Comparative 2D NMR studies of human insulin and des-pentapeptide insulin: sequential resonance assignment and implications for protein dynamics and receptor recognition.

Abstract:

:The solution structure and dynamics of human insulin are investigated by 2D 1H NMR spectroscopy in reference to a previously analyzed analogue, des-pentapeptide(B26-B30) insulin (DPI; Hua, Q.X., & Weiss, M.A. (1990) Biochemistry 29, 10545-10555). This spectroscopic comparison is of interest since (i) the structure of the C-terminal region of the B-chain has not been determined in the monomeric state and (ii) the role of this region in binding to the insulin receptor has been the subject of long-standing speculation. The present NMR studies are conducted in the presence of an organic cosolvent (20% acetic acid), under which conditions both proteins are monomeric and stably folded. Complete sequential assignment of human insulin is obtained and leads to the following conclusions. (1) The secondary structure of the insulin monomer (three alpha-helices and B-chain beta-turn) is similar to that observed in the 2-Zn crystal state. (2) The folding of DPI is essentially the same as the corresponding portion of intact insulin, in accord with the similarities between their respective crystal structures. However, differences between insulin and DPI are observed in the extent of conformational broadening of amide resonances, indicating that the presence or absence of residues B26-B30 influences the overall dynamics of the protein on the millisecond time scale. (3) Residues B24-B28 adopt an extended configuration in the monomer and pack against the hydrophobic core as in crystallographic dimers; residues B29 and B30 are largely disordered. This configuration differs from that described in a more organic milieu (35% acetonitrile; Kline, A.D., & Justice, R.M., Jr. (1990) Biochemistry 29, 2906-2913), suggesting that the conformation of insulin in the latter study may have been influenced by solvent composition. (4) The insulin fold is shown to provide a model for collective motions in a protein with implications for the mechanism of protein-protein recognition. To our knowledge, this paper describes the first detailed analysis of a protein NMR spectrum under conditions of extensive conformational broadening. Such an analysis is made possible in the present case by comparative study of an analogue (DPI) with more tractable spectroscopic properties.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Hua QX,Weiss MA

doi

10.1021/bi00236a025

subject

Has Abstract

pub_date

1991-06-04 00:00:00

pages

5505-15

issue

22

eissn

0006-2960

issn

1520-4995

journal_volume

30

pub_type

杂志文章
  • Studies on the hydrolytic properties of (serine) carboxypeptidase Y.

    abstract::The activity of serine carboxypeptidases is dependent on a catalytic triad, an oxyanion hole, and a binding site equivalent to those found in the serine endopeptidases. The action of carboxypeptidase Y on substrates containing amino acids, alcohols, and amines as leaving groups is described. It is demonstrated that th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952758e

    authors: Stennicke HR,Mortensen UH,Breddam K

    更新日期:1996-06-04 00:00:00

  • Nonphotochemical quenching of excitation energy in photosystem II. A picosecond time-resolved study of the low yield of chlorophyll a fluorescence induced by single-turnover flash in isolated spinach thylakoids.

    abstract::Chlorophyll a fluorescence emission is widely used as a noninvasive measure of a number of parameters related to photosynthetic efficiency in oxygenic photosynthetic organisms. The most important component for the estimation of photochemistry is the relative increase in fluorescence yield between dark-adapted samples ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9806854

    authors: Vasil'ev S,Bruce D

    更新日期:1998-08-04 00:00:00

  • Influence of ligation state and concentration of hemoglobin A on its cross-linking by glycolaldehyde: functional properties of cross-linked, carboxymethylated hemoglobin.

    abstract::The ligation state of hemoglobin during its cross-linking by glycolaldehyde influences the ultimate oxygen affinity of the cross-linked protein. Thus, if the cross-linking is performed with carbonmonoxy-hemoglobin, the oxygen affinity increases slightly to a P50 of 7 mmHg from a P50 of 9 mmHg for unmodified hemoglobin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00417a064

    authors: Manning LR,Manning JM

    更新日期:1988-08-23 00:00:00

  • Purification and characterization of the purE, purK, and purC gene products: identification of a previously unrecognized energy requirement in the purine biosynthetic pathway.

