An extracellular loop region of the serotonin transporter may be involved in the translocation mechanism.

Abstract:

:The serotonin transporter (SERT) is a member of a highly homologous family of proteins responsible for the reuptake of biogenic amines from the synaptic cleft. We took advantage of native restriction sites in SERT to construct a chimeric transporter containing a small (34 amino acid) region of the norepinephrine transporter. The substituted region corresponds to about half of the largest extracellular loop. This chimera transports serotonin very slowly compared to wild type SERT. However, it binds serotonin and the cocaine analog 2beta-carbomethoxy-3beta-(4-[125I]iodophenyl)tropane with a high affinity indistinguishable from wild type. It has the same specificity as wild type SERT for the antidepressants paroxetine and desipramine. The low rate of transport does not appear to be due to poor expression, since the chimeric transporter is expressed at the membrane surface at close to wild type levels as measured by cell surface biotinylation. These observations lead us to conclude that, rather than playing a role in substrate or drug binding, this region of the large extracellular loop may be involved in the conformational changes associated with substrate translocation into the cell.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Stephan MM,Chen MA,Penado KM,Rudnick G

doi

10.1021/bi962150l

subject

Has Abstract

pub_date

1997-02-11 00:00:00

pages

1322-8

issue

6

eissn

0006-2960

issn

1520-4995

pii

bi962150l

journal_volume

36

pub_type

杂志文章
  • Structural basis for herbicidal inhibitor selectivity revealed by comparison of crystal structures of plant and mammalian 4-hydroxyphenylpyruvate dioxygenases.

    abstract::A high degree of selectivity toward the target site of the pest organism is a desirable attribute for new safer agrochemicals. To assist in the design of novel herbicides, we determined the crystal structures of the herbicidal target enzyme 4-hydroxyphenylpyruvate dioxygenase (HPPD; EC 1.13.11.27) from the plant Arabi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049323o

    authors: Yang C,Pflugrath JW,Camper DL,Foster ML,Pernich DJ,Walsh TA

    更新日期:2004-08-17 00:00:00

  • Effect of membrane potential on band 3 conformation in the human erythrocyte membrane detected by triplet state quenching experiments.

    abstract::The triplet lifetime and absorption anisotropy decay of eosin-labeled band 3 was measured in resealed erythrocyte ghosts. Membrane potentials were generated by the addition of valinomycin in the presence of a K+ gradient. Neither negative nor positive membrane potentials had any detectable effect on the rotational dif...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00134a016

    authors: Wyatt K,Cherry RJ

    更新日期:1992-05-19 00:00:00

  • Structural and biochemical studies of a fluoroacetyl-CoA-specific thioesterase reveal a molecular basis for fluorine selectivity.

    abstract::We have initiated a broad-based program aimed at understanding the molecular basis of fluorine specificity in enzymatic systems, and in this context, we report crystallographic and biochemical studies on a fluoroacetyl-coenzyme A (CoA) specific thioesterase (FlK) from Streptomyces cattleya. Our data establish that FlK...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101102u

    authors: Weeks AM,Coyle SM,Jinek M,Doudna JA,Chang MC

    更新日期:2010-11-02 00:00:00

  • Insights into DNA polymerization mechanisms from structure and function analysis of HIV-1 reverse transcriptase.

    abstract::When the single-stranded RNA genome of HIV-1 is copied into double-stranded DNA, the viral enzyme reverse transcriptase (RT) catalyzes the addition of approximately 20,000 nucleotides; however, the precise mechanism of nucleotide addition is unknown. In this study, we attempt to integrate the genetic data and biochemi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00016a006

    authors: Patel PH,Jacobo-Molina A,Ding J,Tantillo C,Clark AD Jr,Raag R,Nanni RG,Hughes SH,Arnold E

    更新日期:1995-04-25 00:00:00

  • A calbindin D9k mutant with reduced calcium affinity and enhanced cooperativity. Metal ion binding, stability, and structural studies.

    abstract::In the native calcium-binding protein calbindin D9k (M(r) 8.700; 75aa; 2 EF-hands), the backbone carbonyl oxygen of Glu60 coordinates the Ca2+ ion in the C-terminal site (site II). The carboxylate group of the same residue forms a hydrogen bond to a water molecule that constitutes a Ca2+ ligand in the N-terminal site ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00207a015

    authors: Linse S,Bylsma NR,Drakenberg T,Sellers P,Forsén S,Thulin E,Svensson LA,Zajtzeva I,Zajtsev V,Marek J

    更新日期:1994-10-18 00:00:00

  • Organellar Na+/H+ exchangers: novel players in organelle pH regulation and their emerging functions.

