Aromatic thiol pKa effects on the folding rate of a disulfide containing protein.

Abstract:

:The production of proteins via recombinant DNA technology often requires the in vitro folding of inclusion bodies, which are protein aggregates. To create a more efficient redox buffer for the in vitro folding of disulfide containing proteins, aromatic thiols were investigated for their ability to increase the folding rate of scrambled RNase A. Scrambled RNase A is fully oxidized RNase A with a relatively random distribution of disulfide bonds. The importance of the thiol pK(a) value was investigated by the analysis of five para-substituted aromatic thiols with pK(a) values ranging from 5.2 to 6.6. Folding was measured at pH 6.0 where the pK(a) value of the thiols would be higher, lower, or equal to the solution pH. Thus, relative concentrations of thiol and thiolate would vary across the series. At pH 6.0, the aromatic thiols increased the folding rate of RNase A by a factor of 10-23 over that observed for glutathione, the standard additive. Under optimal conditions, the apparent rate constant increased as the thiol pK(a) value decreased. Optimal conditions occurred when the concentration of protonated thiol in solution was approximately 2 mM, although the total thiol concentration varied considerably. The importance of the concentration of protonated thiol in solution can be understood based on equilibrium effects. Kinetic studies suggest that the redox buffer participates as the nucleophile and/or the center thiol in the key rate determining thiol disulfide interchange reactions that occur during protein folding. Aromatic thiols proved to be kinetically faster and more versatile than classical aliphatic thiol redox buffers.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Gough JD,Gargano JM,Donofrio AE,Lees WJ

doi

10.1021/bi034305c

subject

Has Abstract

pub_date

2003-10-14 00:00:00

pages

11787-97

issue

40

eissn

0006-2960

issn

1520-4995

journal_volume

42

pub_type

杂志文章
  • Structural and dynamic study of the tetramerization region of non-erythroid alpha-spectrin: a frayed helix revealed by site-directed spin labeling electron paramagnetic resonance.

    abstract::The N-terminal region of alpha-spectrin is responsible for its association with beta-spectrin in a heterodimer, forming functional tetramers. Non-erythroid alpha-spectrin (alphaII-spectrin) has a significantly higher association affinity for beta-spectrin than the homologous erythroid alpha-spectrin (alphaI-spectrin)....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8013032

    authors: Li Q,Fung LW

    更新日期:2009-01-13 00:00:00

  • Pyridoxal 5'-phosphate binding site of pig heart alanine aminotransferase.

    abstract::After borohydride reduction, carboxymethylation, and tryptic digestion of the holoenzyme of pig heart alanine aminotransferase, a single icosapeptide containing the N6-(phosphopyridoxyl)lysine residue was isolated by a combination of gel filtration and ion-exchange chromatogrpahy. Its primary structure was determined ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00581a015

    authors: Tanase S,Kojima H,Morino Y

    更新日期:1979-07-10 00:00:00

  • Expression of cytochrome P-450 and albumin genes in rat liver: effect of xenobiotics.

    abstract::Thioacetamide, a hepatocarcinogen and an inhibitor of heme synthesis, blocks the phenobarbitone-mediated increase in the transcription of cytochrome P-450b+e messenger RNA in rat liver. This property is also shared by CoCl2 and 3-amino-1,2,4-triazole, two other inhibitors of heme synthesis. Thus, it appears feasible t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00364a009

    authors: Satyabhama S,Seelan RS,Padmanaban G

    更新日期:1986-08-12 00:00:00

  • Electronic absorption, EPR, and resonance raman spectroscopy of CooA, a CO-sensing transcription activator from R. rubrum, reveals a five-coordinate NO-heme.

    abstract::Electronic absorption, EPR, and resonance Raman spectroscopies revealed that CooA, the CO-sensing transcriptional regulator from Rhodospirillum rubrum, reacts with NO to form a five-coordinate NO-heme. NO must therefore displace both of the heme ligands from six-coordinate, low-spin Fe(II)CooA in forming five-coordina...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991378g

    authors: Reynolds MF,Parks RB,Burstyn JN,Shelver D,Thorsteinsson MV,Kerby RL,Roberts GP,Vogel KM,Spiro TG

    更新日期:2000-01-18 00:00:00

  • Ligand Design for Specific MHC Class I Molecules on the Cell Surface.

    abstract::We have validated that ligand peptides designed from antigen peptides could be used for targeting specific major histocompatibility complex class I (MHC-I) molecules on the cell surface. To design the ligand peptides, we used reported antigen peptides for each MHC-I molecule with high binding affinity. From the crysta...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00735

    authors: Sun X,Tokunaga R,Nagai Y,Miyahara R,Kishimura A,Kawakami S,Katayama Y,Mori T

