A generalized estimating equations approach for spatially correlated binary data: applications to the analysis of neuroimaging data.

Abstract:

:This paper proposes a generalized estimating equations approach for the analysis of spatially correlated binary data when there are large numbers of spatially correlated observations on a moderate number of subjects. This approach is useful when the scientific focus is on modeling the marginal mean structure. Proper modeling of the spatial correlation structure is shown to provide large efficiency gains along with precise standard error estimates for inference on mean structure parameters. Generalized estimating equations for estimating the parameters of both the mean and spatial correlation structure are proposed. The use of semivariogram models for parameterizing the correlation structure is discussed, and estimation of the sample semivariogram is proposed as a technique for choosing parametric models and starting values for generalized estimating equations estimation. The methodology is illustrated with neuroimaging data collected as part of the National Institute of Neurological Disorders and Stroke (NINDS) Stroke Data Bank. A simulation study demonstrates the importance of accurate modeling of the spatial correlation structure in data with large numbers of spatially correlated observations such as those found in neuroimaging studies.

journal_name

Biometrics

journal_title

Biometrics

authors

Albert PS,McShane LM

subject

Has Abstract

pub_date

1995-06-01 00:00:00

pages

627-38

issue

2

eissn

0006-341X

issn

1541-0420

journal_volume

51

pub_type

杂志文章
  • Incorporating marginal covariate information in a nonparametric regression model for a sample of R x C tables.

    abstract:SUMMARY:Nonparametric regression models are proposed in the framework of ecological inference for exploratory modeling of disease prevalence rates adjusted for variables, such as age, ethnicity/race, and socio-economic status. Ecological inference is needed when a response variable and covariate are not available at th...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2008.00997.x

    authors: Staniswalis JG

    更新日期:2008-12-01 00:00:00

  • A biological marker model for predicting disease transitions.

    abstract::For patients with chronic myelogenous leukemia (CML), the effect of elevated blood levels of adenosine deaminase (ADA) is studied as a marker for transitions from stable disease to blast crisis and then to death. Data in the form of snapshots over time, with day, state of disease, and ADA level, are analyzed for 55 pa...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Klein JP,Klotz JH,Grever MR

    更新日期:1984-12-01 00:00:00

  • Post-stratification in the randomized clinical trial.

    abstract::A topic of current biometric discussion is whether stratification should be used in randomized clinical trials and, if so, which kind. An approach based upon randomization theory is used to evaluate pre- versus post-stratification. The results obtained relate specifically to the effect of the size of the clinical tria...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: McHugh R,Matts J

    更新日期:1983-03-01 00:00:00

  • Sequential construction of multiple-objective optimal designs.

    abstract::We propose a sequential approach for constructing multiple-objective locally optimal designs for nonlinear models. The technique used here is a general one and we demonstrate the added benefits of using a multiple-objective design over a single-objective design with examples from biomedical studies. ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Huang YC,Wong WK

    更新日期:1998-12-01 00:00:00

  • Ranked set sampling with unequal samples.

    abstract::A ranked set sampling procedure with unequal samples (RSSU) is proposed and used to estimate the population mean. This estimator is then compared with the estimators based on the ranked set sampling (RSS) and median ranked set sampling (MRSS) procedures. It is shown that the relative precisions of the estimator based ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2001.00957.x

    authors: Bhoj DS

    更新日期:2001-09-01 00:00:00

  • Combining multivariate bioassays.

    abstract::Linear multivariate theory is applied to the problem of combining several multivariate bioassays. Results are an asymptotic test of the hypothesis of a common log relative potency; the maximum likelihood estimator of the common log relative potency; and an exact and asymptotic confidence interval estimator for log rel...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Meisner M,Kushner HB,Laska EM

    更新日期:1986-06-01 00:00:00

  • Multimodal neuroimaging data integration and pathway analysis.

    abstract::With advancements in technology, the collection of multiple types of measurements on a common set of subjects is becoming routine in science. Some notable examples include multimodal neuroimaging studies for the simultaneous investigation of brain structure and function and multi-omics studies for combining genetic an...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.13351

    authors: Zhao Y,Li L,Caffo BS

    更新日期:2020-08-13 00:00:00

  • Estimating diagnostic accuracy of raters without a gold standard by exploiting a group of experts.

    abstract::In diagnostic medicine, estimating the diagnostic accuracy of a group of raters or medical tests relative to the gold standard is often the primary goal. When a gold standard is absent, latent class models where the unknown gold standard test is treated as a latent variable are often used. However, these models have b...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2012.01789.x

    authors: Zhang B,Chen Z,Albert PS

    更新日期:2012-12-01 00:00:00

  • Two-stage method of estimation for general linear growth curve models.

    abstract::We extend the linear random-effects growth curve model (REGCM) (Laird and Ware, 1982, Biometrics 38, 963-974) to study the effects of population covariates on one or more characteristics of the growth curve when the characteristics are expressed as linear combinations of the growth curve parameters. This definition in...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Stukel TA,Demidenko E

