Genetic diversity and differentiation of Chinese domestic buffalo based on 30 microsatellite markers.

Abstract:

:To determine genetic diversity and evolutionary relationships among Chinese buffalo populations, 18 indigenous swamp buffalo populations and two introduced river buffalo breeds were genotyped for 30 microsatellite loci. The mean number of alleles across the 30 loci was 8.13, and the expected heterozygosity ranged from 0.517 (Yanjin) to 0.609 (Dehong). Although there was abundant genetic variation, genetic differentiation between Chinese buffalo populations was low, with only 2.8% of the total genetic variance among populations. The genetic differentiation pattern and genetic relationships among Chinese buffalo populations were consistent with their geographic distribution. The Dehong population was discerned as a distinct indigenous population, but suffered genetic admixture with river buffalo. The remaining populations were divided into four major clusters, i.e. the Upper and Middle Reaches of Yangtze Valley cluster (Guizhou, Guizhoubai, Yanjin, Fuling, Enshi and Jianghan), the Lower Reaches of Yangtze Valley cluster (Haizi, Shanqu and Dongliu), the South China cluster (Fuan and Xinfeng) and the Southwest China cluster (Xinglong, Xilin, Diandongnan and Dechang).

journal_name

Anim Genet

journal_title

Animal genetics

authors

Zhang Y,Sun D,Yu Y,Zhang Y

doi

10.1111/j.1365-2052.2007.01648.x

subject

Has Abstract

pub_date

2007-12-01 00:00:00

pages

569-75

issue

6

eissn

0268-9146

issn

1365-2052

pii

AGE1648

journal_volume

38

pub_type

杂志文章
  • Characterization of a deletion in the Hsp70 cluster in the bovine reference genome.

    abstract::The 70 kilodalton heat shock proteins (Hsp70) are highly conserved molecular chaperones which have a crucial role in the stress response of the cell. In mammals, the Hsp70 proteins are encoded by a cluster of three genes: HSPA1A, HSPA1B and HSPA1L. In bovines, this cluster is located on chromosome 23 downstream of the...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12561

    authors: Suqueli García MF,Castellote MA,Feingold SE,Corva PM

    更新日期:2017-08-01 00:00:00

  • Additional studies of sheep haemopexin: genetic control, frequencies and postnatal development.

    abstract::This study presents evidence that sheep haemopexin phenotypes are genetically controlled by three alleles, HpxA, HpxB1 and HpxB2, of a single autosomal locus. Frequencies of two alleles, HpxA and HpxB (HpxB encompasses two isoalleles, HpxB1 and HpxB2), were studied in eight sheep breeds in Czechoslovakia. The frequenc...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1989.tb00856.x

    authors: Stratil A,Bobák P,Margetín M,Glasnák V

    更新日期:1989-01-01 00:00:00

  • Four new alleles at the mannose-6-phosphate isomerase locus in rabbit.

    abstract::Four new alleles at the rabbit (Oryctolagus cuniculus) mannose-6-phosphate isomerase (E.C. 5.3.1.8, MPI) locus are proposed to account for phenotypes observed after starch gel electrophoresis and enzymatic staining of red cell lysates and tissues. Population data from various wild and domestic rabbit populations are p...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1995.tb02617.x

    authors: Vieira J,Ferrand N

    更新日期:1995-02-01 00:00:00

  • An advanced sheep (Ovis aries, 2n = 54) cytogenetic map and assignment of 88 new autosomal loci by fluorescence in situ hybridization and R-banding.

    abstract::Presented herein is an updated sheep cytogenetic map that contains 452 loci (291 type I and 161 type II) assigned to specific chromosome bands or regions on standard R-banded ideograms. This map, which significantly extends our knowledge of the physical organization of the ovine genome, includes new assignments for 88...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2007.01598.x

    authors: Di Meo GP,Perucatti A,Floriot S,Hayes H,Schibler L,Rullo R,Incarnato D,Ferretti L,Cockett N,Cribiu E,Williams JL,Eggen A,Iannuzzi L

    更新日期:2007-06-01 00:00:00

  • An integrated comparative map of the porcine X chromosome.

    abstract::The objectives of this study were to assign both microsatellite and gene-based markers on porcine chromosome X to two radiation hybrid (RH) panels and to develop a more extensive integrated map of SSC-X. Thirty-five microsatellite and 20 gene-based markers were assigned to T43RH, and 16 previously unreported microsate...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.2002.00878.x

    authors: McCoard SA,Fahrenkrug SC,Alexander LJ,Freking BA,Rohrer GA,Wise TH,Ford JJ

