Organellar Na+/H+ exchangers: novel players in organelle pH regulation and their emerging functions.

Abstract:

:Mammalian Na+/H+ exchangers (NHEs) play a fundamental role in cellular ion homeostasis. NHEs exhibit an appreciable variation in expression, regulation, and physiological function, dictated by their dynamics in subcellular localization and/or interaction with regulatory proteins. In recent years, a subgroup of NHEs consisting of four isoforms has been identified, and its members predominantly localize to the membranes of the Golgi apparatus and endosomes. These organellar NHEs constitute a family of transporters with an emerging function in the regulation of luminal pH and in intracellular membrane trafficking as expressed, for example, in cell polarity development. Moreover, specific roles of a variety of cofactors, regulating the intracellular dynamics of these transporters, are also becoming apparent, thereby providing further insight into their mechanism of action and overall functioning. Interestingly, organellar NHEs have been related to mental disorders, implying a potential role in the brain, thus expanding the physiological significance of these transporters.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Ohgaki R,van IJzendoorn SC,Matsushita M,Hoekstra D,Kanazawa H

doi

10.1021/bi101082e

subject

Has Abstract

pub_date

2011-02-01 00:00:00

pages

443-50

issue

4

eissn

0006-2960

issn

1520-4995

journal_volume

50

pub_type

杂志文章,评审
  • Production and characterization of bifunctional enzymes. Substrate channeling in the aspartate pathway.

    abstract::The direct channeling of an intermediate between enzymes that catalyze consecutive reactions in a pathway offers the possibility of an efficient, exclusive, and protected means of metabolite delivery. Aspartokinase-homoserine dehydrogenase I (AK-HDH I) from Escherichia coli is an unusual bifunctional enzyme in that it...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0159074

    authors: James CL,Viola RE

    更新日期:2002-03-19 00:00:00

  • Entropy effects on protein hinges: the reaction catalyzed by triosephosphate isomerase.

    abstract::Many proteins utilize segmental motions to catalyze a specific reaction. The Omega loop of triosephosphate isomerase (TIM) is important for preventing the loss of the reactive enediol(ate) intermediate. The loop opens and closes even in the absence of the ligand, and the loop itself does not change conformation during...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049208d

    authors: Xiang J,Jung JY,Sampson NS

    更新日期:2004-09-14 00:00:00

  • Kinetic evidence for folding and unfolding intermediates in staphylococcal nuclease.

    abstract::The complex kinetic behavior commonly observed in protein folding studies suggests that a heterogeneous population of molecules exists in solution and that a number of discrete steps are involved in the conversion of unfolded molecules to the fully native form. A central issue in protein folding is whether any of thes...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9700476

    authors: Walkenhorst WF,Green SM,Roder H

    更新日期:1997-05-13 00:00:00

  • Structural elucidation of a hydrophobic box in bovine alpha-lactalbumin by NMR: nuclear Overhauser effects.

    abstract::The proton nuclear Overhauser effects of bovine alpha-lactalbumin were studied at 200 MHz by irradiation of an upfield ring current shifted methylene at -2.45 ppm (assigned to Ile-95) and two aromatic protons, Tyr-103 (8.36 ppm) and Trp-60 (5.85 ppm). The experimental results were consistent with a putative three-dime...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00346a035

    authors: Koga K,Berliner LJ

    更新日期:1985-12-03 00:00:00

  • NMR determination of pKa values for Asp, Glu, His, and Lys mutants at each variable contiguous enzyme-inhibitor contact position of the turkey ovomucoid third domain.

    abstract::From the larger set of 191 variants at all the variable contact positions in the turkey ovomucoid third domain, we selected a subset that consists of Asp, Glu, His, and Lys residues at eight of the nine contiguous P6-P3' positions (residues 13-21), the exception being P3-Cys16 which is involved in a conserved disulfid...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0269512

    authors: Song J,Laskowski M Jr,Qasim MA,Markley JL

    更新日期:2003-03-18 00:00:00

  • Peptidylglycine alpha-hydroxylating monooxygenase: active site residues, disulfide linkages, and a two-domain model of the catalytic core.

    abstract::Peptidylglycine alpha-hydroxylating monooxygenase (PHM) is a copper, ascorbate, and molecular oxygen dependent enzyme that catalyzes the first step leading to the C-terminal amidation of glycine-extended peptides. The catalytic core of PHM (PHMcc), refined to residues 42-356 of the PHM protein, was expressed at high l...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9708747

    authors: Kolhekar AS,Keutmann HT,Mains RE,Quon AS,Eipper BA

    更新日期:1997-09-09 00:00:00

  • C5 cytosine methylation at CpG sites enhances sequence selectivity of mitomycin C-DNA bonding.