    abstract::Aminoimidazole riobnucleotide carboxylase, the sixth step in the purine biosynthetic pathway, catalyzes the conversion of aminoimidazole ribonucleotide (AIR) to carboxyaminoimidazole ribonucleotide (CAIR). The gene products of the purE and purK genes (PurE and PurK, respectively) thought to be responsible for this act...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00136a016

    authors: Meyer E,Leonard NJ,Bhat B,Stubbe J,Smith JM

    更新日期:1992-06-02 00:00:00

  • Mid- to low-frequency Fourier transform infrared spectra of S-state cycle for photosynthetic water oxidation in Synechocystis sp. PCC 6803.

    abstract::Flash-induced Fourier transform infrared (FTIR) difference spectra for the four-step S-state cycle and the effects of global (15)N- and (13)C-isotope labeling on the difference spectra were examined for the first time in the mid- to low-frequency (1200-800 cm(-1)) as well as the mid-frequency (1700-1200 cm(-1)) region...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0362323

    authors: Yamanari T,Kimura Y,Mizusawa N,Ishii A,Ono TA

    更新日期:2004-06-15 00:00:00

  • Pyridoxamine-pyruvate transaminase. 1. Determination of the active site stoichiometry and the pH dependence of the dissociation constant for 5'-deoxypyridoxal.

    abstract::Spectrophotometric titration of pyridoxamine-pyruvate transaminase (EC 2.6.1.30) with pyridoxal at pH 7.15 gives four equivalent binding sites per tetramer. The pH dependence of the equilibrium constant for the association of 5'-deoxypyridoxal with the active site lysine residue was determined spectrophotometrically. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00643a013

    authors: Gilmer PJ,McIntire WS,Kirsch JF

    更新日期:1977-11-29 00:00:00

  • Quantitative analysis of lipid-lipid and lipid-protein interactions in membranes by use of pyrene-labeled phosphoinositides.

    abstract::The lateral and rotational dynamics of phosphoinositides and their interactions with proteins were characterized using pyrene-labeled lipid analogues. In these systems, the collision frequency of pyrene-labeled lipids was studied by monitoring the monomeric pyrene fluorescence yield as a function of their mole fractio...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00028a022

    authors: Pap EH,Hanicak A,van Hoek A,Wirtz KW,Visser AJ

    更新日期:1995-07-18 00:00:00

  • Activated leukocytes oxidatively damage DNA, RNA, and the nucleotide pool through halide-dependent formation of hydroxyl radical.

    abstract::A variety of chronic inflammatory conditions are associated with an increased risk for the development of cancer. Because of the numerous links between DNA oxidative damage and carcinogenesis, a potential role for leukocyte-generated oxidants in these processes has been suggested. In the present study, we demonstrate ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992809y

    authors: Shen Z,Wu W,Hazen SL

    更新日期:2000-05-09 00:00:00

  • Binding of Ca2+ to the calcium adenosinetriphosphatase of sarcoplasmic reticulum.

    abstract::The binding of Ca2+ and the resulting change in catalytic specificity that allows phosphorylation of the calcium ATPase of sarcoplasmic reticulum by ATP were examined by measuring the amount of phosphoenzyme formation from [32P]ATP, or 45Ca incorporation into vesicles, after the simultaneous addition of ATP and EGTA a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00423a018

    authors: Petithory JR,Jencks WP

    更新日期:1988-11-15 00:00:00

  • N-glycosyl bond formation catalyzed by human alkyladenine DNA glycosylase.