    更新日期:2002-06-01 00:00:00

  • Comparing two commercial domestic dog (Canis familiaris) STR genotyping kits for forensic identity calculations in a mixed-breed dog population sample.

    abstract::Almost half of all US households own a dog (Canis familiaris). Though these household pets can attack humans and other animals, they are also frequently victims of cruelty, neglect and theft. In human-oriented investigations, the tendency of domestic dogs to leave behind physical traces (such as hair) can serve as val...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12758

    authors: Kanthaswamy S,Oldt RF,Montes M,Falak A

    更新日期:2019-02-01 00:00:00

  • Mapping of calpastatin and three microsatellites to porcine chromosome 2q2.1-q2.4.

    abstract::Three polymorphisms were identified in a 1.6-kb fragment of the porcine calpastatin (CAST) gene and these polymorphisms were used for genetic linkage mapping. Linkage analysis revealed significant linkage of CAST to five microsatellites previously mapped to porcine chromosome 2; these microsatellites were S0010, S0226...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.1998.00319.x

    authors: Ernst CW,Robic A,Yerle M,Wang L,Rothschild MF

    更新日期:1998-06-01 00:00:00

  • Polymorphic CAC/T repetitive sequences in the pig genome 1.

    abstract::Three genomic clones were isolated from a size-selected pig DNA library by hybridization with a DNA-fingerprint probe. Analysis at the sequence level revealed that all three clones contain interrupted stretches of triplet repeats mainly composed of CAC and CAT triplets. Evaluation of the corresponding loci for polymor...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1995.tb02667.x

    authors: Coppieters W,Van de Weghe A,Depicker A,Coppieters J,Peelman L,Van Zeveren A,Bouquet Y

    更新日期:1995-10-01 00:00:00

  • Genetic evidence for the introgression of Western NR6A1 haplotype into Chinese Licha breed associated with increased vertebral number.

    abstract::There is evidence that NR6A1 is a strong candidate for being a causal gene underlying vertebral number in pigs. The Licha Black is one of the leanest Chinese indigenous pig breeds, having an average vertebral number of 21.5. The introgression of Western germplasm into Licha Black, resulting in increased vertebral numb...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2008.01820.x

    authors: Yang G,Ren J,Zhang Z,Huang L

    更新日期:2009-04-01 00:00:00

  • Genetic diversity within chicken populations from different continents and management histories.

    abstract::Intra-population variation was assessed in 1970 chickens from 64 populations using 29 autosomal microsatellites. On average, 95% of the loci were polymorphic across populations. In 1456 (c. 83%) of the 1763 combinations of populations and polymorphic loci, no departure from Hardy-Weinberg equilibrium was observed. On ...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2007.01650.x

    authors: Granevitze Z,Hillel J,Chen GH,Cuc NT,Feldman M,Eding H,Weigend S

    更新日期:2007-12-01 00:00:00

  • The genetic structure of Spanish Celtic horse breeds inferred from microsatellite data.

    abstract::Partition of the genetic variability, genetic structure and relationships among seven Spanish Celtic horse breeds were studied using PCR amplification of 13 microsatellites on 481 random individuals. In addition, 60 thoroughbred horses were included. The average observed heterozygosity and the mean number of alleles w...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.2000.00591.x

    authors: Cañon J,Checa ML,Carleos C,Vega-Pla JL,Vallejo M,Dunner S

    更新日期:2000-02-01 00:00:00

  • Linkage disequilibrium over short physical distances measured in sheep using a high-density SNP chip.

    abstract::The extent of linkage disequilibrium (LD) between genetic loci has implications for both association studies and the accuracy of genomic prediction. To characterise the persistence of LD in diverse sheep breeds, two SNP genotyping platforms were used. First, existing SNP genotypes from 63 breeds obtained using the ovi...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12197

    authors: Kijas JW,Porto-Neto L,Dominik S,Reverter A,Bunch R,McCulloch R,Hayes BJ,Brauning R,McEwan J,International Sheep Genomics Consortium.