    更新日期:1997-06-01 00:00:00

  • Estimation of individual genetic effects from binary observations on relatives applied to a family history of respiratory illnesses and chronic lung disease of newborns.

    abstract::This paper considers methods for estimating the relationship between a binary response Y and the genetic effects responsible for a second binary trait Z. The responses Y are observed only for target individuals, and the responses Z are observed only for the relatives of these targets. The analysis consists of two part...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2000.00808.x

    authors: Houwing-Duistermaat JJ,van Houwelingen HC,de Winter JP

    更新日期:2000-09-01 00:00:00

  • Modeling adverse birth outcomes via confirmatory factor quantile regression.

    abstract::We describe a Bayesian quantile regression model that uses a confirmatory factor structure for part of the design matrix. This model is appropriate when the covariates are indicators of scientifically determined latent factors, and it is these latent factors that analysts seek to include as predictors in the quantile ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2011.01639.x

    authors: Burgette LF,Reiter JP

    更新日期:2012-03-01 00:00:00

  • Comparison of different methods for decision-making in bioequivalence assessment.

    abstract::If the regulatory requirements are symmetrical, the use of symmetrical confidence intervals as a decision rule for bioequivalence assessment leads, as shown by simulations, to better level properties and an inferior power compared to a rule based on shortest confidence intervals. A choice between these two approaches ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Mandallaz D,Mau J

    更新日期:1981-06-01 00:00:00

  • Outlier reduction by an option-3 measurement scheme.

    abstract::Detecting changes in longitudinal data is important in medical research. However, the existence of measurement outliers can cause an unexpected increase in the false alarm rate in claiming changes. To reduce the outliers, a new method has been developed. In this scheme, two measures are initially taken and, if they ar...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Namgung YY,Yang MC

    更新日期:1994-03-01 00:00:00

  • Efficiency of balanced treatment allocation for survival analysis.

    abstract::We assess the efficiency of balanced treatment allocation methods in clinical trials for comparing treatments with respect to survival. We compare optimal designs for each of three standard survival analysis techniques (maximum partial likelihood estimation, log-rank test, exponential regression) with balanced designs...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Kalish LA,Harrington DP

    更新日期:1988-09-01 00:00:00

  • Nonparametric estimation of ROC curves in the absence of a gold standard.

    abstract::In the evaluation of diagnostic accuracy of tests, a gold standard on the disease status is required. However, in many complex diseases, it is impossible or unethical to obtain such a gold standard. If an imperfect standard is used, the estimated accuracy of the tests would be biased. This type of bias is called imper...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2005.00324.x

    authors: Zhou XH,Castelluccio P,Zhou C

    更新日期:2005-06-01 00:00:00

  • Spatial-temporal modeling of the association between air pollution exposure and preterm birth: identifying critical windows of exposure.

    abstract::Exposure to high levels of air pollution during the pregnancy is associated with increased probability of preterm birth (PTB), a major cause of infant morbidity and mortality. New statistical methodology is required to specifically determine when a particular pollutant impacts the PTB outcome, to determine the role of...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2012.01774.x

    authors: Warren J,Fuentes M,Herring A,Langlois P

    更新日期:2012-12-01 00:00:00

  • A spatial Bayesian latent factor model for image-on-image regression.

    abstract::Image-on-image regression analysis, using images to predict images, is a challenging task, due to (1) the high dimensionality and (2) the complex spatial dependence structures in image predictors and image outcomes. In this work, we propose a novel image-on-image regression model, by extending a spatial Bayesian laten...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.13420

    authors: Guo C,Kang J,Johnson TD

    更新日期:2020-12-27 00:00:00

  • Survival estimation using splines.

    abstract::A nonparametric maximum likelihood procedure is given for estimating the survivor function from right-censored data. It approximates the hazard rate by a simple function such as a spline, with different approximations yielding different estimators. A special case is that proposed by Nelson (1969, Journal of Quality Te...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Whittemore AS,Keller JB

    更新日期:1986-09-01 00:00:00

  • False discovery rate estimation for frequentist pharmacovigilance signal detection methods.

    abstract::Pharmacovigilance systems aim at early detection of adverse effects of marketed drugs. They maintain large spontaneous reporting databases for which several automatic signaling methods have been developed. One limit of those methods is that the decision rules for the signal generation are based on arbitrary thresholds...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2009.01262.x

    authors: Ahmed I,Dalmasso C,Haramburu F,Thiessard F,Broët P,Tubert-Bitter P

    更新日期:2010-03-01 00:00:00

  • A Bayesian approach to jointly modeling toxicity and biomarker expression in a phase I/II dose-finding trial.

    abstract::In this article, we propose a Bayesian approach to phase I/II dose-finding oncology trials by jointly modeling a binary toxicity outcome and a continuous biomarker expression outcome. We apply our method to a clinical trial of a new gene therapy for bladder cancer patients. In this trial, the biomarker expression indi...