    abstract::We have established that UvrABC nuclease is equally efficient in cutting mitomycin C (MC)-DNA monoadducts formed at different sequences and that the degree of UvrABC cutting represents the extent of drug-DNA bonding. Using this method we determined the effect of C5 cytosine methylation on the DNA monoalkylation by MC ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991307h

    authors: Li VS,Reed M,Zheng Y,Kohn H,Tang M

    更新日期:2000-03-14 00:00:00

  • Regulatory mechanisms of tumor suppressor P16(INK4A) and their relevance to cancer.

    abstract::P16(INK4A) (also known as P16 and MTS1), a protein consisting exclusively of four ankyrin repeats, is recognized as a tumor suppressor mainly because of the prevalence of genetic inactivation of the p16(INK4A) (or CDKN2A) gene in virtually all types of human cancers. However, it has also been shown that an elevated le...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi200642e

    authors: Li J,Poi MJ,Tsai MD

    更新日期:2011-06-28 00:00:00

  • Analyzing topography of membrane-inserted diphtheria toxin T domain using BODIPY-streptavidin: at low pH, helices 8 and 9 form a transmembrane hairpin but helices 5-7 form stable nonclassical inserted segments on the cis side of the bilayer.

    abstract::Low pH-induced membrane insertion by diphtheria toxin T domain is crucial for A chain translocation into the cytoplasm. To define the membrane topography of the T domain, the exposure of biotinylated Cys residues to the cis and trans bilayer surfaces was examined using model membrane vesicles containing a deeply inser...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049354j

    authors: Rosconi MP,Zhao G,London E

    更新日期:2004-07-20 00:00:00

  • 1H nuclear magnetic resonance double resonance study of oxytocin in aqueous solution.

    abstract::Peptide NH resonances in the 250 MHZ 1H nuclear magnetic resonance (NMR) spectrum of oxytocin in H2O were assigned to specific amino acid residues by the "underwater decoupling" technique (i.e., decoupling from corresponding CalphaH resonances, which are buried beneath the intense water peak). These experiments confir...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00650a025

    authors: Glickson JD,Rowan R,Pitner TP,Dadok J,Bothner-By AA,Walter R

    更新日期:1976-03-09 00:00:00

  • Formation of the full SNARE complex eliminates interactions of its individual protein components with the Kv2.1 channel.

    abstract::Previously, we have demonstrated physical and functional interactions of the voltage-gated potassium channel Kv2.1 with the plasma membrane protein components of the exocytotic SNARE complex, syntaxin 1A, and the t-SNARE, syntaxin 1A/SNAP-25, complex. Importantly, the physical interaction of Kv2.1 with syntaxin was sh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800512p

    authors: Tsuk S,Lvov A,Michaelevski I,Chikvashvili D,Lotan I

    更新日期:2008-08-12 00:00:00

  • The arginine finger loop of yeast and human GAP is a determinant for the specificity toward Ras GTPase.

    abstract::In this work, we have studied the role of the arginine finger region in determining the specificity of the GTPase activating proteins (GAPs) Saccharomyces cerevisiae Ira2p and human p120-GAP toward yeast Ras2p and human Ha-Ras p21. It is known that p120-GAP can enhance both Ras2p and Ha-Ras GTPase activities, whereas ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010027a

    authors: te Biesebeke R,Krab IM,Parmeggiani A

    更新日期:2001-06-26 00:00:00

  • Characterization of interactions between a two-component response regulator, Spo0F, and its phosphatase, RapB.

    abstract::The phosphorelay signal transduction pathway controls sporulation initiation in Bacillus subtilis. Transfer of a phosphoryl group from multiple kinases (KinA and KinB) through a single domain response regulator homologue (Spo0F), a phosphotransferase (Spo0B), and ultimately to a transcriptional regulator, (Spo0A) acti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981340o

    authors: Tzeng YL,Feher VA,Cavanagh J,Perego M,Hoch JA

    更新日期:1998-11-24 00:00:00

  • Binding of T4 endonuclease V to deoxyribonucleic acid irradiated with ultraviolet light.

    abstract::Endonuclease V of bacteriophage T4 binds to UV-irradiated deoxyribonucleic acid (DNA) but not to unirradiated DNA. We have developed an assay to detect this binding, based on the retention of enzyme--DNA complexes on nitrocellulose filters. The amount of complex retained, ascertained by using radioactive DNA, is a mea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00549a026

    authors: Seawell PC,Simon TJ,Ganesan AK

    更新日期:1980-04-15 00:00:00

  • Human and murine cytotoxic T lymphocyte serine proteases: subsite mapping with peptide thioester substrates and inhibition of enzyme activity and cytolysis by isocoumarins.