    更新日期:2014-10-01 00:00:00

  • Estimations of the efficacy and reliability of paternity assignments from DNA microsatellite analysis of multiple-sire matings.

    abstract::It is important for bovine DNA testing laboratories to provide the cattle industry with accurate estimates of the efficacy and reliability of DNA tests offered so that end users of this technology can adequately assess the cost-benefits of testing. To address these issues for bovine paternity testing, paternity exclus...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.1999.00511.x

    authors: Vankan DM,Faddy MJ

    更新日期:1999-10-01 00:00:00

  • FTO gene variants are associated with growth and carcass traits in cattle.

    abstract::An important aim in animal breeding is the improvement of growth and meat quality traits. Previous studies have demonstrated that genetic variants in the fat mass and obesity associated (FTO) gene have a relatively large effect on human obesity as well as on body composition in rodents and, more recently, in livestock...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12403

    authors: Jevsinek Skok D,Kunej T,Kovac M,Malovrh S,Potocnik K,Petric N,Zgur S,Dovc P,Horvat S

    更新日期:2016-04-01 00:00:00

  • Mitochondrial DNA variation of domestic sheep (Ovis aries) in Kenya.

    abstract::The history of domestic sheep (Ovis aries) in Africa remains largely unknown. After being first introduced from the Near East, sheep gradually spread through the African continent with pastoral societies. The eastern part of Africa was important either for the first diffusion of sheep southward or for putative seconda...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12412

    authors: Resende A,Gonçalves J,Muigai AW,Pereira F

    更新日期:2016-06-01 00:00:00

  • Chromosomal assignment of chicken clone contigs by extending the consensus linkage map.

    abstract::The bacterial artificial clone-based physical map for chicken plays an important role in the integration of the consensus linkage map and the whole-genome shotgun sequence. It also provides a valuable resource for clone selection within applications such as fluorescent in situ hybridization and positional cloning. How...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2005.01289.x

    authors: Aerts JA,Veenendaal T,van der Poel JJ,Crooijmans RP,Groenen MA

    更新日期:2005-06-01 00:00:00

  • Direct sequencing and bidirectional allele specific polymerase chain reaction of the bovine beta-casein B variant.

    abstract::We have used the polymerase chain reaction (PCR) to amplify exon VII of the bovine beta-casein gene. The mutations responsible for the B variant were identified by direct sequencing of the amplification products. A bidirectional allele-specific PCR method (BAS-PCR) has been developed using oligonucleotides overlapping...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1992.tb00180.x

    authors: Damiani G,Pilla F,Leone P,Cacciò S

    更新日期:1992-01-01 00:00:00

  • Sequence analysis of MHC class I alpha 2 domain exon variants in one diploid and two haploid Atlantic salmon pedigrees.

    abstract::Genetic diversity in the second domain exon of Atlantic salmon (Salmo salar) major histocompatibility complex (Mhc) class I was investigated in two dams and nine of their haploid offspring by means of polymerase chain reaction (PCR) and DNA sequence analysis. A similar study was also performed on nine diploid offsprin...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1997.00183.x

    authors: Grimholt U,Olsaker I,Lingaas F,Lie O

    更新日期:1997-12-01 00:00:00

  • Comparative porcine gene mapping relative to human chromosomes 9, 10, 20 and 22.

    abstract::Comparative anchor tagged sequence (CATS) consensus primers from loci mapped to human chromosomes 9, 10, 20, and 22 have been used to amplify homologous loci in pigs. Of 53, CATS primers tested in pigs, only 23 yielded products homologous to the human locus (42% success). Ten loci were physically mapped (43% success r...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.2001.00787.x

    authors: Lee JH,Zhang W,Moran C

    更新日期:2001-10-01 00:00:00

  • Centromere mapping in the Pacific abalone (Haliotis discus hannai) through half-tetrad analysis in gynogenetic diploid families.

    abstract::Centromere mapping is an essential prerequisite for our understanding of the composition and structure of genomes. For centromere mapping, in two meiogynogenetic families of the Pacific abalone (Haliotis discus hannai), we screened 97 microsatellite markers that cover all linkage groups from a currently available abal...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2011.02254.x

    authors: Nie H,Li Q,Kong L

    更新日期:2012-06-01 00:00:00

  • Phylogenetic analysis of Sicilian goats reveals a new mtDNA lineage.

    abstract::The mitochondrial hypervariable region 1 (HVR1) sequence of 67 goats belonging to the Girgentana, Maltese and Derivata di Siria breeds was partially sequenced in order to present the first phylogenetic characterization of Sicilian goat breeds. These sequences were compared with published sequences of Indian and Pakist...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2006.01451.x

    authors: Sardina MT,Ballester M,Marmi J,Finocchiaro R,van Kaam JB,Portolano B,Folch JM

    更新日期:2006-08-01 00:00:00

  • Mitochondrial PEPCK: a highly polymorphic gene with alleles co-selected with Marek's disease resistance in chickens.

    abstract::The gene coding for the mitochondrial phosphoenolpyruvate carboxykinase (PEPCK-M), a pivotal component in gluconeogenesis from lactate via the Cori cycle, was highly polymorphic in strains of egg-type chickens (White Leghorn) of different origins. Based on MspI restriction fragment polymorphisms a total of seven allel...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.1998.295362.x

    authors: Li S,Zadworny D,Aggrey SE,Kuhnlein U

    更新日期:1998-10-01 00:00:00

  • To pace or not to pace: a pilot study of four- and five-gaited Icelandic horses homozygous for the DMRT3 'Gait Keeper' mutation.

