Gene-trait similarity regression for multimarker-based association analysis.

Abstract:

:We propose a similarity-based regression method to detect associations between traits and multimarker genotypes. The model regresses similarity in traits for pairs of "unrelated" individuals on their haplotype similarities, and detects the significance by a score test for which the limiting distribution is derived. The proposed method allows for covariates, uses phase-independent similarity measures to bypass the needs to impute phase information, and is applicable to traits of general types (e.g., quantitative and qualitative traits). We also show that the gene-trait similarity regression is closely connected with random effects haplotype analysis, although commonly they are considered as separate modeling tools. This connection unites the classic haplotype sharing methods with the variance-component approaches, which enables direct derivation of analytical properties of the sharing statistics even when the similarity regression model becomes analytically challenging.

journal_name

Biometrics

journal_title

Biometrics

authors

Tzeng JY,Zhang D,Chang SM,Thomas DC,Davidian M

doi

10.1111/j.1541-0420.2008.01176.x

subject

Has Abstract

pub_date

2009-09-01 00:00:00

pages

822-32

issue

3

eissn

0006-341X

issn

1541-0420

pii

BIOM1176

journal_volume

65

pub_type

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