Mutational analysis of Escherichia coli sigma28 and its target promoters reveals recognition of a composite -10 region, comprised of an 'extended -10' motif and a core -10 element.

Abstract:

:Sigma28 controls the expression of flagella-related genes and is the most widely distributed alternative sigma factor, present in motile Gram-positive and Gram-negative bacteria. The distinguishing feature of sigma28 promoters is a long -10 region (GCCGATAA). Despite the fact that the upstream GC is highly conserved, previous studies have not indicated a functional role for this motif. Here we examine the functional relevance of the GCCG motif and determine which residues in sigma28 participate in its recognition. We find that the GCCG motif is a functionally important composite element. The upstream GC constitutes an extended -10 motif and is recognized by R91, a residue in Domain 3 of sigma28. The downstream CG is the upstream edge of -10 region of the promoter; two residues in Region 2.4, D81 and R84, participate in its recognition. Consistent with their role in base-specific recognition of the promoter, R91, D81 and D84 are universally conserved in sigma28 orthologues. Sigma28 is the second Group 3 sigma shown to use an extended -10 region in promoter recognition, raising the possibility that other Group 3 sigmas will do so as well.

journal_name

Mol Microbiol

journal_title

Molecular microbiology

authors

Koo BM,Rhodius VA,Campbell EA,Gross CA

doi

10.1111/j.1365-2958.2009.06691.x

subject

Has Abstract

pub_date

2009-05-01 00:00:00

pages

830-43

issue

4

eissn

0950-382X

issn

1365-2958

pii

MMI6691

journal_volume

72

pub_type

杂志文章
  • HobA--a novel protein involved in initiation of chromosomal replication in Helicobacter pylori.

    abstract::Replication of the bacterial chromosome is initiated by the binding of the DnaA protein to a unique DNA region, called oriC. Many regulatory factors in numerous species act by controlling the ability of DnaA to bind and unwind DNA, but the Helicobacter pylori genome does not contain homologues to any of these factors....

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2007.05853.x

    authors: Zawilak-Pawlik A,Kois A,Stingl K,Boneca IG,Skrobuk P,Piotr J,Lurz R,Zakrzewska-Czerwińska J,Labigne A

    更新日期:2007-08-01 00:00:00

  • Reversible non-genetic phenotypic heterogeneity in bacterial quorum sensing.

    abstract::Bacteria co-ordinate their social behaviour in a density-dependent manner by production of diffusible signal molecules by a process known as quorum sensing (QS). It is generally assumed that in homogenous environments and at high cell density, QS synchronizes cells in the population to perform collective social tasks ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12575

    authors: Pradhan BB,Chatterjee S

    更新日期:2014-05-01 00:00:00

  • IpaB mediates macrophage apoptosis induced by Shigella flexneri.

    abstract::Shigella flexneri kills macrophages through apoptosis, involving the induction of host cell DNA fragmentation and characteristic morphological changes. Shigella can only cause damage if it escapes from the phagolysosome into the cytoplasm. The S. flexneri cytotoxic genes have been localized to the ipa operon of shigel...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1994.tb00341.x

    authors: Zychlinsky A,Kenny B,Ménard R,Prévost MC,Holland IB,Sansonetti PJ

    更新日期:1994-02-01 00:00:00

  • Expanded linkage map of Erwinia chrysanthemi strain 3937.

    abstract::In this paper we describe the chromosomal location of various loci in Erwinia chrysanthemi strain 3937. Auxotrophic markers were obtained by chemical mutagenesis, antibiotic resistances were isolated spontaneously and mutations in sugar utilization were obtained by means of Mu insertions. These markers were located on...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1989.tb00204.x

    authors: Hugouvieux-Cotte-Pattat N,Reverchon S,Robert-Baudouy J

    更新日期:1989-05-01 00:00:00

  • Transcriptional regulation of bioluminesence genes from Vibrio fischeri.

    abstract::The phenomenon of cell-density-dependent control of gene expression, called autoinduction, has long been a subject of interest and investigation in bioluminescent marine bacteria. It is now becoming clear that many other bacteria, including animal and plant pathogens, use an autoinduction mechanism to regulate a varie...

    journal_title:Molecular microbiology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1365-2958.1995.mmi_17050801.x

    authors: Sitnikov DM,Schineller JB,Baldwin TO

    更新日期:1995-09-01 00:00:00

  • Functional analysis of the Helicobacter pylori principal sigma subunit of RNA polymerase reveals that the spacer region is important for efficient transcription.