    abstract::The active site structures of human Q31 granzyme A, murine granzymes (A, B, C, D, E, and F), and human granzymes (A, B, and 3) isolated from cytotoxic T lymphocytes (CTL) were studied with peptide thioester substrates, peptide chloromethyl ketone, and isocoumarin inhibitors. Human Q31, murine, and human granzyme A hyd...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00222a027

    authors: Odake S,Kam CM,Narasimhan L,Poe M,Blake JT,Krahenbuhl O,Tschopp J,Powers JC

    更新日期:1991-02-26 00:00:00

  • Conformational change and ligand binding in the aristolochene synthase catalytic cycle.

    abstract::Terpene synthases are potentially useful biocatalysts for the synthesis of valuable compounds, such as anticancer drugs and antibiotics. The design of altered activities requires better knowledge of their mechanisms, for example, an understanding of the complex conformational changes that are part of their catalytic c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400898k

    authors: van der Kamp MW,Sirirak J,Żurek J,Allemann RK,Mulholland AJ

    更新日期:2013-11-12 00:00:00

  • Distal regulation of heme binding of heme oxygenase-1 mediated by conformational fluctuations.

    abstract::Heme oxygenase-1 (HO-1) is an enzyme that catalyzes the oxidative degradation of heme. Since free heme is toxic to cells, rapid degradation of heme is important for maintaining cellular health. There have been useful mechanistic studies of the HO reaction based on crystal structures; however, how HO-1 recognizes heme ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi5009694

    authors: Harada E,Sugishima M,Harada J,Fukuyama K,Sugase K

    更新日期:2015-01-20 00:00:00

  • Identification of Asp-130 as the catalytic nucleophile in the main alpha-galactosidase from Phanerochaete chrysosporium, a family 27 glycosyl hydrolase.

    abstract::Characterization of the complete gene sequence encoding the alpha-galactosidase from Phanerochaete chrysosporium confirms that this enzyme is a member of glycosyl hydrolase family 27 [Henrissat, B., and Bairoch, A. (1996) Biochem. J. 316, 695-696]. This family, together with the family 36 alpha-galactosidases, forms g...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0008074

    authors: Hart DO,He S,Chany CJ 2nd,Withers SG,Sims PF,Sinnott ML,Brumer H 3rd

    更新日期:2000-08-15 00:00:00

  • Effects of Olive Metabolites on DNA Cleavage Mediated by Human Type II Topoisomerases.

    abstract::Several naturally occurring dietary polyphenols with chemopreventive or anticancer properties are topoisomerase II poisons. To identify additional phytochemicals that enhance topoisomerase II-mediated DNA cleavage, a library of 341 Mediterranean plant extracts was screened for activity against human topoisomerase IIα....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00162

    authors: Vann KR,Sedgeman CA,Gopas J,Golan-Goldhirsh A,Osheroff N

    更新日期:2015-07-28 00:00:00

  • Observation of multiple myosin subfragment 1-ADP-fluoroberyllate complexes by 19F NMR spectroscopy.

    abstract::Fluoroaluminate and fluoroberyllate are potent inhibitors of the ATPase activity of myosin. Inhibition requires the presence of ADP, and much evidence has accumulated to suggest that the tetrahedral fluoroaluminate and fluoroberyllate ions act as phosphate analogues, binding with high affinity at the active site in th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00090a022

    authors: Henry GD,Maruta S,Ikebe M,Sykes BD

    更新日期:1993-10-05 00:00:00

  • Abortive initiation and long ribonucleic acid synthesis.

    abstract::In vitro transcription assays have been used to study the rate of ribonucleic acid (RNA) synthesis from the Escherichia coli lactose promotor mutant lacL8UV5 contained on a 203-bp (base pair) restriction fragment. The half-life of long (63-base) RNA production from heparin-resistant RNA polymerase-promotor complexes w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00511a003

    authors: Munson LM,Reznikoff WS

    更新日期:1981-04-14 00:00:00

  • Evidence for a singlet intermediate in catalysis by Escherichia coli DNA photolyase and evaluation of substrate binding determinants.

    abstract::Escherichia coli DNA photolyase contains 1,5-dihydro-FAD (FADH2) plus 5,10-methenyl-tetrahydrofolate (5,10-CH+-H4folate). Both chromophores are fluorescent, and either can function as a sensitizer in catalysis. At 77 K separate fluorescence emission bands are observed for FADH2 (lambda max = 505 nm, shoulder at 540 nm...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00425a007

    authors: Jordan SP,Jorns MS

    更新日期:1988-12-13 00:00:00

  • Crystal structures of two self-hydroxylating ribonucleotide reductase protein R2 mutants: structural basis for the oxygen-insertion step of hydroxylation reactions catalyzed by diiron proteins.

