Estimation of individual genetic effects from binary observations on relatives applied to a family history of respiratory illnesses and chronic lung disease of newborns.

Abstract:

:This paper considers methods for estimating the relationship between a binary response Y and the genetic effects responsible for a second binary trait Z. The responses Y are observed only for target individuals, and the responses Z are observed only for the relatives of these targets. The analysis consists of two parts. The first part concerns the analysis of the family data Z and the second part estimates the relation between the genetic effects and Y. For the family data, a generalized linear mixed model with a logit link and Gaussian genetic (random) effects is used. Estimates of the variances of the genetic effects are obtained by using a pseudo-profile log-likelihood method. Estimation of the log likelihood involves averaging over n-dimensional normal distributions, which is done by importance sampling. The methods used in the second part are straightforward. The methods are applied to a data set containing chronic lung disease (CLDN) responses of newborns and asthma (AS), allergy (AL), chronic bronchitis (CB) and eczema (EC) responses observed for the relatives of these newborns. The clinical question is whether genetic effects of AS, AL, CB, and EC have an effect on the risk for CLDN. It can be concluded that for AS, AL, CB, and EC, the influence of genetic effects is significant. However, these genetic predispositions have no significant effect on CLDN.

journal_name

Biometrics

journal_title

Biometrics

authors

Houwing-Duistermaat JJ,van Houwelingen HC,de Winter JP

doi

10.1111/j.0006-341x.2000.00808.x

subject

Has Abstract

pub_date

2000-09-01 00:00:00

pages

808-14

issue

3

eissn

0006-341X

issn

1541-0420

journal_volume

56

pub_type

杂志文章
  • Prediction in the presence of measurement error: general discussion and an example predicting defoliation.

    abstract::Motivated by the particular problem of predicting defoliation based on a measure of gypsy moth egg mass density, prediction in the presence of measurement error is discussed. The measurement error variances and covariances are allowed to vary from unit to unit and are estimated by some type of within unit sampling. A ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Buonaccorsi JP

    更新日期:1995-12-01 00:00:00

  • Semiparametric estimation of the covariate-specific ROC curve in presence of ignorable verification bias.

    abstract::Covariate-specific receiver operating characteristic (ROC) curves are often used to evaluate the classification accuracy of a medical diagnostic test or a biomarker, when the accuracy of the test is associated with certain covariates. In many large-scale screening tests, the gold standard is subject to missingness due...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2011.01562.x

    authors: Liu D,Zhou XH

    更新日期:2011-09-01 00:00:00

  • On identifiability in capture-recapture models.

    abstract::We study the issue of identifiability of mixture models in the context of capture-recapture abundance estimation for closed populations. Such models are used to take account of individual heterogeneity in capture probabilities, but their validity was recently questioned by Link (2003, Biometrics 59, 1123-1130) on the ...

    journal_title:Biometrics

    pub_type: 评论,杂志文章

    doi:10.1111/j.1541-0420.2006.00637_1.x

    authors: Holzmann H,Munk A,Zucchini W

    更新日期:2006-09-01 00:00:00

  • Bayesian models for multivariate current status data with informative censoring.

    abstract::Multivariate current status data, consist of indicators of whether each of several events occur by the time of a single examination. Our interest focuses on inferences about the joint distribution of the event times. Conventional methods for analysis of multiple event-time data cannot be used because all of the event ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2002.00079.x

    authors: Dunson DB,Dinse GE

    更新日期:2002-03-01 00:00:00

  • Estimating the size of closed populations using inverse multiple-recapture sampling.

    abstract::A log-linear model for estimating the size of a closed population is defined for inverse multiple-recapture sampling with dependent samples. Efficient estimators of the log-linear model parameters and the population size are obtained by the method of minimum chi-square. A chi-square test of the general linear hypothes...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Bonett DG,Woodward JA,Bentler PM

    更新日期:1987-12-01 00:00:00

  • Stability of population growth determined by 2 X 2 Leslie matrix with density-dependent elements.

    abstract::The matrix considered contains four elements, each a function of total number. A special case for which the matrix may be appropriate is when the population may be divided into juveniles and adults, and the survival rates and fecundity are the same for all members of each group. This is true, at least approximatley, f...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Cooke D,Leon JA

    更新日期:1976-06-01 00:00:00

  • The use of score tests for inference on variance components.

    abstract::Whenever inference for variance components is required, the choice between one-sided and two-sided tests is crucial. This choice is usually driven by whether or not negative variance components are permitted. For two-sided tests, classical inferential procedures can be followed, based on likelihood ratios, score stati...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/1541-0420.00032

    authors: Verbeke G,Molenberghs G

    更新日期:2003-06-01 00:00:00

  • Multilevel functional clustering analysis.

    abstract::In this article, we investigate clustering methods for multilevel functional data, which consist of repeated random functions observed for a large number of units (e.g., genes) at multiple subunits (e.g., bacteria types). To describe the within- and between variability induced by the hierarchical structure in the data...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2011.01714.x

    authors: Serban N,Jiang H

    更新日期:2012-09-01 00:00:00

  • Connecting the latent multinomial.