    更新日期:2020-12-15 00:00:00

  • Analysis of 31P NMR spectra of enzyme-bound reactants and products of adenylate kinase using density matrix theory of chemical exchange.

    abstract::31P NMR spectra of equilibrium mixtures of enzyme-bound reactants and products of the adenylate kinase reaction (formula; see text) were analyzed by using computer simulations based on density matrix theory of chemical exchange. Since adenylate kinase has the unique feature that the reactants in the reverse direction ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00300a025

    authors: Vasavada KV,Kaplan JI,Nageswara Rao BD

    更新日期:1984-02-28 00:00:00

  • A General Mechanism for the Propagation of Mutational Effects in Proteins.

    abstract::Mutations in the hydrophobic interior of proteins are generally thought to weaken the interactions only in their immediate neighborhood. This forms the basis of protein engineering-based studies of folding mechanism and function. However, mutational work on diverse proteins has shown that distant residues are thermody...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00798

    authors: Rajasekaran N,Suresh S,Gopi S,Raman K,Naganathan AN

    更新日期:2017-01-10 00:00:00

  • pH-Dependent Binding of Chloride to a Marine Alkaline Phosphatase Affects the Catalysis, Active Site Stability, and Dimer Equilibrium.

    abstract::The effect of ionic strength on enzyme activity and stability varies considerably between enzymes. Ionic strength is known to affect the catalytic activity of some alkaline phosphatases (APs), such as Escherichia coli AP, but how ions affect APs is debated. Here, we studied the effect of various ions on a cold-adapted...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00690

    authors: Hjörleifsson JG,Ásgeirsson B

    更新日期:2017-09-26 00:00:00

  • Structural studies of P22 phage, precursor particles, and proteins by laser Raman spectroscopy.

    abstract::For the study of the protein--protein and protein--nucleic acid interactions in the assembly of virus particles, laser Raman spectra have been obtained in H2O and D2O solutions and as a function of temperature for the following Salmonella phage P22 components: mature phage particles, isolated mature phage DNA, mature ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00259a023

    authors: Thomas GJ Jr,Li Y,Fuller MT,King J

    更新日期:1982-08-03 00:00:00

  • Inhibition of D(--)-beta-hydroxybutyrate dehydrogenase by butanedione, phenylglyoxal, and diethyl pyrocarbonate.

    abstract::D(--)-beta-Hydroxybutyrate dehydrogenase of beef heart mitochondria is inhibited by modifiers of disulfides, thiols, and vicinal dithiols [Phelps, D. C., & Hatefi, Y. (1981) Biochemistry 20 (preceding paper in this issue)]. The vicinal dithiol can be reversibly oxidized by diamide, resulting in activity inhibition, an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00506a002

    authors: Phelps DC,Hatefi Y

    更新日期:1981-02-03 00:00:00

  • Site-specific chemical labeling of mitochondrial respiratory complex I through ligand-directed tosylate chemistry.

    abstract::The site-specific chemical modification of NADH-quinone oxidoreductase (complex I) by various functional probes such as fluorophores and microbeads, without affecting the enzyme activity, may allow single-molecule analyses of putative dynamic conformational changes in the enzyme. In an attempt to address this challeng...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500205x

    authors: Masuya T,Murai M,Ifuku K,Morisaka H,Miyoshi H

    更新日期:2014-04-15 00:00:00

  • Nuclear magnetic resonance studies of 2'- and 3'-ribonucleotide structures in solution.

    abstract::A systematic 220-MHz proton nuclear magnetic resonance (nmr) study has been made of all common purine and pyrimidine 2'(3')-ribonucleotides in D2O solutions at 20 plus or minus 2 degrees. Spectra for the entire series were measured under similar conditions of concentration, temperature, and ionic strength, thereby fac...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00674a013

    authors: Davies DB,Danyluk SS

    更新日期:1975-02-11 00:00:00

  • Synthesis and spectroscopic studies of the aminoglycoside (neomycin)--perylene conjugate binding to human telomeric DNA.

    abstract::Synthesis of a novel perylene-neomycin conjugate (3) and the properties of its binding to human telomeric G-quadruplex DNA, 5'-d[AG3(T2AG3)3] (4), are reported. Various spectroscopic techniques were employed to characterize the binding of conjugate 3 to 4. A competition dialysis assay revealed that 3 preferentially bi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1017304

    authors: Xue L,Ranjan N,Arya DP

    更新日期:2011-04-12 00:00:00

  • Indolequinone inhibitors of NRH:quinone oxidoreductase 2. Characterization of the mechanism of inhibition in both cell-free and cellular systems.

