Thermodynamic electron equivalents model for bacterial yield prediction: modifications and comparative evaluations.

Abstract:

:Modifications are made to an earlier thermodynamic model (TEEM1) for prediction of maximum microbial yields from aerobic and anaerobic as well as heterotrophic and autotrophic growth. The revised model (TEEM2) corrects for lower yields found with aerobic oxidations of organic compounds where an oxygenase is involved and with growth on single-carbon (C1) compounds. TEEM1 and TEEM2 are based on energy release and consumption as determined from the reduction potential or Gibbs free energy of (1/2)-reaction reduction equations together with losses of energy during energy transfer. Energy transfer efficiency is a key parameter needed to make predictions with TEEM2, and was determined through evaluations with extensive data sets on aerobic heterotrophic yield available in the literature. For compounds following normal catabolic pathways, the best-fit value for energy transfer efficiency was 0.37, which permitted accurate predictions of growth with a precision of 15%-20% as determined by standard deviation. Using the same energy transfer efficiency, a similar precision, but somewhat less accuracy was found for organic compounds where oxidation involves an oxygenase (estimates 8% too high) and for C1 compounds (estimates 17% too high). In spite of the somewhat lower accuracy, the TEEM2 modifications resulted in improved predictions over TEEM1 and the comparison models.

journal_name

Biotechnol Bioeng

authors

McCarty PL

doi

10.1002/bit.21250

subject

Has Abstract

pub_date

2007-06-01 00:00:00

pages

377-88

issue

2

eissn

0006-3592

issn

1097-0290

journal_volume

97

pub_type

杂志文章
  • Measuring enzyme motility in organic media using novel H-D exchange methodology.

    abstract::A novel deuterium ((2)H) NMR technique as developed for measuring the total number of deuterons exchanged by lyophilised protein samples following hydrogen-deuterium (H-D) exchange. Using this methodology differences in the H-D exchange behaviour of the proteolytic enzyme subtilisin Carlsberg hydrated either in air or...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:

    authors: Hutcheon GA,Parker MC,Moore BD

    更新日期:2000-11-05 00:00:00

  • Activation of microcarrier-attached lymphocytes in microgravity.

    abstract::A technology has been developed to achieve optimal attachment of adhesion-independent lymphocytes to microcarrier beads. The activation of T-lymphocytes by concanavalin A was tested under microgravity conditions in an experiment carried out in space during the first Spacelab Life Science Mission. Activation, measure...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260400815

    authors: Bechler B,Cogoli A,Cogoli-Greuter M,Müller O,Hunzinger E,Criswell SB

    更新日期:1992-10-20 00:00:00

  • New tools for mass isotopomer data evaluation in (13)C flux analysis: mass isotope correction, data consistency checking, and precursor relationships.

    abstract::13C metabolic flux analysis (MFA) is based on carbon-labeling experiments where a specifically (13)C labeled substrate is fed. The labeled carbon atoms distribute over the metabolic network and the label enrichment of certain metabolic pools is measured by using different methods. Recently, MS methods have been dramat...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.10909

    authors: Wahl SA,Dauner M,Wiechert W

    更新日期:2004-02-05 00:00:00

  • Characterization of human islet-like structures generated from pancreatic precursor cells in culture.

    abstract::This study addresses the characterization of human islet-like structures generated from a newly discovered sparse population of precursor cells (Petropavlovskaia and Rosenberg, 2002) in the human pancreas. These cells may be progenitor cells capable of producing pancreatic cells suitable for the treatment of type 1 di...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20801

    authors: Bodnar CA,Sen A,Kallos MS,Behie LA,Petropavlovskaia M,Rosenberg L

    更新日期:2006-04-05 00:00:00

  • A comparison of mathematical model predictions to experimental measurements for growth and recombinant protein production in induced cultures of Escherichia coli.