    abstract::The removal of damaged bases by DNA glycosylases is thought to be effectively irreversible, because of an overall equilibrium that favors hydrolysis over synthesis of the N-glycosyl bond. Surprisingly, human alkyladenine DNA glycosylase (AAG) can make damaged DNA by catalyzing formation of an N-glycosyl bond between 1...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101380d

    authors: Admiraal SJ,O'Brien PJ

    更新日期:2010-10-26 00:00:00

  • Structures of human carbonic anhydrase II/inhibitor complexes reveal a second binding site for steroidal and nonsteroidal inhibitors.

    abstract::Carbonic anhydrase (CA) catalyzes the reversible hydration of carbon dioxide to hydrogen carbonate, and its role in maintaining pH balance has made it an attractive drug target. Steroidal sulfamate esters, inhibitors of the cancer drug target steroid sulfatase (STS), are sequestered in vivo by CA II in red blood cells...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi902178w

    authors: Cozier GE,Leese MP,Lloyd MD,Baker MD,Thiyagarajan N,Acharya KR,Potter BV

    更新日期:2010-04-27 00:00:00

  • Assembly of microtubules from tubulin bearing the nonhydrolyzable guanosine triphosphate analogue GMPPCP [guanylyl 5'-(beta, gamma-methylenediphosphonate)]: variability of growth rates and the hydrolysis of GTP.

    abstract::The growth and shortening of microtubules in guanosine triphosphate-(GTP-) mediated dynamic instability has previously been observed to occur at rates which are remarkably variable (Gildersleeve et al., 1992, Chrétien et al., 1995). Neighboring microtubules observed simultaneously can grow or shorten at different rate...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961070e

    authors: Dye RB,Williams RC Jr

    更新日期:1996-11-12 00:00:00

  • Structural characterization and optimization of antibody-selected phage library mimotopes of an antigen associated with autoimmune recurrent thrombosis.

    abstract::The presence of high titers of anti-cardiolipin antibodies (ACA's) of autoimmune origin, which are known to bind to plasma beta2-glycoprotein I (aka apolipoprotein H), correlates clinically with autoimmune recurrent thrombosis. Soluble beta2-glycoprotein I binds to solid-phase ACA (immobilized on a surface plasmon res...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9807207

    authors: Sem DS,Baker BL,Victoria EJ,Jones DS,Marquis D,Yu L,Parks J,Coutts SM

    更新日期:1998-11-17 00:00:00

  • The complete amino acid sequence of ubiquitin, an adenylate cyclase stimulating polypeptide probably universal in living cells.

    abstract::The complete amino acid sequence was determined for bovine ubiquitin, and adenylate cyclase stimulating polypeptide, which is probably represented universally in living cells. Ubiquitin has a molecular weight of 8451 and consists of a single polypeptide chain containing 74 amino acid residues. It contains four argini...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00681a026

    authors: Schlesinger DH,Goldstein G,Niall HD

    更新日期:1975-05-20 00:00:00

  • Characterization of a naphthalene dioxygenase endowed with an exceptionally broad substrate specificity toward polycyclic aromatic hydrocarbons.

    abstract::In Sphingomonas CHY-1, a single ring-hydroxylating dioxygenase is responsible for the initial attack of a range of polycyclic aromatic hydrocarbons (PAHs) composed of up to five rings. The components of this enzyme were separately purified and characterized. The oxygenase component (ht-PhnI) was shown to contain one R...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0611311

    authors: Jouanneau Y,Meyer C,Jakoncic J,Stojanoff V,Gaillard J

    更新日期:2006-10-10 00:00:00

  • Hydrolysis of tri- and monoacylglycerol by lipoprotein lipase: evidence for a common active site.

    abstract::The relationship between triacylglycerol and monoacylglycerol hydrolyzing activities of purified rat heart lipoprotein lipase was studied using emulsified trioleoylglycerol and micellar or albumin-bound monooleoylglycerol as substrates. The maximal reaction rates obtained with the two substrates were similar (650 and ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00654a017

    authors: Twu JS,Nilsson-Ehle P,Schotz MC

    更新日期:1976-05-04 00:00:00

  • Calcium ionophore increases amyloid beta peptide production by cultured cells.