    abstract::We describe a series of indolequinones as efficient mechanism-based inhibitors of NRH:quinone oxidoreductase 2 (NQO2) for use either in cellular or cell-free systems. Compounds were designed to be reduced in the active site of the enzyme leading to loss of a substituted phenol leaving group and generation of a reactiv...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi2002967

    authors: Yan C,Dufour M,Siegel D,Reigan P,Gomez J,Shieh B,Moody CJ,Ross D

    更新日期:2011-08-09 00:00:00

  • Nuclear Magnetic Resonance Solution Structure of DNA Featuring Clustered 2'-Deoxyribonolactone and 8-Oxoguanine Lesions.

    abstract::Ionizing radiation, free radicals, and reactive oxygen species produce hundreds of different DNA lesions. Clustered lesions are typical for ionizing radiation. They compromise the efficiency of the base excision repair (BER) pathway, and as a consequence, they are much more toxic and mutagenic than isolated lesions. D...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00396

    authors: Zálešák J,Constant JF,Jourdan M

    更新日期:2016-07-19 00:00:00

  • Active site of bee venom phospholipase A2: the role of histidine-34, aspartate-64 and tyrosine-87.

    abstract::In bee venom phospholipase A2, histidine-34 probably functions as a Brønsted base to deprotonate the attacking water. Aspartate-64 and tyrosine-87 form a hydrogen bonding network with histidine-34. We have prepared mutants at these positions and studied their kinetic properties. The mutant in which histidine-34 is cha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9528412

    authors: Annand RR,Kontoyianni M,Penzotti JE,Dudler T,Lybrand TP,Gelb MH

    更新日期:1996-04-09 00:00:00

  • Do the structures of big ET-1 and big ET-3 adopt a similar overall fold? Consequences for endothelin converting enzyme specificity.

    abstract::Big ET-1 and big ET-3 are precursor peptides which render endothelin-1 (ET-1) and endothelin-3 (ET-3) relatively unreactive and resistant to proteolytic cleavage. Big ET-1 is cleaved in vivo by ECE-1 (endothelin-converting enzyme), and big ET-3 is also cleaved but apparently to a significantly lesser extent by this en...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981689b

    authors: Cronin NB,Wallace BA

    更新日期:1999-02-09 00:00:00

  • Structural basis for the quinone reduction in the bc1 complex: a comparative analysis of crystal structures of mitochondrial cytochrome bc1 with bound substrate and inhibitors at the Qi site.

    abstract::Cytochrome bc(1) is an integral membrane protein complex essential to cellular respiration and photosynthesis. The Q cycle reaction mechanism of bc(1) postulates a separated quinone reduction (Q(i)) and quinol oxidation (Q(o)) site. In a complete catalytic cycle, a quinone molecule at the Q(i) site receives two electr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0341814

    authors: Gao X,Wen X,Esser L,Quinn B,Yu L,Yu CA,Xia D

    更新日期:2003-08-05 00:00:00

  • Structurally diverse chitolipooligosaccharide nod factors accumulate primarily in membranes of wild type Rhizobium leguminosarum biovar trifolii.

    abstract::The general view on Rhizobium chitolipooligosaccharides (CLOS) is that they are made in very low levels as diffusible molecules and are primarily secreted by the bacteria into the extracellular milieu where they interact with the host. However, the structural and predicted physicochemical properties of these amphiphil...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00011a041

    authors: Orgambide GG,Lee J,Hollingsworth RI,Dazzo FB

    更新日期:1995-03-21 00:00:00

  • An extracellular loop region of the serotonin transporter may be involved in the translocation mechanism.

    abstract::The serotonin transporter (SERT) is a member of a highly homologous family of proteins responsible for the reuptake of biogenic amines from the synaptic cleft. We took advantage of native restriction sites in SERT to construct a chimeric transporter containing a small (34 amino acid) region of the norepinephrine trans...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962150l

    authors: Stephan MM,Chen MA,Penado KM,Rudnick G

    更新日期:1997-02-11 00:00:00

  • Is Arg418 the catalytic base required for the hydrolysis step of the IMP dehydrogenase reaction?

    abstract::The first committed step of guanine nucleotide biosynthesis is the oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5'-monophosphate (XMP) catalyzed by IMP dehydrogenase. The reaction involves the reduction of NAD(+) with the formation of a covalent enzyme intermediate (E-XMP). Hydrolysis of E-XMP requires th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048342v

    authors: Guillén Schlippe YV,Hedstrom L

    更新日期:2005-09-06 00:00:00

  • Calcium-sensitive binding of heavy meromyosin to regulated actin requires light chain 2 and the head-tail junction.

    abstract::Sedimentation in a preparative ultracentrifuge was used to determine the affinity of heavy meromyosin, HMM, for regulated actin, F-actin plus troponin-tropomyosin, in the presence of MgATP at pH 7.0, 20 degrees C, and mu = 18 mM. HMM was prepared from vertebrate striated muscle myosin by a mild chymotryptic digestion....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00275a003

    authors: Wagner PD,Stone DB

    更新日期:1983-03-15 00:00:00

  • Expanding the Genetic Code of a Photoautotrophic Organism.

