Multiclass linear discriminant analysis with ultrahigh-dimensional features.

Abstract:

:Within the framework of Fisher's discriminant analysis, we propose a multiclass classification method which embeds variable screening for ultrahigh-dimensional predictors. Leveraging interfeature correlations, we show that the proposed linear classifier recovers informative features with probability tending to one and can asymptotically achieve a zero misclassification rate. We evaluate the finite sample performance of the method via extensive simulations and use this method to classify posttransplantation rejection types based on patients' gene expressions.

journal_name

Biometrics

journal_title

Biometrics

authors

Li Y,Hong HG,Li Y

doi

10.1111/biom.13065

subject

Has Abstract

pub_date

2019-12-01 00:00:00

pages

1086-1097

issue

4

eissn

0006-341X

issn

1541-0420

journal_volume

75

pub_type

杂志文章
  • Time series models based on generalized linear models: some further results.

    abstract::This paper considers the problem of extending the classical moving average models to time series with conditional distributions given by generalized linear models. These models have the advantage of easy construction and estimation. Statistical modelling techniques are also proposed. Some simulation results and an ill...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Li WK

    更新日期:1994-06-01 00:00:00

  • False discovery rate estimation for frequentist pharmacovigilance signal detection methods.

    abstract::Pharmacovigilance systems aim at early detection of adverse effects of marketed drugs. They maintain large spontaneous reporting databases for which several automatic signaling methods have been developed. One limit of those methods is that the decision rules for the signal generation are based on arbitrary thresholds...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2009.01262.x

    authors: Ahmed I,Dalmasso C,Haramburu F,Thiessard F,Broët P,Tubert-Bitter P

    更新日期:2010-03-01 00:00:00

  • A moving blocks empirical likelihood method for longitudinal data.

    abstract::In the analysis of longitudinal or panel data, neglecting the serial correlations among the repeated measurements within subjects may lead to inefficient inference. In particular, when the number of repeated measurements is large, it may be desirable to model the serial correlations more generally. An appealing approa...

    journal_title:Biometrics

    pub_type: 杂志文章,随机对照试验

    doi:10.1111/biom.12317

    authors: Qiu J,Wu L

    更新日期:2015-09-01 00:00:00

  • Incorporating correlation for multivariate failure time data when cluster size is large.

    abstract::We propose a new estimation method for multivariate failure time data using the quadratic inference function (QIF) approach. The proposed method efficiently incorporates within-cluster correlations. Therefore, it is more efficient than those that ignore within-cluster correlation. Furthermore, the proposed method is e...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2009.01307.x

    authors: Xue L,Wang L,Qu A

    更新日期:2010-06-01 00:00:00

  • An improved life table method.

    abstract::A life table estimates probabilities of surviving and of dying as well as death rates, as these would apply in a stationary population with the same underlying continuous mortality curve as the observed population. We have derived approximations to the probability of surviving that require no iteration, do not depend ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Keyfitz N,Frauenthal J

    更新日期:1975-12-01 00:00:00

  • Determining the number of clusters using the weighted gap statistic.

    abstract::Estimating the number of clusters in a data set is a crucial step in cluster analysis. In this article, motivated by the gap method (Tibshirani, Walther, and Hastie, 2001, Journal of the Royal Statistical Society B63, 411-423), we propose the weighted gap and the difference of difference-weighted (DD-weighted) gap met...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2007.00784.x

    authors: Yan M,Ye K

    更新日期:2007-12-01 00:00:00

  • The effect of screening on some pretest-posttest test variances.

    abstract::The clinical trial design in which the endpoint is measured both at baseline and at the end of the study is used in a variety of situations. For two-group designs, test such as the t test or analysis of covariance are commonly used to evaluate treatment efficacy. Often such pretest-posttest trials restrict participati...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Follmann DA

    更新日期:1991-06-01 00:00:00

  • The use of frailty hazard models for unrecognized heterogeneity that interacts with treatment: considerations of efficiency and power.

    abstract::Increasingly, genetic studies of tumors of the same histologic diagnosis are elucidating subtypes that are distinct with respect to clinical endpoints such as response to treatment and survival. This raises concerns about the efficiency of using the simple log-rank test for analysis of treatment effect on survival in ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2002.00232.x

    authors: Li Y,Betensky RA,Louis DN,Cairncross JG

    更新日期:2002-03-01 00:00:00

  • Exact inference on the random-effects model for meta-analyses with few studies.

    abstract::We describe an exact, unconditional, non-randomized procedure for producing confidence intervals for the grand mean in a normal-normal random effects meta-analysis. The procedure targets meta-analyses based on too few primary studies, ≤ 7 , say, to ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12998

    authors: Michael H,Thornton S,Xie M,Tian L

    更新日期:2019-06-01 00:00:00

  • Semiparametric estimation of the covariate-specific ROC curve in presence of ignorable verification bias.