    abstract::Amyloid beta peptide (A beta) is released into the media of a variety of cells in culture during normal metabolism. The discovery of several missense mutations within or flanking the A beta region of the beta amyloid precursor protein (beta APP) in familial Alzheimer's disease provides strong evidence for a role of al...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00181a016

    authors: Querfurth HW,Selkoe DJ

    更新日期:1994-04-19 00:00:00

  • Characterization and topology of the membrane domain Nqo10 subunit of the proton-translocating NADH-quinone oxidoreductase of Paracoccus denitrificans.

    abstract::The proton-translocating NADH-quinone oxidoreductase (NDH-1) of Paracoccus denitrificans is composed of 14 different subunits (Nqo1-Nqo14). Of these, seven subunits (Nqo7, Nqo8, and Nqo10-14) which are equivalent to the mitochondrial DNA-encoded subunits of complex I constitute the membrane segment of the enzyme compl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034166z

    authors: Kao MC,Di Bernardo S,Matsuno-Yagi A,Yagi T

    更新日期:2003-04-22 00:00:00

  • Cold denaturation of the molten globule states of apomyoglobin and a profile for protein folding.

    abstract::Protein folding is a process in which an extended polypeptide chain acquires compact packing through the formation of specific secondary and tertiary structures and hydrophobic interactions. Although much attention has been paid to secondary and tertiary structures, there is no definitive view about the relationship b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00182a019

    authors: Nishii I,Kataoka M,Tokunaga F,Goto Y

    更新日期:1994-04-26 00:00:00

  • Labeling of two different regions of the nucleotide binding site of the uncoupling protein from brown adipose tissue mitochondria with two ATP analogs.

    abstract::The nucleotide binding site of the uncoupling protein (UCP) from brown adipose tissue was mapped by photoaffinity labeling with 2-azidoadenosine 5'-triphosphate (2-azido-ATP) and by affinity labeling with 3'-O-(5-fluoro-2,4-dinitrophenyl)adenosine 5'-triphosphate (FDNP-ATP). Both analogs bind with high affinity and sp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00158a017

    authors: Mayinger P,Klingenberg M

    更新日期:1992-11-03 00:00:00

  • Transthyretin mutation Leu-55-Pro significantly alters tetramer stability and increases amyloidogenicity.

    abstract::A recently reported variant of human transthyretin (TTR), Leu-55-Pro, implicated as the causative agent in early-onset familial amyloid polyneuropathy was expressed and characterized, and its denaturation pathway and amyloidogenicity were compared to those of wild-type transthyretin. The overlap-extension polymerase c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00096a024

    authors: McCutchen SL,Colon W,Kelly JW

    更新日期:1993-11-16 00:00:00

  • Metal-catalyzed oxidation of protein-bound dopamine.

    abstract::Dopamine (DA) is an unstable neurotransmitter that readily oxidizes to the DA quinone and forms reactive oxygen species, such as superoxide and hydrogen peroxide. The oxidized dopamine also forms thiol conjugates with sulfhydryl groups on cysteine, glutathione, and proteins. In the present study, we determined the red...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0614434

    authors: Akagawa M,Ishii Y,Ishii T,Shibata T,Yotsu-Yamashita M,Suyama K,Uchida K

    更新日期:2006-12-19 00:00:00

  • Photogenerated reagents for membrane labeling. 2. Phenylcarbene and adamantylidene formed within the lipid bilayer.

    abstract::Phenylcarbene and adamantylidene have been generated photochemically from the corresponding diazirines within lipid bilayers. Reasonable yields of labeled fatty acid side chains have been observed. The products have been characterized by gas chromatography-mass spectrometry and derive both from the insertion of the c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00605a026

    authors: Bayley H,Knowles JR

    更新日期:1978-06-13 00:00:00

  • Rapid isolation of OmpF porin-LPS complexes suitable for structure-function studies.