    abstract::The Icelandic horse is a breed known mainly for its ability to perform the ambling four-beat gait 'tölt' and the lateral two-beat gait pace. The natural ability of the breed to perform these alternative gaits is highly desired by breeders. Therefore, the discovery that a nonsense mutation (C>A) in the DMRT3 gene was t...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12610

    authors: Jäderkvist Fegraeus K,Hirschberg I,Árnason T,Andersson L,Velie BD,Andersson LS,Lindgren G

    更新日期:2017-12-01 00:00:00

  • Identification of a premature stop codon in the melanocyte-stimulating hormone receptor gene (MC1R) in Labrador and Golden retrievers with yellow coat colour.

    abstract::We have examined whether black/yellow coat colour in Labrador retrievers is controlled by allelic variants at the extension locus. As the gene encoding the melanocyte-stimulating hormone receptor (MC1R) has been shown to correspond to the extension locus in several species, we have determined the genomic MC1R sequence...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.2000.00639.x

    authors: Everts RE,Rothuizen J,van Oost BA

    更新日期:2000-06-01 00:00:00

  • Resistance to malignant catarrhal fever in American bison (Bison bison) is associated with MHC class IIa polymorphisms.

    abstract::The Rhadinovirus ovine herpesvirus-2 (OvHV-2) is the most common causative agent of malignant catarrhal fever (MCF) in clinically susceptible ruminants including cattle and bison. American bison (Bison bison) are highly susceptible to clinical MCF. Nevertheless, approximately 20% of bison on ranches or in feedlots bec...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2007.01575.x

    authors: Traul DL,Li H,Dasgupta N,O'Toole D,Eldridge JA,Besser TE,Davies CJ

    更新日期:2007-04-01 00:00:00

  • Genome-wide association study for body weight in cattle populations from Siberia.

    abstract::Body weight is a complex trait in cattle associated with commonly used commercial breeding measurements related to growth. Although many quantitative trait loci (QTL) for body weight have been identified in cattle so far, searching for genetic determinants in different breeds or environments is promising. Therefore, w...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12786

    authors: Igoshin AV,Yudin NS,Belonogova NM,Larkin DM

    更新日期:2019-06-01 00:00:00

  • Anti-leucocyte antibodies and embryonic mortality in embryo transferred cows.

    abstract::Cows carrying unrelated transferred embryos (ET) produced anti-leucocyte serum antibodies (aLA) more often than cows carrying their own embryos. Cows carrying the ET showed a higher frequency of cytotoxic reactions against leucocytes from 40-60 randomly chosen cows than individuals carrying their own embryos. The perc...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1991.tb00674.x

    authors: Matousek J,Ríha J

    更新日期:1991-01-01 00:00:00

  • Bovine monoclonal alloantibodies to blood group antigens prepared by murine x bovine or (murine x bovine) x bovine interspecies fusions.

    abstract::In order to obtain monoclonal alloantibodies against bovine blood group antigens, lymph node cells from calves immunized with bovine red blood cells (RBC) were fused with either murine NSO/1 myeloma cells or a HAT sensitive murine x bovine heterohybridoma cell line. Both fusion partners resulted in heterohybridoma cel...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:

    authors: Hønberg LS,Larsen B

    更新日期:1992-01-01 00:00:00

  • No detectable association of the ESR PvuII mutation with sow productivity in a Meishan x Large White F2 population.

    abstract::The polymorphism at the PvuII recognition site in the ESR gene showed no statistically significant association with sow productivity traits in a Meishan x Large White F2 population. Estimates of the effect on litter size were, however, in the opposite direction and statistically different from previously published est...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.2002.00889.x

    authors: Gibson JP,Jiang ZH,Robinson JA,Archibald AL,Haley CS

    更新日期:2002-12-01 00:00:00

  • Genome-wide association study identifies markers associated with carcass and meat quality traits in Italian Large White pigs.

    abstract::A GWAS was performed using the genotypes obtained by PorcineSNP60 v2 BeadChip and 11 phenotypic traits (carcass lean meat percentage; backfat thickness; Longissimus thoracis muscle thickness; lightness; backfat thickness measured with caliper at the midline; meat pH measured at about 1 h post mortem and 24 h post mort...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.13013

    authors: Fabbri MC,Zappaterra M,Davoli R,Zambonelli P

    更新日期:2020-12-01 00:00:00