    abstract::Link et al. (2010, Biometrics 66, 178-185) define a general framework for analyzing capture-recapture data with potential misidentifications. In this framework, the observed vector of counts, y, is considered as a linear function of a vector of latent counts, x, such that y=Ax, with x assumed to follow a multinomial d...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12333

    authors: Schofield MR,Bonner SJ

    更新日期:2015-12-01 00:00:00

  • Statistical analysis of unlabeled point sets: comparing molecules in chemoinformatics.

    abstract::We consider Bayesian methodology for comparing two or more unlabeled point sets. Application of the technique to a set of steroid molecules illustrates its potential utility involving the comparison of molecules in chemoinformatics and bioinformatics. We initially match a pair of molecules, where one molecule is regar...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2006.00622.x

    authors: Dryden IL,Hirst JD,Melville JL

    更新日期:2007-03-01 00:00:00

  • Capture-recapture estimation using finite mixtures of arbitrary dimension.

    abstract::Reversible jump Markov chain Monte Carlo (RJMCMC) methods are used to fit Bayesian capture-recapture models incorporating heterogeneity in individuals and samples. Heterogeneity in capture probabilities comes from finite mixtures and/or fixed sample effects allowing for interactions. Estimation by RJMCMC allows automa...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2009.01289.x

    authors: Arnold R,Hayakawa Y,Yip P

    更新日期:2010-06-01 00:00:00

  • A hypothesis test for the end of a common source outbreak.

    abstract::The objective of this article is to develop a hypothesis-testing procedure to determine whether a common source outbreak has ended. We consider the case when neither the calendar date of exposure to the pathogen nor the exact incubation period distribution is known. The hypothesis-testing procedure is based on the spa...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2005.00421.x

    authors: Brookmeyer R,You X

    更新日期:2006-03-01 00:00:00

  • Maximum likelihood estimation for incomplete repeated-measures experiments under an ARMA covariance structure.

    abstract::A stochastic model is presented for the analysis of incomplete repeated-measures experiments. The general linear model is used to relate the response measures to other variables which are thought to account for inherent variation; an autoregressive moving average (ARMA) time series representation is used to model dist...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Rochon J,Helms RW

    更新日期:1989-03-01 00:00:00

  • Attributable effects in case2-studies.

    abstract::In an effort to determine whether a particular treatment causes a particular outcome event, data are obtained from a database system that records events when they occur, and for such events, the system records exposure to the treatment. That is, the system records information about cases. The system provides no inform...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341X.2005.030920.x

    authors: Rosenbaum PR

    更新日期:2005-03-01 00:00:00

  • Bayesian semiparametric models for survival data with a cure fraction.

    abstract::We propose methods for Bayesian inference for a new class of semiparametric survival models with a cure fraction. Specifically, we propose a semiparametric cure rate model with a smoothing parameter that controls the degree of parametricity in the right tail of the survival distribution. We show that such a parameter ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2001.00383.x

    authors: Ibrahim JG,Chen MH,Sinha D

    更新日期:2001-06-01 00:00:00

  • Statistical monitoring of the hand, foot and mouth disease in China.

    abstract::In a period starting around 2007, the Hand, Foot, and Mouth Disease (HFMD) became wide-spreading in China, and the Chinese public health was seriously threatened. To prevent the outbreak of infectious diseases like HFMD, effective disease surveillance systems would be especially helpful to give signals of disease outb...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12301

    authors: Zhang J,Kang Y,Yang Y,Qiu P

    更新日期:2015-09-01 00:00:00

  • A simple method for the analysis of clustered binary data.

    abstract::A simple method for comparing independent groups of clustered binary data with group-specific covariates is proposed. It is based on the concepts of design effect and effective sample size widely used in sample surveys, and assumes no specific models for the intracluster correlations. It can be implemented using any s...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Rao JN,Scott AJ

    更新日期:1992-06-01 00:00:00

  • One-sided sequential stopping boundaries for clinical trials: a decision-theoretic approach.

    abstract::We address one-sided stopping rules for clinical trials, or more generally, drug development programs, from a decision-theoretic point of view. If efficacy results are sufficiently negative then the trial will be stopped. But regardless of how positive the efficacy results are, the trial will continue in order to demo...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Berry DA,Ho CH

    更新日期:1988-03-01 00:00:00

  • Breeding return times and abundance in capture-recapture models.

    abstract::For many long-lived animal species, individuals do not breed every year, and are often not accessible during non-breeding periods. Individuals exhibit site fidelity if they return to the same breeding colony or spawning ground when they breed. If capture and recapture is only possible at the breeding site, temporary e...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12094

    authors: Pledger S,Baker E,Scribner K

    更新日期:2013-12-01 00:00:00

  • On Bayesian methods for bioequivalence.