    abstract::Mammalian Na+/H+ exchangers (NHEs) play a fundamental role in cellular ion homeostasis. NHEs exhibit an appreciable variation in expression, regulation, and physiological function, dictated by their dynamics in subcellular localization and/or interaction with regulatory proteins. In recent years, a subgroup of NHEs co...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi101082e

    authors: Ohgaki R,van IJzendoorn SC,Matsushita M,Hoekstra D,Kanazawa H

    更新日期:2011-02-01 00:00:00

  • Kinetic and thermodynamic studies of tet repressor-tetracycline interaction.

    abstract::Stopped-flow measurements have been employed to study the kinetics of the conformational changes in TetR (B) induced by tetracycline binding with and without Mg(2+) ions. Result of stopped-flow fluorometry measurements at pH 8.0 indicate conformational changes in the helix-turn-helix motif in the N-terminal domain and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048548w

    authors: Kedracka-Krok S,Gorecki A,Bonarek P,Wasylewski Z

    更新日期:2005-01-25 00:00:00

  • Using ethidium to probe nonequilibrium states of DNA condensed for gene delivery.

    abstract::Here we explore the use of ethidium to determine relative affinities of different gene delivery vectors for DNA and describe an improved method for studying the interaction. Specifically, we investigate the binding of poly(amidoamine) dendrimers and show that the DNA-dendrimer-ethidium system is far from thermodynamic...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1015887

    authors: Fant K,Nordén B,Lincoln P

    更新日期:2011-02-22 00:00:00

  • Murine DNA (cytosine-5-)-methyltransferase: steady-state and substrate trapping analyses of the kinetic mechanism.

    abstract::DNA (cytosine-5-)-methyltransferase is essential for viable mammalian development and has a central function in the determination and maintenance of epigenetic methylation patterns. Steady-state and substrate trapping studies were performed to better understand how the enzyme functions. The catalytic efficiency was de...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9810609

    authors: Flynn J,Reich N

    更新日期:1998-10-27 00:00:00

  • Mechanism of inhibition of the (Ca2(+)-Mg2+)-ATPase by nonylphenol.

    abstract::The effects of nonylphenol and 3,5-dibutyl-4-hydroxytoluene (BHT) on the activity of the (Ca2(+)-Mg2+)-ATPase of skeletal muscle sarcoplasmic reticulum have been studied. At high concentrations, both inhibit the ATPase activity of the ATPase either in native lipid or in bilayers of dioleoylphosphatidylcholine but, at ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00464a028

    authors: Michelangeli F,Orlowski S,Champeil P,East JM,Lee AG

    更新日期:1990-03-27 00:00:00

  • Profile hidden Markov models for analyzing similarities and dissimilarities in the bacterial reaction center and photosystem II.

    abstract::The bacterial photosynthetic reaction center is the evolutionary ancestor of the Photosystem II reaction center. These proteins share the same fold and perform the same biological function. Nevertheless, the details of their molecular reaction mechanism differ. It is of significant biological and biochemical interest ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802033k

    authors: Krammer EM,Sebban P,Ullmann GM

    更新日期:2009-02-17 00:00:00

  • Preparation of the Fv fragment from a short-chain mouse IgG2a anti-dansyl monoclonal antibody and use of selectively deuterated Fv analogues for two-dimensional 1H NMR analyses of the antigen-antibody interactions.

    abstract::The Fv fragment, a univalent antigen-binding unit with a molecular weight of 25,000, has successfully been prepared in high yield by limited proteolysis with clostripain of a short-chain mouse IgG2a anti-dansyl monoclonal antibody in which the entire CH1 domain is deleted [Igarashi, T., Sato, M., Takio, K., Tanaka, T....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00225a016

    authors: Takahashi H,Igarashi T,Shimada I,Arata Y

    更新日期:1991-03-19 00:00:00

  • G-1:C73 recognition by an arginine cluster in the active site of Escherichia coli histidyl-tRNA synthetase.

    abstract::Aminoacylation of a transfer RNA (tRNA) by its cognate aminoacyl-tRNA synthetase relies upon the recognition of specific nucleotides as well as conformational features within the tRNA by the synthetase. In Escherichia coli, the aminoacylation of tRNA(His) by histidyl-tRNA synthetase (HisRS) is highly dependent upon th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035708f

    authors: Connolly SA,Rosen AE,Musier-Forsyth K,Francklyn CS

    更新日期:2004-02-03 00:00:00

  • Specific photoaffinity labeling of Tyr-49 on the light chain in the steroid-combining site of a mouse monoclonal anti-estradiol antibody using two epimeric 6alpha- and 6beta-(5-azido-2-nitrobenzoyl)amidoestradiol photoreagents.