    abstract::We have cloned the rpoD gene encoding the principal sigma (sigma) factor of Helicobacter pylori. The deduced amino acid sequence reveals a predicted polypeptide of 676 residues that has amino acid homology with the principal sigma factors of a number of divergent prokaryotes. We have designated this factor sigma80. Am...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1998.01043.x

    authors: Beier D,Spohn G,Rappuoli R,Scarlato V

    更新日期:1998-10-01 00:00:00

  • Replication mutants of Staphylococcus aureus macrolide-lincosamide-streptogramin B resistance plasmid pT48.

    abstract::Copy-number mutants of Staphylococcus aureus macrolide-lincosamide-streptogramin B (MLS) resistance plasmid pT48 were isolated by their resistance to the non-inducing macrolide, tylosin. One mutant plasmid, pcopD3, showed a three- to five-fold cis-dominant increase in copy number, and nucleotide sequence analysis reve...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1991.tb00771.x

    authors: Catchpole I,Dyke KG

    更新日期:1991-04-01 00:00:00

  • Identification and characterization of a Streptococcus pyogenes ABC transporter with multiple specificity for metal cations.

    abstract::Metal ions are crucial trace elements for bacteria infecting the human host. The LraI (lipoprotein receptor-associated antigen I) transporter in Streptococcus spp. belongs to the superfamily of ABC transporters. The transporter consists of a lipoprotein, an ATP-binding protein and a hydrophobic integral membrane prote...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1999.01626.x

    authors: Janulczyk R,Pallon J,Björck L

    更新日期:1999-11-01 00:00:00

  • Crl stimulates RpoS activity during stationary phase.

    abstract::RpoS, an alternative primary sigma factor, has been shown to be regulated at multiple levels, including transcription, translation and protein stability. Here, we present evidence that suggests that RpoS is regulated at yet another level by the product of the crl gene. The crl gene was first thought to encode the majo...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1998.01007.x

    authors: Pratt LA,Silhavy TJ

    更新日期:1998-09-01 00:00:00

  • To ∼P or Not to ∼P? Non-canonical activation by two-component response regulators.

    abstract::Bacteria sense and respond to their environment through the use of two-component regulatory systems. The ability to adapt to a wide range of environmental stresses is directly related to the number of two-component systems an organism possesses. Recent advances in this area have identified numerous variations on the a...

    journal_title:Molecular microbiology

    pub_type: 杂志文章,评审

    doi:10.1111/mmi.13532

    authors: Desai SK,Kenney LJ

    更新日期:2017-01-01 00:00:00

  • Impact of the unfolded protein response on the pathogenicity of the necrotrophic fungus Alternaria brassicicola.

    abstract::The unfolded protein response (UPR) is an important stress signalling pathway involved in the cellular development and environmental adaptation of fungi. We investigated the importance of the UPR pathway in the pathogenicity of the plant necrotrophic fungus Alternaria brassicicola, which causes black spot disease on a...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2010.07522.x

    authors: Joubert A,Simoneau P,Campion C,Bataillé-Simoneau N,Iacomi-Vasilescu B,Poupard P,François JM,Georgeault S,Sellier E,Guillemette T

    更新日期:2011-03-01 00:00:00

  • Candida glabrata environmental stress response involves Saccharomyces cerevisiae Msn2/4 orthologous transcription factors.

    abstract::We determined the genome-wide environmental stress response (ESR) expression profile of Candida glabrata, a human pathogen related to Saccharomyces cerevisiae. Despite different habitats, C. glabrata, S. cerevisiae, Schizosaccharomyces pombe and Candida albicans have a qualitatively similar ESR. We investigate the fun...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2008.06301.x

    authors: Roetzer A,Gregori C,Jennings AM,Quintin J,Ferrandon D,Butler G,Kuchler K,Ammerer G,Schüller C

    更新日期:2008-08-01 00:00:00

  • Intramolecular transposition of insertion sequence IS91 results in second-site simple insertions.

    abstract::A series of plasmids carrying an IRL-kan-IRR transposable cassette, in which IRL and IRR are the left- and right-terminal sequences of IS91, have been constructed. These cassettes could be complemented for transposition with similar efficiency when IS91 transposase was provided either in cis or in trans. A total of 87...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1999.01432.x

    authors: Bernales I,Mendiola MV,de la Cruz F

    更新日期:1999-07-01 00:00:00

  • Regulated proteolysis of a transcription factor complex is critical to cell cycle progression in Caulobacter crescentus.

    abstract::Cell cycle transitions are often triggered by the proteolysis of key regulatory proteins. In Caulobacter crescentus, the G1-S transition involves the degradation of an essential DNA-binding response regulator, CtrA, by the ClpXP protease. Here, we show that another critical cell cycle regulator, SciP, is also degraded...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12166

    authors: Gora KG,Cantin A,Wohlever M,Joshi KK,Perchuk BS,Chien P,Laub MT

    更新日期:2013-03-01 00:00:00

  • Repair of cyclobutane pyrimidine dimers and 6-4 photoproducts in the fission yeast Schizosaccharomyces pombe.

