.

    abstract::This study determined whether N-acetylcysteine (NAC) could affect intestinal redox status, proinflammatory cytokines, epidermal growth factor (EGF), EGF receptor (EGFR), Toll-like receptor-4 (TLR4), and aquaporin-8 in a lipopolysaccharide (LPS)-challenged piglet model. Eighteen piglets (35-day-old) were randomly alloc...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-012-1295-x

    authors: Hou Y,Wang L,Yi D,Ding B,Yang Z,Li J,Chen X,Qiu Y,Wu G

    更新日期:2013-09-01 00:00:00

  • Identification and bioactivity evaluation of the first neuropeptide from the lesser-known insect order Embioptera (webspinner).

    abstract::A species of the poorly studied order Embioptera, the webspinner Oligotoma saundersii, is investigated for its complement of neuropeptides of the adipokinetic hormone (AKH) family. A methanolic extract of its corpora cardiaca (CC) is able to effect carbohydrate mobilization in the cockroach, Periplaneta americana, and...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-016-2229-9

    authors: Gäde G,Šimek P,Marco HG

    更新日期:2016-07-01 00:00:00

  • Transglutaminases: future perspectives.

    abstract::This is the third special issue focused on "Transglutaminases" that is now available on this journal and dedicated to one of the pioneers of these enzymes, John Edward Folk, who died December 2010 [see in this issue Beninati et al. 2012a]. The first edition, "Polyamines and Transglutaminases" was published in Amino Ac...

    journal_title:Amino acids

    pub_type: 社论

    doi:10.1007/s00726-012-1431-7

    authors: Beninati S,Facchiano F,Piacentini M

    更新日期:2013-01-01 00:00:00

  • Expression and function of arginine-producing and consuming-enzymes in the kidney.

    abstract::The kidney plays a key role in arginine metabolism. Arginine production is controlled by argininosuccinate synthetase (ASS) and argininosuccinate lyase (ASL) which metabolize citrulline and aspartate to arginine and fumarate whereas arginine consumption is dependent on arginine:glycine amidinotransferase (GAT), which ...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-011-0897-z

    authors: Levillain O

    更新日期:2012-04-01 00:00:00

  • The lysine glycation 1. A preliminary investigation on the products arising from the reaction of protected lysine and D-glucose.

    abstract::The nature of the products arising from a 10 days, sterile incubation at 37°C and pH 7.2 of a 1:1 mixture of N-α-(p-tosyl)-lysine-methylesterhydrochloride and anhydrous D-glucose was investigated by fast atom bombardment mass spectrometry and(1)H and(13)C nuclear magnetic resonance spectroscopies. Differently to the r...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/BF00806957

    authors: Lapolla A,Gerhardinger C,Baldo L,Fedele D,Bertani R,Facchin G,Rizzi E,Catinella S,Seraglia R,Traldi P

    更新日期:1993-10-01 00:00:00

  • Antizyme inhibitor 2: molecular, cellular and physiological aspects.

    abstract::Polyamines are small organic polycations essential for cell proliferation and survival. Antizymes (AZs) are small proteins regulated by polyamines that inhibit polyamine biosynthesis and uptake in mammalian cells. In addition, antizyme functions are also regulated by antizyme inhibitors, homologue proteins of ornithin...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-009-0419-4

    authors: López-Contreras AJ,Ramos-Molina B,Cremades A,Peñafiel R

    更新日期:2010-02-01 00:00:00

  • SILAC-based proteomic analysis to dissect the "histone modification signature" of human breast cancer cells.

    abstract::In living cells, the N-terminal tails of core histones, the proteinaceous component of nucleosomes, are subjected to a range of covalent post-translational modifications (PTMs), which have specific roles in modulating chromatin structure and function. A growing body of evidence suggests that deregulation of histone mo...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-010-0668-2

    authors: Cuomo A,Moretti S,Minucci S,Bonaldi T

    更新日期:2011-07-01 00:00:00

  • Strategies to improve plasma half life time of peptide and protein drugs.

    abstract::Due to the obvious advantages of long-acting peptide and protein drugs, strategies to prolong plasma half life time of such compounds are highly on demand. Short plasma half life times are commonly due to fast renal clearance as well as to enzymatic degradation occurring during systemic circulation. Modifications of t...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-005-0289-3

    authors: Werle M,Bernkop-Schnürch A

    更新日期:2006-06-01 00:00:00

  • Libraries of atomic multipole moments for precise modeling of electrostatic properties of amino acids.

    abstract::Contemporary theoretical models used in describing electrostatic properties of amino acids in polypeptides rely usually on atomic point charges. Recently noted defects of such models in reproducing protein folding originate from the inadequate representation of the electrostatic term, in particular inability of atomic...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/BF00808443

    authors: Sokalski W

    更新日期:1994-02-01 00:00:00

  • In vivo targeting of HER2-positive tumor using 2-helix affibody molecules.

    abstract::Molecular imaging of human epidermal growth factor receptor type 2 (HER2) expression has drawn significant attention because of the unique role of the HER2 gene in diagnosis, therapy and prognosis of human breast cancer. In our previous research, a novel cyclic 2-helix small protein, MUT-DS, was discovered as an anti-...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-011-1096-7

    authors: Ren G,Webster JM,Liu Z,Zhang R,Miao Z,Liu H,Gambhir SS,Syud FA,Cheng Z

    更新日期:2012-07-01 00:00:00

  • Polyamine levels during the onset of "CAM" inOpuntia F. indica (Miller).

    abstract::Polyamines have been related to the "Crassulacean Acid Metabolism" (CAM) in higher plants. Such relationship was however observed in plants where CAM activity is inducible by external factors. Results presented here indicate that, inOpuntia F. indica, cladodes where onset of CAM is dependent on internal conditions, i....