    abstract::A mouse monoclonal anti-7-(O-carboxymethyl)oximinoestradiol antibody was photoaffinity labeled with two cross-reactive 6alpha- and 6beta-(5-azido-2-nitrobenzoyl)amido[17alpha-3H]estradiol photoreagents (6alpha- and 6beta-ANBA-[17alpha-3H]estradiol). Covalently bound radioactivity was found exclusively on the light cha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962645a

    authors: Rousselot P,Mappus E,Blachère T,de Ravel MR,Grenot C,Tonnelle C,Cuilleron CY

    更新日期:1997-06-24 00:00:00

  • Pseudohyperphosphorylation causing AD-like changes in tau has significant effects on its polymerization.

    abstract::The microtubule-associated protein tau, in a hyperphosphorylated form, aggregates into insoluble paired-helical filaments (PHFs) in Alzheimer's disease (AD) and other tauopathies. In AD, there is approximately 8 mol of phosphate per mole of tau distributed among approximately 30 PHF phosphorylation sites as compared t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900602h

    authors: Sun Q,Gamblin TC

    更新日期:2009-06-30 00:00:00

  • Ligand-induced variations in the reactivity of thio groups of the alpha-subunit of the acetylcholine receptor from Torpedo californica.

    abstract::We have studied alkylation of the acetylcholine receptor by N-[3H]ethylmaleimide ([3H]NEM) under various conditions. The radiolabeled preparations were submitted to sodium dodecyl sulfate-polyacrylamide gel electrophoresis to separate the receptor complex into subunits, and the incorporation of 3H into each type of ch...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00306a001

    authors: de Souza Otero A,Hamilton SL

    更新日期:1984-05-22 00:00:00

  • NH2-terminal extensions on skin collagen from sheep with a genetic defect in conversion of procollagen into collagen.

    abstract::A modified form of procollagen was extracted with 10 M urea from the skin of lambs with dermatosparaxis, a disease which is produced by a genetic defect in the conversion of procollagen to collagen. The extracts contained little if any alpha1 and alpha2 chains of normal type I collagen, and instead they contained the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00658a024

    authors: Becker U,Timpl R

    更新日期:1976-06-29 00:00:00

  • Kinetic mechanism of Escherichia coli asparagine synthetase B.

    abstract::Escherichia coli asparagine synthetase B (AS-B) catalyzes the synthesis of asparagine from aspartate, glutamine, and ATP. A combination of kinetic, isotopic-labeling, and stoichiometry studies have been performed to define the nature of nitrogen transfer mediated by AS-B. The results of initial rate studies were consi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981058h

    authors: Boehlein SK,Stewart JD,Walworth ES,Thirumoorthy R,Richards NG,Schuster SM

    更新日期:1998-09-22 00:00:00

  • Operative Binding of Class I Release Factors and YaeJ Stabilizes the Ribosome in the Nonrotated State.

    abstract::During translation, the small subunit of the ribosome rotates with respect to the large subunit primarily between two states as mRNA is being translated into a protein. At the termination of bacterial translation, class I release factors (RFs) bind to a stop codon in the A-site and catalyze the release of the peptide ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00824

    authors: Casy W,Prater AR,Cornish PV

    更新日期:2018-04-03 00:00:00

  • Modulation of mitochondrial complex I activity by reversible Ca2+ and NADH mediated superoxide anion dependent inhibition.

    abstract::Complex I, a key component of the mitochondrial respiratory chain, exhibits diminished activity as a result of cardiac ischemia/reperfusion. Cardiac ischemia/reperfusion is associated with increases in the levels of mitochondrial Ca(2+) and pro-oxidants. In the current in vitro study, we sought evidence for a mechanis...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049803f

    authors: Sadek HA,Szweda PA,Szweda LI

    更新日期:2004-07-06 00:00:00

  • Kinetics of binding of oligosaccharides to a homogeneous pneumococcal antibody: dependence on antigen chain length suggests a labile intermediate complex.

    abstract::Temperature-jump experiments were performed with di-, tetra-, and hexasaccharides derived from type III pneumococcal polysaccharide using a homogeneous corresponding antibody IgG 45-394. A decrease in stability of the oligosaccharide-antibody complexes with decreasing chain length was observed and entirely reflected i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00637a023

    authors: Maeda H,Schmidt-Kessen A,Engel J,Jaton JC

    更新日期:1977-09-06 00:00:00

  • X-ray crystal structure of Desulfovibrio vulgaris rubrerythrin with zinc substituted into the [Fe(SCys)4] site and alternative diiron site structures.

    abstract::The X-ray crystal structure of recombinant Desulfovibrio vulgaris rubrerythrin (Rbr) that was subjected to metal constitution first with zinc and then iron, yielding ZnS(4)Rbr, is reported. A [Zn(SCys)(4)] site with no iron and a diiron site with no appreciable zinc in ZnS(4)Rbr were confirmed by analysis of the anoma...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0356193

    authors: Jin S,Kurtz DM Jr,Liu ZJ,Rose J,Wang BC

    更新日期:2004-03-23 00:00:00

  • Structure-Guided Analyses of a Key Enzyme Involved in the Biosynthesis of an Antivitamin.