    abstract::We have measured repair of both of the major lesions induced by ultraviolet irradiation (cyclobutane pyrimidine dimers and 6-4 photoproducts) in wild-type Schizosaccharomyces pombe and in selected rad mutants, including mutants with deletions in genes from the main phenotypic groups. We find that rad13 delta, rad15 an...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1993.tb00959.x

    authors: McCready S,Carr AM,Lehmann AR

    更新日期:1993-11-01 00:00:00

  • The DNA site utilized by bacteriophage P22 for initiation of DNA packaging.

    abstract::Virion proteins recognize their cognate nucleic acid for encapsidation into virions through recognition of a specific nucleotide sequence contained within that nucleic acid. Viruses like bacteriophage P22, which have partially circularly permuted, double-stranded virion DNAs, encapsidate DNA through processive series ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2002.03114.x

    authors: Wu H,Sampson L,Parr R,Casjens S

    更新日期:2002-09-01 00:00:00

  • Mutational and physical analysis of F plasmid traY protein binding to oriT.

    abstract::F plasmid traY protein binding to wild-type or deleted regions containing the TraY-binding site, sbyA, was studied in vitro. The principal DNA-protein complex was formed with DNA segments including the sbyA site defined by footprinting and (with lesser affinity) with truncated segments that retained the leftward two-t...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1994.tb00327.x

    authors: Luo Y,Gao Q,Deonier RC

    更新日期:1994-02-01 00:00:00

  • Repression of tonB transcription during anaerobic growth requires Fur binding at the promoter and a second factor binding upstream.

    abstract::Although iron is an essential nutrient, its toxicity at high levels necessitates regulated transport. In Gram-negative bacteria a central target for regulation is the TonB protein, an energy transducer that couples the cytoplasmic membrane proton motive force to active transport of (FeIII)-siderophore complexes across...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1994.tb00373.x

    authors: Young GM,Postle K

    更新日期:1994-03-01 00:00:00

  • Liver-specific protein 2: a Plasmodium protein exported to the hepatocyte cytoplasm and required for merozoite formation.

    abstract::The liver stage is the first stage of the malaria parasite that replicates in the vertebrate host. However, little is known about the interplay between the parasite liver stage and its host cell, the hepatocyte. In this study, we identified an exported protein that has a critical role in parasite development in host h...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12083

    authors: Orito Y,Ishino T,Iwanaga S,Kaneko I,Kato T,Menard R,Chinzei Y,Yuda M

    更新日期:2013-01-01 00:00:00

  • Multiple drug resistance genes in malaria -- from epistasis to epidemiology.

    abstract::A decline in our ability to successfully treat patients with malaria infections of the parasitic protozoan Plasmodium falciparum with cheap quinoline drugs has led to a huge escalation in morbidity and mortality in recent years. Many approaches have been taken, including classical genetics, reverse genetics and molecu...

    journal_title:Molecular microbiology

    pub_type: 评论,杂志文章,评审

    doi:10.1111/j.1365-2958.2005.04748.x

    authors: Duraisingh MT,Refour P

    更新日期:2005-08-01 00:00:00

  • The function of CreA, the carbon catabolite repressor of Aspergillus nidulans, is regulated at the transcriptional and post-transcriptional level.

    abstract::The creA gene of A. nidulans encodes a wide-domain regulatory protein mediating carbon catabolite repression. Northern blot analysis of creA mRNA revealed a complex expression profile: the addition of monosaccharides to a carbon-starved culture of A. nidulans provoked a strong transient stimulation of creA transcript ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1999.01341.x

    authors: Strauss J,Horvath HK,Abdallah BM,Kindermann J,Mach RL,Kubicek CP

    更新日期:1999-04-01 00:00:00

  • EthR, a repressor of the TetR/CamR family implicated in ethionamide resistance in mycobacteria, octamerizes cooperatively on its operator.

    abstract::Ethionamide (ETH) is an important second-line antitubercular drug used for the treatment of patients infected with multidrug-resistant Mycobacterium tuberculosis. Although ETH is a structural analogue of isoniazid, only little cross-resistance to these two drugs is observed among clinical isolates. Both isoniazid and ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2003.03809.x

    authors: Engohang-Ndong J,Baillat D,Aumercier M,Bellefontaine F,Besra GS,Locht C,Baulard AR