    abstract::Covariate-specific receiver operating characteristic (ROC) curves are often used to evaluate the classification accuracy of a medical diagnostic test or a biomarker, when the accuracy of the test is associated with certain covariates. In many large-scale screening tests, the gold standard is subject to missingness due...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2011.01562.x

    authors: Liu D,Zhou XH

    更新日期:2011-09-01 00:00:00

  • Validity of tests under covariate-adaptive biased coin randomization and generalized linear models.

    abstract::Some covariate-adaptive randomization methods have been used in clinical trials for a long time, but little theoretical work has been done about testing hypotheses under covariate-adaptive randomization until Shao et al. (2010) who provided a theory with detailed discussion for responses under linear models. In this a...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12062

    authors: Shao J,Yu X

    更新日期:2013-12-01 00:00:00

  • Assessing the goodness-of-fit of hidden Markov models.

    abstract::In this article, we propose a graphical technique for assessing the goodness-of-fit of a stationary hidden Markov model (HMM). We show that plots of the estimated distribution against the empirical distribution detect lack of fit with high probability for large sample sizes. By considering plots of the univariate and ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341X.2004.00189.x

    authors: MacKay Altman R

    更新日期:2004-06-01 00:00:00

  • Permutation tests for random effects in linear mixed models.

    abstract::Inference regarding the inclusion or exclusion of random effects in linear mixed models is challenging because the variance components are located on the boundary of their parameter space under the usual null hypothesis. As a result, the asymptotic null distribution of the Wald, score, and likelihood ratio tests will ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2011.01675.x

    authors: Lee OE,Braun TM

    更新日期:2012-06-01 00:00:00

  • Pedigree analysis for quantitative traits: variance components without matrix inversion.

    abstract::Recent developments in the animal breeding literature facilitate estimation of the variance components in quantitative genetic models. However, computation remains intensive, and many of the procedures are restricted to specialized designs and models, unsuited to data arising from studies of natural populations. We de...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Thompson EA,Shaw RG

    更新日期:1990-06-01 00:00:00

  • Small sample inference for fixed effects from restricted maximum likelihood.

    abstract::Restricted maximum likelihood (REML) is now well established as a method for estimating the parameters of the general Gaussian linear model with a structured covariance matrix, in particular for mixed linear models. Conventionally, estimates of precision and inference for fixed effects are based on their asymptotic di...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Kenward MG,Roger JH

    更新日期:1997-09-01 00:00:00

  • On identifiability in capture-recapture models.

    abstract::We study the issue of identifiability of mixture models in the context of capture-recapture abundance estimation for closed populations. Such models are used to take account of individual heterogeneity in capture probabilities, but their validity was recently questioned by Link (2003, Biometrics 59, 1123-1130) on the ...

    journal_title:Biometrics

    pub_type: 评论,杂志文章

    doi:10.1111/j.1541-0420.2006.00637_1.x

    authors: Holzmann H,Munk A,Zucchini W

    更新日期:2006-09-01 00:00:00

  • Improved dynamic predictions from joint models of longitudinal and survival data with time-varying effects using P-splines.

    abstract::In the field of cardio-thoracic surgery, valve function is monitored over time after surgery. The motivation for our research comes from a study which includes patients who received a human tissue valve in the aortic position. These patients are followed prospectively over time by standardized echocardiographic assess...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12814

    authors: Andrinopoulou ER,Eilers PHC,Takkenberg JJM,Rizopoulos D

    更新日期:2018-06-01 00:00:00

  • Regression calibration in semiparametric accelerated failure time models.

    abstract::In large cohort studies, it often happens that some covariates are expensive to measure and hence only measured on a validation set. On the other hand, relatively cheap but error-prone measurements of the covariates are available for all subjects. Regression calibration (RC) estimation method (Prentice, 1982, Biometri...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2009.01295.x

    authors: Yu M,Nan B

    更新日期:2010-06-01 00:00:00

  • Power and sample size for testing homogeneity of relative risks in prospective studies.

    abstract::Power and sample-size formulas for testing the homogeneity of relative risks using the score method are presented. The homogeneity score test (Gart, 1985, Biometrika 72, 673-677) is formally equivalent to the Pearson chi-square test, although they look different. Results of this paper may be useful in assessing the va...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.1999.00289.x

    authors: Nam JM

    更新日期:1999-03-01 00:00:00

  • A permutation approach for selecting the penalty parameter in penalized model selection.

    abstract::We describe a simple, computationally efficient, permutation-based procedure for selecting the penalty parameter in LASSO-penalized regression. The procedure, permutation selection, is intended for applications where variable selection is the primary focus, and can be applied in a variety of structural settings, inclu...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12359

    authors: Sabourin JA,Valdar W,Nobel AB

    更新日期:2015-12-01 00:00:00

  • Bayesian inference for two-phase studies with categorical covariates.