    abstract::The R2 protein of ribonucleotide reductase catalyzes the dioxygen-dependent one-electron oxidation of Tyr122 at a diiron-carboxylate site. Methane monooxygenase and related hydroxylases catalyze hydrocarbon hydroxylation at diiron sites structurally related to the one in R2. In protein R2, the likely reaction site for...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9806403

    authors: Logan DT,deMaré F,Persson BO,Slaby A,Sjöberg BM,Nordlund P

    更新日期:1998-07-28 00:00:00

  • A C-truncated glutamyl-tRNA synthetase specific for tRNA(Glu) is stimulated by its free complementary distal domain: mechanistic and evolutionary implications.

    abstract::Faithful translation of the genetic code is mainly based on the specificity of tRNA aminoacylation catalyzed by aminoacyl-tRNA synthetases. These enzymes are comprised of a catalytic core and several appended domains. Bacterial glutamyl-tRNA synthetases (GluRS) contain five structural domains, the two distal ones inte...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801690f

    authors: Dubois DY,Blais SP,Huot JL,Lapointe J

    更新日期:2009-06-30 00:00:00

  • Directed hydroxyl radical probing of 16S ribosomal RNA in 70S ribosomes from internal positions of the RNA.

    abstract::Directed hydroxyl radical probing of 16S ribosomal RNA from Fe(II) tethered to specific sites within the RNA was used to determine RNA-RNA proximities in 70S ribosomes. We have transcribed 16S ribosomal RNA in vitro as two separate fragments, covalently attached an Fe(II) probe to a 5'-guanosine-alpha-phosphorothioate...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981644a

    authors: Newcomb LF,Noller HF

    更新日期:1999-01-19 00:00:00

  • Extracellular Juxtamembrane Segment of ADAM17 Interacts with Membranes and Is Essential for Its Shedding Activity.

    abstract::A wide variety of biological processes including differentiation, regeneration, and cancer progression are regulated by shedding of membrane-anchored proteins. One of the major sheddases is A Disintegrin And Metalloprotease-17 (ADAM17) whose extracellular region consists of a pro-, a catalytic, a disintegrin-, and a m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00497

    authors: Düsterhöft S,Michalek M,Kordowski F,Oldefest M,Sommer A,Röseler J,Reiss K,Grötzinger J,Lorenzen I

    更新日期:2015-09-29 00:00:00

  • Detergent solubilization of the endocytic Ca(2+)-independent hyaluronan receptor from rat liver endothelial cells and separation from a Ca(2+)-dependent hyaluronan-binding activity.

    abstract::Rat liver sinusoidal endothelial cells (LECs) mediate the removal of hyaluronan (HA) from the circulation via a specific Ca(2+)-independent endocytic receptor. To characterize the receptor biochemically, detergent-soluble extracts were prepared from crude LEC membranes. Using a dot blot assay to quantitate 125I-HA bin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00117a039

    authors: Yannariello-Brown J,Weigel PH

    更新日期:1992-01-21 00:00:00

  • Affinity selection of chemically modified proteins: role of lysyl residues in the binding of calmodulin to calcineurin.

    abstract::In affinity selection, calcineurin selects from a population of randomly modified calmodulins those species with which it prefers to interact. The method shows that acetylation of lysines affects calmodulin so as to interfere with its ability to interact with calcineurin. Monoacetylation of any lysine of calmodulin re...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00379a026

    authors: Manalan AS,Klee CB

    更新日期:1987-03-10 00:00:00

  • Bovine enterokinase. Purification, specificity, and some molecular properties.

    abstract::Enterokinase has been isolated from the contents of bovine duodena and purified 1200-fold in 41% yield. The isolation procedure employed DEAE chromatography, affinity chromatography on immobilized p-aminobenzamidine, and gel filtration. The resultant pure enzyme exhibits a single band on sodium dodecyl sulfate gel ele...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00634a011

    authors: Anderson LE,Walsh KA,Neurath H

    更新日期:1977-07-26 00:00:00

  • Ff gene 5 single-stranded DNA-binding protein assembles on nucleotides constrained by a DNA hairpin.

    abstract::The gene 5 protein (g5p) encoded by filamentous Ff phages is an ssDNA-binding protein, which binds to and sequesters the nascent ssDNA phage genome in the process of phage morphogenesis. The g5p also binds with high affinity to DNA and RNA sequences that form G-quadruplex structures. However, sequences that would form...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi030177g

    authors: Wen JD,Gray DM

    更新日期:2004-03-09 00:00:00