    abstract::Bayesian methods are presented for assessing bioequivalence for studies in which a new formulation and a standard are administered simultaneously, and for Latin square designs which compare two or more new formulations to a standard. Two examples illustrate the application of the methods. ...

    journal_title:Biometrics

    pub_type: 临床试验,杂志文章

    doi:

    authors: Selwyn MR,Hall NR

    更新日期:1984-12-01 00:00:00

  • Improved dynamic predictions from joint models of longitudinal and survival data with time-varying effects using P-splines.

    abstract::In the field of cardio-thoracic surgery, valve function is monitored over time after surgery. The motivation for our research comes from a study which includes patients who received a human tissue valve in the aortic position. These patients are followed prospectively over time by standardized echocardiographic assess...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/biom.12814

    authors: Andrinopoulou ER,Eilers PHC,Takkenberg JJM,Rizopoulos D

    更新日期:2018-06-01 00:00:00

  • A latent model to detect multiple clusters of varying sizes.

    abstract::This article develops a latent model and likelihood-based inference to detect temporal clustering of events. The model mimics typical processes generating the observed data. We apply model selection techniques to determine the number of clusters, and develop likelihood inference and a Monte Carlo expectation-maximizat...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2009.01197.x

    authors: Xie M,Sun Q,Naus J

    更新日期:2009-12-01 00:00:00

  • Adaptive decision making in a lymphocyte infusion trial.

    abstract::We describe an adaptive Bayesian design for a clinical trial of an experimental treatment for patients with hematologic malignancies who initially received an allogeneic bone marrow transplant but subsequently suffered a disease recurrence. Treatment consists of up to two courses of targeted immunotherapy followed by ...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2002.00560.x

    authors: Thall PF,Inoue LY,Martin TG

    更新日期:2002-09-01 00:00:00

  • Incorporating marginal covariate information in a nonparametric regression model for a sample of R x C tables.

    abstract:SUMMARY:Nonparametric regression models are proposed in the framework of ecological inference for exploratory modeling of disease prevalence rates adjusted for variables, such as age, ethnicity/race, and socio-economic status. Ecological inference is needed when a response variable and covariate are not available at th...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.1541-0420.2008.00997.x

    authors: Staniswalis JG

    更新日期:2008-12-01 00:00:00

  • Modification of the Greenwood formula for correlated response times.

    abstract::Life-table methodology for interval-censored survival times is used to estimate marginal survival probabilities from data consisting of independent cohorts of correlated responses. We restrict our attention to situations where response times within cohorts are exchangeable and the marginal survival distributions are t...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Kang SS,Koehler KJ

    更新日期:1997-09-01 00:00:00

  • A note on the conditional approach to interval estimation in the calibration problem.

    abstract::In the calibration problem, the need to construct a confidence interval to estimate the unknown chi 0 arises when the null hypothesis of zero slope is rejected. Otherwise, the resulting confidence interval will be infinite to reflect the fact that the slope of the regression line may be zero. Under the condition of re...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Lee JJ

    更新日期:1991-12-01 00:00:00

  • Accurate critical constants for the one-sided approximate likelihood ratio test of a normal mean vector when the covariance matrix is estimated.

    abstract::Tang, Gnecco, and Geller (1989, Biometrika 76, 577-583) proposed an approximate likelihood ratio (ALR) test of the null hypothesis that a normal mean vector equals a null vector against the alternative that all of its components are nonnegative with at least one strictly positive. This test is useful for comparing a t...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.2002.00650.x

    authors: Tamhane AC,Logan BR

    更新日期:2002-09-01 00:00:00

  • Optimal designs when the variance is a function of the mean.

    abstract::We develop locally D-optimal designs for nonlinear models when the variance of the response is a function of its mean. Using the two-parameter Michaelis-Menten model as an example, we show that the optimal design depends on both the type of heteroscedasticity and the magnitude of the variation. In addition, our result...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:10.1111/j.0006-341x.1999.00925.x

    authors: Dette H,Wong WK

    更新日期:1999-09-01 00:00:00

  • On hierarchical Bayes procedures for predicting simple exponential survival.

    abstract::The situation considered is the prediction of a future observation from a simple exponential survival distribution in a hierarchical Bayes context. It is shown that when the hyperparameters need to be estimated from the data, a sample reuse approach is superior to maximum likelihood and method of moments estimation pr...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Geisser S

    更新日期:1990-03-01 00:00:00

  • Fitting a multiplicative incidence model to age- and time-specific prevalence data.

    abstract::We discuss the assessment of age- and time-specific disease incidence using prevalence data. A method is described for conveniently fitting a discrete-time multiplicative model, subject to positivity constraints, using the EM-algorithm. Together with smoothing, it allows essentially nonparametric assessment of inciden...

    journal_title:Biometrics

    pub_type: 杂志文章

    doi:

    authors: Marschner IC

    更新日期:1996-06-01 00:00:00