    abstract::RosB catalyzes the formation of 8-aminoriboflavin 5'-phosphate (AFP), the key intermediate in roseoflavin biosynthesis, from the metabolic precursors riboflavin 5'-phosphate (RP, also known as FMN) and glutamate. The conversion of the aromatic methyl group at position 8 in RP into the aromatic amine in AFP occurs via ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00576

    authors: Kapoor I,Nair SK

    更新日期:2018-09-11 00:00:00

  • Self-association of rabbit muscle phosphofructokinase at pH 7.0: stoichiometry.

    abstract::The self-association of rabbit muscle phosphofructokinase at pH 7.0 was investigated by velocity sedimentation. The process was demonstrated to be in a rapid, dynamic equilibrium. The concentration dependence of the weight-average sedimentation coefficient was monitored within the range of 10-750 microgram/mL. The sed...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00513a040

    authors: Hesterberg LK,Lee JC

    更新日期:1981-05-12 00:00:00

  • Satellite DNAs contain sequences that induced curvature.

    abstract::The repeating units of mouse, rat, and alpha-monkey satellites have been cloned. All three show properties that are characteristic of curved DNA: (i) their migration in polyacrylamide gels is slower than predicted from their sequences, and (ii) they appear as curved molecules when visualized by electron microscopy. Al...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00461a019

    authors: Martínez-Balbás A,Rodríguez-Campos A,García-Ramírez M,Sainz J,Carrera P,Aymamí J,Azorín F

    更新日期:1990-03-06 00:00:00

  • Regulation of PutA-membrane associations by flavin adenine dinucleotide reduction.

    abstract::Proline utilization A (PutA) from Escherichia coli is a multifunctional flavoprotein that is both a transcriptional repressor of the proline utilization (put) genes and a membrane-associated enzyme which catalyzes the 4-electron oxidation of proline to glutamate. Previously, proline was shown to induce PutA-membrane b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048596g

    authors: Zhang W,Zhou Y,Becker DF

    更新日期:2004-10-19 00:00:00

  • Synthesis and properties of azidonitrophenyl pyrophosphate, a photoaffinity probe of the nucleotide binding sites of mitochondrial F1-ATPase.

    abstract::4-Azido-2-nitrophenyl pyrophosphate (azido-PPi) labeled with 32P in the alpha position was prepared and used to photolabel beef heart mitochondrial F1. Azido-PPi was hydrolyzed by yeast inorganic pyrophosphatase, but not by mitochondrial F1-ATPase. Incubation of F1 with [alpha-32P]azido-PPi in the dark under condition...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00452a021

    authors: Michel L,Garin J,Issartel JP,Vignais PV

    更新日期:1989-12-26 00:00:00

  • Comparison of the energetics of the uncatalyzed and glutamate dehydrogenase catalyzed alpha-imino acid-alpha-amino acid interconversion.

    abstract::The thermodynamic and activation parameters for the reduction of delta 1-pyrroline-2-carboxylic acid (an alpha-imino acid) by reduced nicotinamide adenine dinucleotide phosphate (NADPH) are compared with those for the reduction of the same imino acid by the glutamate dehydrogenase-NADPH complex. The enthalpies of acti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00341a013

    authors: Srinivasan R,Fisher HF

    更新日期:1985-09-24 00:00:00

  • Photoinduced reactivity of the HIV-1 envelope glycoprotein with a membrane-embedded probe reveals insertion of portions of the HIV-1 Gp41 cytoplasmic tail into the viral membrane.

    abstract::The interactions of HIV-1 Env (gp120-gp41) with CD4 and coreceptors trigger a barrage of conformational changes in Env that drive the membrane fusion process. Various regions of gp41 have profound effects on HIV entry and budding. However, the precise interactions between gp41 and the membrane have not been elucidated...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701920f

    authors: Viard M,Ablan SD,Zhou M,Veenstra TD,Freed EO,Raviv Y,Blumenthal R

    更新日期:2008-02-19 00:00:00

  • Effect of protein hydration on receptor conformation: decreased levels of bound water promote metarhodopsin II formation.

    abstract::Neutral solutes were used to investigate the effects of osmotic stress both on the ability of rhodopsin to undergo its activating conformation change and on acyl chain packing in the rod outer segment (ROS) disk membrane. The equilibrium concentration of metarhodopsin II (MII), the conformation of photoactivated rhodo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990634m

    authors: Mitchell DC,Litman BJ

    更新日期:1999-06-15 00:00:00