    abstract::The photoautotrophic freshwater cyanobacterium Synechococcus elongatus is widely used as a chassis for biotechnological applications as well as a photosynthetic bacterial model. In this study, a method for expanding the genetic code of this cyanobacterium has been established, thereby allowing the incorporation of unn...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00131

    authors: Chemla Y,Friedman M,Heltberg M,Bakhrat A,Nagar E,Schwarz R,Jensen MH,Alfonta L

    更新日期:2017-04-25 00:00:00

  • Two types of hydrocarbon chain interdigitation in sphingomyelin bilayers.

    abstract::Vibrational Raman spectroscopic experiments have been performed as a function of temperature on aqueous dispersions of synthetic DL-erythro-N-lignoceroylsphingosylphosphocholine [C(24):SPM], a racemic mixture of two highly asymmetric hydrocarbon chain length sphingomyelins. Raman spectral peak-height intensity ratios ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00343a036

    authors: Levin IW,Thompson TE,Barenholz Y,Huang C

    更新日期:1985-10-22 00:00:00

  • Characterization and purification of the discoidin domain-containing protein retinoschisin and its interaction with galactose.

    abstract::RS1, also known as retinoschisin, is an extracellular discoidin domain-containing protein that has been implicated in maintaining the cellular organization and synaptic structure of the vertebrate retina. Mutations in the gene encoding RS1 are responsible for X-linked retinoschisis, a retinal degenerative disease char...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800938g

    authors: Dyka FM,Wu WW,Pfeifer TA,Molday LL,Grigliatti TA,Molday RS

    更新日期:2008-09-02 00:00:00

  • Amino acid and sequence analysis of the cytochrome and flavoprotein subunits of p-cresol methylhydroxylase.

    abstract::The flavocytochrome p-cresol methylhydroxylase from Pseudomonas putida has been reported to have a Mr of 114,000 and to consist of two subunits, a flavoprotein and a cytochrome c, each with a Mr of 58,000. Recent X-ray crystallographic data from our laboratories [Shamala, N., Lim, L. W., Mathews, F. S., McIntire, W., ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00368a021

    authors: McIntire W,Singer TP,Smith AJ,Mathews FS

    更新日期:1986-10-07 00:00:00

  • The membrane-bound quinohemoprotein alcohol dehydrogenase from Gluconacetobacter diazotrophicus PAL5 carries a [2Fe-2S] cluster.

    abstract::Gluconacetobacter diazotrophicus stands out among the acetic acid bacteria as it fixes dinitrogen and is a true endophyte. It has a set of constitutive enzymes to oxidize ethanol and acetaldehyde which is upregulated during N(2)-dependent growth. The membrane-bound alcohol dehydrogenase (ADH) is a heterodimer (subunit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9015007

    authors: Gómez-Manzo S,Solano-Peralta A,Saucedo-Vázquez JP,Escamilla-Marván JE,Kroneck PM,Sosa-Torres ME

    更新日期:2010-03-23 00:00:00

  • Structure of FAD-bound L-aspartate oxidase: insight into substrate specificity and catalysis.

    abstract::L-Aspartate oxidase (Laspo) catalyzes the conversion of L-Asp to iminoaspartate, the first step in the de novo biosynthesis of NAD(+). This bacterial pathway represents a potential drug target since it is absent in mammals. The Laspo R386L mutant was crystallized in the FAD-bound catalytically competent form and its t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi015939r

    authors: Bossi RT,Negri A,Tedeschi G,Mattevi A

    更新日期:2002-03-05 00:00:00

  • Chromatographic behavior of cyclic AMP dependent protein kinase and its subunits from Dictyostelium discoideum.

    abstract::An adenosine cyclic 3',5'-monophosphate (cAMP) dependent protein kinase has recently been shown to exist in Dictyostelium discoideum and to be developmentally regulated. In this report we have followed the chromatographic behavior of both the holoenzyme and its subunits. A cAMP-dependent holoenzyme could be obtained f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00315a015

    authors: Rutherford CL,Vaughan RL,Cloutier MJ,Ferris DK,Brickey DA

    更新日期:1984-09-25 00:00:00

  • Subunit structure of human erythrocyte glycophorin A.

    abstract::Glycophorin A is a sialoglycoprotein isolated from human erythrocyte membranes which seems to exist as stable dimeric complexes in the presence of sodium dodecyl sulfate. When analyzed by dodecyl sulfate acrylamide electrophoresis this molecule forms two PAS-stainable bands (PAS-U and PAS-2) which are reversibly inter...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00650a028

    authors: Furthmayr H,Marchesi VT

    更新日期:1976-03-09 00:00:00