A Bayesian approach to the analysis of quantal bioassay studies using nonparametric mixture models.

Abstract:

:We develop a Bayesian nonparametric mixture modeling framework for quantal bioassay settings. The approach is built upon modeling dose-dependent response distributions. We adopt a structured nonparametric prior mixture model, which induces a monotonicity restriction for the dose-response curve. Particular emphasis is placed on the key risk assessment goal of calibration for the dose level that corresponds to a specified response. The proposed methodology yields flexible inference for the dose-response relationship as well as for other inferential objectives, as illustrated with two data sets from the literature.

journal_name

Biometrics

journal_title

Biometrics

authors

Fronczyk K,Kottas A

doi

10.1111/biom.12120

subject

Has Abstract

pub_date

2014-03-01 00:00:00

pages

95-102

issue

1

eissn

0006-341X

issn

1541-0420

journal_volume

70

pub_type

杂志文章
  • Real-time individual predictions of prostate cancer recurrence using joint models.

    abstract::Patients who were previously treated for prostate cancer with radiation therapy are monitored at regular intervals using a laboratory test called Prostate Specific Antigen (PSA). If the value of the PSA test starts to rise, this is an indication that the prostate cancer is more likely to recur, and the patient may wis...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2012.01823.x

    authors: Taylor JM,Park Y,Ankerst DP,Proust-Lima C,Williams S,Kestin L,Bae K,Pickles T,Sandler H

    更新日期:2013-03-01 00:00:00

  • Multiple imputation for model checking: completed-data plots with missing and latent data.

    abstract::In problems with missing or latent data, a standard approach is to first impute the unobserved data, then perform all statistical analyses on the completed dataset--corresponding to the observed data and imputed unobserved data--using standard procedures for complete-data inference. Here, we extend this approach to mo...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341X.2005.031010.x

    authors: Gelman A,Van Mechelen I,Verbeke G,Heitjan DF,Meulders M

    更新日期:2005-03-01 00:00:00

  • Likelihood ratio tests for a dose-response effect using multiple nonlinear regression models.

    abstract::We consider the problem of testing for a dose-related effect based on a candidate set of (typically nonlinear) dose-response models using likelihood-ratio tests. For the considered models this reduces to assessing whether the slope parameter in these nonlinear regression models is zero or not. A technical problem is t...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12563

    authors: Gutjahr G,Bornkamp B

    更新日期:2017-03-01 00:00:00

  • Buckley-James-type estimator with right-censored and length-biased data.

    abstract::We present a natural generalization of the Buckley-James-type estimator for traditional survival data to right-censored length-biased data under the accelerated failure time (AFT) model. Length-biased data are often encountered in prevalent cohort studies and cancer screening trials. Informative right censoring induce...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2011.01568.x

    authors: Ning J,Qin J,Shen Y

    更新日期:2011-12-01 00:00:00

  • Confidence intervals for the generalized ROC criterion.

    abstract::Receiver operating characteristic (ROC) curves are frequently used to assess the usefulness of diagnostic markers. When several diagnostic markers are available, they can be combined by a best linear combination: that is, when the area under the ROC curve of this combination is maximized among all possible linear comb...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Reiser B,Faraggi D

    更新日期:1997-06-01 00:00:00

  • Confidence intervals and P-values for meta-analysis with publication bias.

    abstract::We study publication bias in meta-analysis by supposing there is a population (y, sigma) of studies which give treatment effect estimates y approximately N(theta, sigma(2)). A selection function describes the probability that each study is selected for review. The overall estimate of theta depends on the studies selec...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2006.00705.x

    authors: Henmi M,Copas JB,Eguchi S

    更新日期:2007-06-01 00:00:00

  • Bayesian modeling of multiple episode occurrence and severity with a terminating event.

    abstract::An individual's health condition can affect the frequency and intensity of episodes that can occur repeatedly and that may be related to an event time of interest. For example, bleeding episodes during pregnancy may indicate problems predictive of preterm delivery. Motivated by this application, we propose a joint mod...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2006.00720.x

    authors: Herring AH,Yang J

    更新日期:2007-06-01 00:00:00

  • Testing equality of survival functions based on both paired and unpaired censored data.

    abstract::We introduce two test procedures for comparing two survival distributions on the basis of randomly right-censored data consisting of both paired and unpaired observations. Our procedures are based on generalizations of a pooled rank test statistic previously proposed for uncensored data. One generalization adapts the ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2000.00154.x

    authors: Dallas MJ,Rao PV

    更新日期:2000-03-01 00:00:00

  • On the treatment of grouped observations in life studies.

    abstract::Assuming a model of proportional failure rates, Cox (1972) presents a systematic study of the use of covariates in the analysis of life time. The treatment of tied observations is a particularly troublesome point in both theory and application. It appears that grouping rather than discrete time is the right way to han...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Thompson WA Jr

    更新日期:1977-09-01 00:00:00

  • A Bayesian hidden Markov model for detecting differentially methylated regions.