    abstract::A gentle and rapid isolation procedure is described yielding fractions containing better than 95% pure OmpF porin of Escherichia coli BE with different amounts of bound lipopolysaccharide (LPS). The procedure employs continuous free-flow electrophoresis (FFE) in the presence of detergent above its critical micelle con...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00436a010

    authors: Holzenburg A,Engel A,Kessler R,Manz HJ,Lustig A,Aebi U

    更新日期:1989-05-16 00:00:00

  • Aromatic thiol pKa effects on the folding rate of a disulfide containing protein.

    abstract::The production of proteins via recombinant DNA technology often requires the in vitro folding of inclusion bodies, which are protein aggregates. To create a more efficient redox buffer for the in vitro folding of disulfide containing proteins, aromatic thiols were investigated for their ability to increase the folding...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034305c

    authors: Gough JD,Gargano JM,Donofrio AE,Lees WJ

    更新日期:2003-10-14 00:00:00

  • Incorporation of trifluoromethionine into a phage lysozyme: implications and a new marker for use in protein 19F NMR.

    abstract::Much interest is currently focused on understanding the detailed contribution that particular amino acid residues make in protein structure and function. Although the use of site-directed mutagenesis has greatly contributed to this goal, the approach is limited to the standard repertoire of twenty amino acids. Fluorin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9617973

    authors: Duewel H,Daub E,Robinson V,Honek JF

    更新日期:1997-03-18 00:00:00

  • Ligand-dependent aggregation and cooperativity: a critique.

    abstract::Ligand-dependent site-site (or subunit-subunit) interactions provide the basis for explaining cooperativity in chemical reactions. Even in the simplest possible nonaggregating system, interpretation of the interactions in terms of structural details requires an explicit assumption (or model) for the binding of the lig...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi00106a004

    authors: Saroff HA

    更新日期:1991-10-22 00:00:00

  • Intrastrand DNA cross-links as tools for studying DNA replication and repair: two-, three-, and four-carbon tethers between the N(2) positions of adjacent guanines.

    abstract::A general protocol for preparation of oligonucleotides containing intrastrand cross-links between the exocyclic amino groups of adjacent deoxyguanosines has been developed. A series of 2, 3, and 4 methylene cross-links was incorporated site-specifically into an 11-mer (5'-GGCAGGTGGTG-3', cross-linked positions are und...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010450j

    authors: Kowalczyk A,Carmical JR,Zou Y,Van Houten B,Lloyd RS,Harris CM,Harris TM

    更新日期:2002-03-05 00:00:00

  • Interaction between the antiapoptotic protein Nr-13 and cytochrome c. Antagonistic effect of the BH3 domain of Bax.

    abstract::Mitochondria act as a focal point for upstream apoptosis signals by releasing cytochrome c into the cytosol, leading to the activation of caspases and subsequent cell death. Members of the Bcl-2 protein family regulate this phenomenon by heterodimerization via the BH3 domain of proapoptotic members opposing their pro-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0110286

    authors: Moradi-Améli M,Lorca T,Ficheux D,di Pietro A,Gillet G

    更新日期:2002-07-09 00:00:00

  • High-resolution phosphorus nuclear magnetic resonance spectroscopy of transfer ribonucleic acids: multiple conformations in the anticodon loop.

    abstract::The temperature dependence of the 31P NMR spectra of yeast phenylalanine tRNA, E. coli tyrosine, glutamate (2), and formylmethionine tRNA is presented. The major difference between the 31P NMR spectra of the different acceptor tRNAs is in the main cluster region between -0.5 and -1.3 ppm. This confirms an earlier assi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00266a018

    authors: Gorenstein DG,Goldfield EM

    更新日期:1982-11-09 00:00:00