    abstract::In this article, we consider two-phase sampling in the situation in which all covariates are categorical. Two-phase designs are appealing from an efficiency perspective since they allow sampling to be concentrated in informative cells. A number of likelihood-based methods have been developed for the analysis of two-ph...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12019

    authors: Ross M,Wakefield J

    更新日期:2013-06-01 00:00:00

  • A Monte Carlo investigation of homogeneity tests of the odds ratio under various sample size configurations.

    abstract::Epidemiologic data for case-control studies are often summarized into K 2 x 2 tables. Given a fixed number of cases and controls, the degree of sparseness in the data depends on the number of strata, K. The effect of increasing stratification on size and power of seven tests of homogeneity of the odds ratio is studied...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Jones MP,O'Gorman TW,Lemke JH,Woolson RF

    更新日期:1989-03-01 00:00:00

  • Incorporating marginal covariate information in a nonparametric regression model for a sample of R x C tables.

    abstract:SUMMARY:Nonparametric regression models are proposed in the framework of ecological inference for exploratory modeling of disease prevalence rates adjusted for variables, such as age, ethnicity/race, and socio-economic status. Ecological inference is needed when a response variable and covariate are not available at th...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2008.00997.x

    authors: Staniswalis JG

    更新日期:2008-12-01 00:00:00

  • Assessing the causal effect of organ transplantation on the distribution of residual lifetime.

    abstract::Because the number of patients waiting for organ transplants exceeds the number of organs available, a better understanding of how transplantation affects the distribution of residual lifetime is needed to improve organ allocation. However, there has been little work to assess the survival benefit of transplantation f...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12084

    authors: Vock DM,Tsiatis AA,Davidian M,Laber EB,Tsuang WM,Finlen Copeland CA,Palmer SM

    更新日期:2013-12-01 00:00:00

  • Pleiotropy informed adaptive association test of multiple traits using genome-wide association study summary data.

    abstract::Genetic variants associated with disease outcomes can be used to develop personalized treatment. To reach this precision medicine goal, hundreds of large-scale genome-wide association studies (GWAS) have been conducted in the past decade to search for promising genetic variants associated with various traits. They hav...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.13076

    authors: Masotti M,Guo B,Wu B

    更新日期:2019-12-01 00:00:00

  • A generalized estimating equation approach for modeling random length binary vector data.

    abstract::A common measure in clinical trials and epidemiologic studies is the number of events such as seizures, hospitalizations, or bouts of disease. Frequently, a binary measure of severity for each event is available but is not incorporated in the analysis. This paper proposes methodology for jointly modeling the number of...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Albert PS,Follmann DA,Barnhart HX

    更新日期:1997-09-01 00:00:00

  • A Bayesian approach to jointly modeling toxicity and biomarker expression in a phase I/II dose-finding trial.

    abstract::In this article, we propose a Bayesian approach to phase I/II dose-finding oncology trials by jointly modeling a binary toxicity outcome and a continuous biomarker expression outcome. We apply our method to a clinical trial of a new gene therapy for bladder cancer patients. In this trial, the biomarker expression indi...

    journal_title:Biometrics

    pub_type: 临床试验,杂志文章

    doi:10.1111/j.1541-0420.2005.00314.x

    authors: Bekele BN,Shen Y

    更新日期:2005-06-01 00:00:00

  • Memory in coal tits: an alternative model.

    abstract::Jolliffe and Jolliffe (1997, Biometrics 53, 1136-1142) proposed various models for data from an experiment on memory in coal tits. This article describes an alternative model, which fits equally well and which may be simpler to interpret. ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.1999.00660.x

    authors: Ridout MS

    更新日期:1999-06-01 00:00:00

  • Objective Bayesian search of Gaussian directed acyclic graphical models for ordered variables with non-local priors.

    abstract::Directed acyclic graphical (DAG) models are increasingly employed in the study of physical and biological systems to model direct influences between variables. Identifying the graph from data is a challenging endeavor, which can be more reasonably tackled if the variables are assumed to satisfy a given ordering; in th...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12018

    authors: Altomare D,Consonni G,La Rocca L

    更新日期:2013-06-01 00:00:00

  • A Bayesian approach to the analysis of quantal bioassay studies using nonparametric mixture models.

    abstract::We develop a Bayesian nonparametric mixture modeling framework for quantal bioassay settings. The approach is built upon modeling dose-dependent response distributions. We adopt a structured nonparametric prior mixture model, which induces a monotonicity restriction for the dose-response curve. Particular emphasis is ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12120

    authors: Fronczyk K,Kottas A

    更新日期:2014-03-01 00:00:00