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/BF00814160

    authors: Deidda P,Tekle Z,Nieddu G,Pintus G,Pinna GG,Sisini A

    更新日期:1994-06-01 00:00:00

  • Composition of polyamines and amino acids in plant-source foods for human consumption.

    abstract::Dietary polyamines and amino acids (AAs) are crucial for human growth, development, reproduction, and health. However, the scientific literature shows large variations in polyamine and AA concentrations among major staple foods of plant origin, and there is a scarcity of information regarding their complete compositio...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-019-02751-0

    authors: Hou Y,He W,Hu S,Wu G

    更新日期:2019-08-01 00:00:00

  • In silico investigation of molecular mechanism of laminopathy caused by a point mutation (R482W) in lamin A/C protein.

    abstract::Lamin A/C proteins are the major components of a thin proteinaceous filamentous meshwork, the lamina, that underlies the inner nuclear membrane. A few specific mutations in the lamin A/C gene cause a disease with remarkably different clinical features: FPLD, or familial partial lipodystrophy (Dunnigan-type), which mai...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-011-1108-7

    authors: Rajendran V,Purohit R,Sethumadhavan R

    更新日期:2012-08-01 00:00:00

  • The neuronal differentiation process involves a series of antioxidant proteins.

    abstract::Involvement of individual antioxidant proteins (AOXP) and antioxidants in the differentiation process has been already reported. A systematic search strategy for detecting differentially regulated AOXP in neuronal differentiation, however, has not been published so far. The aim of this study was to provide an analytic...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-005-0214-9

    authors: Oh JE,Karlmark Raja K,Shin JH,Hengstschläger M,Pollak A,Lubec G

    更新日期:2005-11-01 00:00:00

  • Molecular imaging of fibrosis using a novel collagen-binding peptide labelled with 99mTc on SPECT/CT.

    abstract::Fibrosis, closely related to chronic various diseases, is a pathological process characterised by the accumulation of collagen (largely collagen type I). Non-invasive methods are necessary for the diagnosis and follow-up of fibrosis. This study aimed to develop a collagen-targeted probe for the molecular imaging of fi...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-016-2328-7

    authors: Zheng L,Ding X,Liu K,Feng S,Tang B,Li Q,Huang D,Yang S

    更新日期:2017-01-01 00:00:00

  • A strong developmental isotope effect in Caenorhabditis elegans induced by 5,5-deuterated lysine.

    abstract::Effects exerted by heavy isotope substitution in biopolymers on the functioning of whole organisms have not been investigated. We report on the decrease of permissive temperature of nematodes fed with bacteria containing 5,5-D2-lysine. We synthesized 5,5-dideuterolysine and, taking advantage of lysine being an essenti...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-017-2386-5

    authors: Korneenko TV,Pestov NB,Hurski AL,Fedarkevich AM,Shmanai VV,Brenna JT,Shchepinov MS

    更新日期:2017-05-01 00:00:00

  • A novel method for promoting heterologous protein expression in Escherichia coli by fusion with the HIV-1 TAT core domain.

    abstract::The human immunodeficiency virus type 1 (HIV-1) transactivator of transcription (TAT) protein, a member of the protein transduction domain (PTD) superfamily, can deliver heterologous proteins across most biomembranes without losing bioactivity. However, there is no report on whether the TAT core domain containing the ...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-010-0534-2

    authors: Wu Y,Ren C,Gao Y,Hou B,Chen T,Zhang C

    更新日期:2010-08-01 00:00:00

  • Arginine revisited: minireview article.

    abstract::Arginine is a precursor of proteins and employed in urea synthesis. It is also the precursor of many other compounds, such as creatine, nitric oxide, polyamines, agmatine, proline. In this review, its transport and that of other basic amino acids are examined, along with its transformation into nitric oxide, agmatine ...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-004-0081-9

    authors: Grillo MA,Colombatto S

    更新日期:2004-07-01 00:00:00

  • Ca2+ -independent effects of spermine on pyruvate dehydrogenase complex activity in energized rat liver mitochondria incubated in the absence of exogenous Ca2+ and Mg2+.

    abstract::In the absence of exogenous Ca(2+) and Mg(2+) and in the presence of EGTA, which favours the release of endogenous Ca(2+), the polyamine spermine is able to stimulate the activity of pyruvate dehydrogenase complex (PDC) of energized rat liver mitochondria (RLM). This stimulation exhibits a gradual concentration-depend...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-008-0099-5

    authors: Pezzato E,Battaglia V,Brunati AM,Agostinelli E,Toninello A

    更新日期:2009-03-01 00:00:00

  • The gastro-intestinal tract as the major site of biological action of dietary melanoidins.

    abstract::Emerging evidence from laboratory researches has highlighted the bioactivity of food melanoidins and melanoproteins. Whilst such studies have been carried out with different in vitro systems, information about melanoidins absorption and bio-availability are scarce. However, they are generally considered as poorly abso...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-015-1951-z

    authors: Tagliazucchi D,Bellesia A

    更新日期:2015-06-01 00:00:00