    更新日期:2004-01-01 00:00:00

  • Klebsiella pneumoniae strain K21: evidence for the rapid secretion of an unacylated form of pullulanase.

    abstract::Klebsiella pneumoniae strain PAP996 was previously shown to secrete fatty acylated, aggregated (micellar) pullulanase only after the end of exponential growth. Here we show that the closely related strain K21 secretes large amounts of unacylated, non-aggregated (monomeric) pullulanase during exponential growth. Only a...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1989.tb00196.x

    authors: Kornacker MG,Boyd A,Pugsley AP,Plastow GS

    更新日期:1989-04-01 00:00:00

  • cAMP and ras signalling independently control spore germination in the filamentous fungus Aspergillus nidulans.

    abstract::The role of cAMP signalling during germination of asexual spores (conidia) of the filamentous fungus Aspergillus nidulans was investigated. A. nidulans strains defective for adenylate cyclase (CyaA) or for the functionally overlapping cAMP-dependent protein kinase (PkaA) and newly characterized SchA protein kinase, ho...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2002.02933.x

    authors: Fillinger S,Chaveroche MK,Shimizu K,Keller N,d'Enfert C

    更新日期:2002-05-01 00:00:00

  • Pathways for the utilization of N-acetyl-galactosamine and galactosamine in Escherichia coli.

    abstract::Among enteric bacteria, the ability to grow on N-acetyl-galactosamine (GalNAc or Aga) and on D-galactosamine (GalN or Gam) differs. Thus, strains B, C and EC3132 of Escherichia coli are Aga+ Gam+ whereas E. coli K-12 is Aga- Gam-, similarly to Klebsiella pneumoniae KAY2026, Klebsiella oxytoca M5a1 and Salmonella typhi...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2000.01969.x

    authors: Brinkkötter A,Klöss H,Alpert C,Lengeler JW

    更新日期:2000-07-01 00:00:00

  • The two faces of Janus: virulence gene regulation by CovR/S in group A streptococci.

    abstract::The group A streptococcus (GAS) causes a variety of human diseases, including toxic shock syndrome and necrotizing fasciitis, which are both associated with significant mortality. Even the superficial self-limiting diseases caused by GAS, such as pharyngitis, impose a significant economic burden on society. GAS can ca...

    journal_title:Molecular microbiology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1365-2958.2007.05649.x

    authors: Churchward G

    更新日期:2007-04-01 00:00:00

  • Two operons that encode FNR-like proteins in Lactococcus lactis.

    abstract::Global regulatory circuits of the type mediated by CRP and FNR in Escherichia coli were sought in Lactococcus lactis to provide a basis for redirecting carbon metabolism to specific fermentation products. Using a polymerase chain reaction (PCR) approach, two genes (flpA and flpB) encoding FNR-like proteins (FlpA and F...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1999.01298.x

    authors: Gostick DO,Griffin HG,Shearman CA,Scott C,Green J,Gasson MJ,Guest JR

    更新日期:1999-03-01 00:00:00

  • Interaction of the RNA chaperone Hfq with mRNAs: direct and indirect roles of Hfq in iron metabolism of Escherichia coli.

    abstract::The Escherichia coli Sm-like host factor I (Hfq) is thought to play direct and indirect roles in post-transcriptional regulation by targeting small regulatory RNAs and mRNAs. In this study, we have used proteomics to identify new mRNA targets of Hfq. We have identified 11 candidate proteins, synthesis of which was dif...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2003.03727.x

    authors: Vecerek B,Moll I,Afonyushkin T,Kaberdin V,Bläsi U

    更新日期:2003-11-01 00:00:00

  • Cloning and expression of a murein hydrolase lipoprotein from Escherichia coli.

    abstract::On the basis of the published N-terminal amino acid sequence of the soluble lytic transglycosylase 35 (Slt35) of Escherichia coli, an open reading frame (ORF) was cloned from the 60.8 min region of the E. coli chromosome. The nucleotide sequence of the ORF, containing a putative lipoprotein-processing site, was shown ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1995.tb02437.x

    authors: Ehlert K,Höltje JV,Templin MF

    更新日期:1995-05-01 00:00:00

  • Microtubule-severing proteins are involved in flagellar length control and mitosis in Trypanosomatids.

    abstract::Microtubules are key players in the biology of Trypanosomatid parasites, not only as classical components of the mitotic spindle, microtubule-organizing centres and flagellum but also as the essential constituent of the cytoskeleton. Their length dynamics are regulated by, among others, microtubule-severing proteins. ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2009.06594.x

    authors: Casanova M,Crobu L,Blaineau C,Bourgeois N,Bastien P,Pagès M

    更新日期:2009-03-01 00:00:00