    journal_title:Biometrics

    pub_type: 临床试验,杂志文章

    doi:10.1111/j.1541-0420.2005.00314.x

    authors: Bekele BN,Shen Y

    更新日期:2005-06-01 00:00:00

  • Regional spatial modeling of topsoil geochemistry.

    abstract::Geographic information about the levels of toxics in environmental media is commonly used in regional environmental health studies when direct measurements of personal exposure is limited or unavailable. In this article, we propose a statistical framework for analyzing the spatial distribution of topsoil geochemical p...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2008.01041.x

    authors: Calder CA,Craigmile PF,Zhang J

    更新日期:2009-03-01 00:00:00

  • Multiclass linear discriminant analysis with ultrahigh-dimensional features.

    abstract::Within the framework of Fisher's discriminant analysis, we propose a multiclass classification method which embeds variable screening for ultrahigh-dimensional predictors. Leveraging interfeature correlations, we show that the proposed linear classifier recovers informative features with probability tending to one and...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.13065

    authors: Li Y,Hong HG,Li Y

    更新日期:2019-12-01 00:00:00

  • Dynamic models for estimating the effect of HAART on CD4 in observational studies: Application to the Aquitaine Cohort and the Swiss HIV Cohort Study.

    abstract::Highly active antiretroviral therapy (HAART) has proved efficient in increasing CD4 counts in many randomized clinical trials. Because randomized trials have some limitations (e.g., short duration, highly selected subjects), it is interesting to assess the effect of treatments using observational studies. This is chal...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12564

    authors: Prague M,Commenges D,Gran JM,Ledergerber B,Young J,Furrer H,Thiébaut R

    更新日期:2017-03-01 00:00:00

  • Latent variable models for longitudinal data with multiple continuous outcomes.

    abstract::Multiple outcomes are often used to properly characterize an effect of interest. This paper proposes a latent variable model for the situation where repeated measures over time are obtained on each outcome. These outcomes are assumed to measure an underlying quantity of main interest from different perspectives. We re...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2000.01047.x

    authors: Roy J,Lin X

    更新日期:2000-12-01 00:00:00

  • Likelihood ratio tests for a dose-response effect using multiple nonlinear regression models.

    abstract::We consider the problem of testing for a dose-related effect based on a candidate set of (typically nonlinear) dose-response models using likelihood-ratio tests. For the considered models this reduces to assessing whether the slope parameter in these nonlinear regression models is zero or not. A technical problem is t...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12563

    authors: Gutjahr G,Bornkamp B

    更新日期:2017-03-01 00:00:00

  • Use of historical marker data for assessing treatment effects in phase I/II trials when subject selection is determined by baseline marker level.

    abstract::Although the primary focus of Phase I clinical trials is to assess clinical pharmacology and possible toxicities, any information on the potential effect of treatment would be useful in helping to determine priorities between treatments for further study. We consider the scenario where data are routinely collected on ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Lin HM,Hughes MD

    更新日期:1995-09-01 00:00:00

  • A marginal mixed baseline hazards model for multivariate failure time data.

    abstract::In multivariate failure time data analysis, a marginal regression modeling approach is often preferred to avoid assumptions on the dependence structure among correlated failure times. In this paper, a marginal mixed baseline hazards model is introduced. Estimating equations are proposed for the estimation of the margi...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.1999.00805.x

    authors: Clegg LX,Cai J,Sen PK

    更新日期:1999-09-01 00:00:00

  • Order-preserving dimension reduction procedure for the dominance of two mean curves with application to tidal volume curves.

    abstract::The paper here presented was motivated by a case study involving high-dimensional and high-frequency tidal volume traces measured during induced panic attacks. The focus was to develop a procedure to determine the significance of whether a mean curve dominates another one. The key idea of the suggested method relies o...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2007.00959.x

    authors: Lee SH,Lim J,Vannucci M,Petkova E,Preter M,Klein DF

    更新日期:2008-09-01 00:00:00

  • Interval estimation of the risk ratio between a secondary infection, given a primary infection, and the primary infection.

    abstract::This paper discusses interval estimation of the risk ratio (RR) between a secondary infection, given a primary infection, and the primary infection. Three asymptotic closed-form interval estimators are developed using Wald's test statistic, the logarithmic transformation, and Fieller's theorem. The performance of thes...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Lui KJ

    更新日期:1998-06-01 00:00:00

  • Two-group Poisson-Dirichlet mixtures for multiple testing.

    abstract::The simultaneous testing of multiple hypotheses is common to the analysis of high-dimensional data sets. The two-group model, first proposed by Efron, identifies significant comparisons by allocating observations to a mixture of an empirical null and an alternative distribution. In the Bayesian nonparametrics literatu...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.13314

    authors: Denti F,Guindani M,Leisen F,Lijoi A,Wadsworth WD,Vannucci M

    更新日期:2020-06-14 00:00:00