    abstract::Alterations in DNA methylation have been linked to the development and progression of many diseases. The bisulfite sequencing technique presents methylation profiles at base resolution. Count data on methylated and unmethylated reads provide information on the methylation level at each CpG site. As more bisulfite sequ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.13000

    authors: Ji T

    更新日期:2019-06-01 00:00:00

  • Models for circular-linear and circular-circular data constructed from circular distributions based on nonnegative trigonometric sums.

    abstract::Johnson and Wehrly (1978, Journal of the American Statistical Association 73, 602-606) and Wehrly and Johnson (1980, Biometrika 67, 255-256) show one way to construct the joint distribution of a circular and a linear random variable, or the joint distribution of a pair of circular random variables from their marginal ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2006.00716.x

    authors: Fernández-Durán JJ

    更新日期:2007-06-01 00:00:00

  • A note on estimating crude odds ratios in case-control studies with differentially misclassified exposure.

    abstract::Morrissey and Spiegelman (1999, Biometrics 55, 338 344) provided a comparative study of adjustment methods for exposure misclassification in case-control studies equipped with an internal validation sample. In addition to the maximum likelihood (ML) approach, they considered two intuitive procedures based on proposals...

    journal_title:Biometrics

    pub_type: 评论,杂志文章

    doi:10.1111/j.0006-341x.2002.1034_1.x

    authors: Lyles RH

    更新日期:2002-12-01 00:00:00

  • Robustness of group testing in the estimation of proportions.

    abstract::In binomial group testing, unlike one-at-a-time testing, the test unit consists of a group of individuals, and each group is declared to be defective or nondefective. A defective group is one that is presumed to include one or more defective (e.g., infected, positive) individuals and a nondefective group to contain on...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.1999.00231.x

    authors: Hung M,Swallow WH

    更新日期:1999-03-01 00:00:00

  • Fisher's contributions to genetics and heredity, with special emphasis on the Gregor Mendel controversy.

    abstract::R. A. Fisher is widely respected for his contributions to both statistics and genetics. For instance, his 1930 text on The Genetical Theory of Natural Selection remains a watershed contribution in that area. Fisher's subsequent research led him to study the work of (Johann) Gregor Mendel, the 19th century monk who fir...

    journal_title:Biometrics

    pub_type: 传,历史文章,杂志文章,评审

    doi:

    authors: Piegorsch WW

    更新日期:1990-12-01 00:00:00

  • On symmetric semiparametric two-sample problem.

    abstract::We consider a two-sample problem where data come from symmetric distributions. Usual two-sample data with only magnitudes recorded, arising from case-control studies or logistic discriminant analyses, may constitute a symmetric two-sample problem. We propose a semiparametric model such that, in addition to symmetry, t...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.13233

    authors: Li M,Diao G,Qin J

    更新日期:2020-12-01 00:00:00

  • Likelihood-ratio tests for hidden Markov models.

    abstract::We consider hidden Markov models as a versatile class of models for weakly dependent random phenomena. The topic of the present paper is likelihood-ratio testing for hidden Markov models, and we show that, under appropriate conditions, the standard asymptotic theory of likelihood-ratio tests is valid. Such tests are c...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2000.00742.x

    authors: Giudici P,Rydén T,Vandekerkhove P

    更新日期:2000-09-01 00:00:00

  • Locally efficient estimation of the quality-adjusted lifetime distribution with right-censored data and covariates.

    abstract::Zhao and Tsiatis (1997) consider the problem of estimation of the distribution of the quality-adjusted lifetime when the chronological survival time is subject to right censoring. The quality-adjusted lifetime is typically defined as a weighted sum of the times spent in certain states up until death or some other fail...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.1999.00530.x

    authors: van der Laan MJ,Hubbard A

    更新日期:1999-06-01 00:00:00

  • Semiparametric methods to contrast gap time survival functions: Application to repeat kidney transplantation.

    abstract::Times between successive events (i.e., gap times) are of great importance in survival analysis. Although many methods exist for estimating covariate effects on gap times, very few existing methods allow for comparisons between gap times themselves. Motivated by the comparison of primary and repeat transplantation, our...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12427

    authors: Shu X,Schaubel DE

    更新日期:2016-06-01 00:00:00

  • Identification of differential aberrations in multiple-sample array CGH studies.

    abstract::Most existing methods for identifying aberrant regions with array CGH data are confined to a single target sample. Focusing on the comparison of multiple samples from two different groups, we develop a new penalized regression approach with a fused adaptive lasso penalty to accommodate the spatial dependence of the cl...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2010.01457.x

    authors: Wang HJ,Hu J

    更新日期:2011-06-01 00:00:00

  • A comparison of several point estimators of the odds ratio in a single 2 x 2 contingency table.

    abstract::The relative performance of the unconditioned maximum likelihood estimators (UMLEs), conditional MLEs (CMLEs), and Jewell-type estimators of the odds ratio (OR) and its logarithm were investigated in sets of single 2 x 2 contingency tables. The tables were generated by complete enumeration of all possible cell frequen...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Walter SD,Cook RJ

    更新日期:1991-09-01 00:00:00

  • Subsampling versus bootstrapping in resampling-based model selection for multivariable regression.

    abstract::In recent years, increasing attention has been devoted to the problem of the stability of multivariable regression models, understood as the resistance of the model to small changes in the data on which it has been fitted. Resampling techniques, mainly based on the bootstrap, have been developed to address this issue....

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12381

    authors: De Bin R,Janitza S,Sauerbrei W,Boulesteix AL

    更新日期:2016-03-01 00:00:00

  • Instrumental variable method for time-to-event data using a pseudo-observation approach.

    abstract::Observational studies are often in peril of unmeasured confounding. Instrumental variable analysis is a method for controlling for unmeasured confounding. As yet, theory on instrumental variable analysis of censored time-to-event data is scarce. We propose a pseudo-observation approach to instrumental variable analysi...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12451

    authors: Kjaersgaard MI,Parner ET

    更新日期:2016-06-01 00:00:00

  • A comment on optimal allocations for bioequivalence studies.

    abstract::A method purporting to provide optimal allocations in bioequivalence studies fails to do so on both statistical and practical grounds. Reasons as to why this is so are given. ...

    journal_title:Biometrics

    pub_type: 评论,杂志文章

    doi:10.1111/j.0006-341x.1999.01314.x

    authors: Senn S,Grieve AP

    更新日期:1999-12-01 00:00:00

  • Adaptive decision making in a lymphocyte infusion trial.

    abstract::We describe an adaptive Bayesian design for a clinical trial of an experimental treatment for patients with hematologic malignancies who initially received an allogeneic bone marrow transplant but subsequently suffered a disease recurrence. Treatment consists of up to two courses of targeted immunotherapy followed by ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2002.00560.x

    authors: Thall PF,Inoue LY,Martin TG

    更新日期:2002-09-01 00:00:00

  • Assessing effects of cholera vaccination in the presence of interference.

    abstract::Interference occurs when the treatment of one person affects the outcome of another. For example, in infectious diseases, whether one individual is vaccinated may affect whether another individual becomes infected or develops disease. Quantifying such indirect (or spillover) effects of vaccination could have important...

    journal_title:Biometrics

    pub_type: 杂志文章,随机对照试验

    doi:10.1111/biom.12184

    authors: Perez-Heydrich C,Hudgens MG,Halloran ME,Clemens JD,Ali M,Emch ME

    更新日期:2014-09-01 00:00:00

  • Semiparametric maximum likelihood for nonlinear regression with measurement errors.

    abstract::This article demonstrates semiparametric maximum likelihood estimation of a nonlinear growth model for fish lengths using imprecisely measured ages. Data on the species corvina reina, found in the Gulf of Nicoya, Costa Rica, consist of lengths and imprecise ages for 168 fish and precise ages for a subset of 16 fish. T...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2002.00448.x

    authors: Suh EY,Schafer DW

    更新日期:2002-06-01 00:00:00

  • Outlier reduction by an option-3 measurement scheme.

    abstract::Detecting changes in longitudinal data is important in medical research. However, the existence of measurement outliers can cause an unexpected increase in the false alarm rate in claiming changes. To reduce the outliers, a new method has been developed. In this scheme, two measures are initially taken and, if they ar...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Namgung YY,Yang MC

    更新日期:1994-03-01 00:00:00

  • A proposal for a goodness-of-fit test to the Arnason-Schwarz multisite capture-recapture model.

    abstract::In an analysis of capture-recapture data, the identification of a model that fits is a critical step. For the multisite (also called multistate) models used to analyze data gathered at several sites, no reliable test for assessing fit is currently available. We propose a test for the JMV model, a simple generalization...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/1541-0420.00006

    authors: Pradel R,Wintrebert CM,Gimenez O

    更新日期:2003-03-01 00:00:00

  • Determining the number of clusters using the weighted gap statistic.

    abstract::Estimating the number of clusters in a data set is a crucial step in cluster analysis. In this article, motivated by the gap method (Tibshirani, Walther, and Hastie, 2001, Journal of the Royal Statistical Society B63, 411-423), we propose the weighted gap and the difference of difference-weighted (DD-weighted) gap met...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2007.00784.x

    authors: Yan M,Ye K

    更新日期:2007-12-01 00:00:00

  • Nonparametric discrete survival function estimation with uncertain endpoints using an internal validation subsample.

    abstract::When a true survival endpoint cannot be assessed for some subjects, an alternative endpoint that measures the true endpoint with error may be collected, which often occurs when obtaining the true endpoint is too invasive or costly. We develop an estimated likelihood function for the situation where we have both uncert...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12316

    authors: Zee J,Xie SX

    更新日期:2015-09-01 00:00:00