    abstract::Recombinant cell growth and protein synthesis by a recombinant Escherichia coli under various inducing conditions are compared to the predictions of a mathematical model. The mathematical model used was a combination of two literature models: (1) an empirical kinetic model for recombinant growth and product formation ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260360204

    authors: Betenbaugh MJ,Dhurjati P

    更新日期:1990-06-20 00:00:00

  • Application of continuous zone electrophoresis to preparative separation of proteins.

    abstract::A comprehensive study of the application of continuous zone electrophoresis to preparative separation of proteins in free solution is presented. First, the influence of electric field strength, buffer residence time in the chamber, sample flow rate, and sample concentration on separation resolution and throughput were...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260420707

    authors: Nath S,Schütte H,Hustedt H,Deckwer WD

    更新日期:1993-09-20 00:00:00

  • Escherichia coli "TatExpress" strains super-secrete human growth hormone into the bacterial periplasm by the Tat pathway.

    abstract::Numerous high-value proteins are secreted into the Escherichia coli periplasm by the General Secretory (Sec) pathway, but Sec-based production chassis cannot handle many potential target proteins. The Tat pathway offers a promising alternative because it transports fully folded proteins; however, yields have been too ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.26434

    authors: Browning DF,Richards KL,Peswani AR,Roobol J,Busby SJW,Robinson C

    更新日期:2017-12-01 00:00:00

  • Characterization of changes in PER.C6 cellular metabolism during growth and propagation of a replication-deficient adenovirus vector.

    abstract::PER.C6 cells were cultivated for propagation of a replication-defective adenovirus vector in serum-free suspension bioreactors. Cellular metabolism during cell growth and adenovirus propagation was fully characterized using on-line and off-line methods. The energy metabolism was found to accelerate transiently after a...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20455

    authors: Maranga L,Auniņs JG,Zhou W

    更新日期:2005-06-05 00:00:00

  • Bidirectional reaction steps in metabolic networks: II. Flux estimation and statistical analysis.

    abstract::Metabolic carbon labelling experiments enable a large amount of extracellular fluxes and intracellular carbon isotope enrichments to be measured. Since the relation between the measured quantities and the unknown intracellular metabolic fluxes is given by bilinear balance equations, flux determination from this data s...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0290(19970705)55:1<118::AID-BIT

    authors: Wiechert W,Siefke C,de Graaf AA,Marx A

    更新日期:1997-07-05 00:00:00

  • Active-site titration of serine proteases in organic solvents.

    abstract::Calculation of kinetic constants of an enzymatic reaction in organic solvents requires knowledge of the functional active-site concentration in organic solvents, and this can be significantly different than that in water. An experimental method for active-site titration of serine proteases in organic media has been de...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0290(19960505)50:3<329::AID-BIT

    authors: Wangikar PP,Carmichael D,Clark DS,Dordick JS

    更新日期:1996-05-05 00:00:00

  • A mechanistic model of the aerobic growth of Saccharomyces cerevisiae.

    abstract::A two-stage deterministic model of the growth of Saccharomyces cerevisiae is presented. The cell cycle of this organism was used to suggest the basic model structure. The model represents the preparatory processes of substrate uptake and conversion separately from replication and division. The regulation of the fracti...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260190209

    authors: Bijkerk AH,Hall RJ

    更新日期:1977-02-01 00:00:00

  • Non-destructive label-free continuous monitoring of in vitro chondrogenesis via electrical conductivity and its anisotropy.

    abstract::Non-destructive label-free continuous monitoring of in vitro tissue culture is an unmet demand in tissue engineering. Noting that different compositions of cartilage lead to different electrical tissue properties, we propose a new method to measure the electrical conductivity and its anisotropy during in vitro chondro...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.25350

    authors: Oh TI,Kim C,Karki B,Son Y,Lee E,Woo EJ

    更新日期:2015-02-01 00:00:00

  • Impact of ligand density on the optimization of ion-exchange membrane chromatography for viral vector purification.

    abstract::The effect of ligand density on anion-exchange membrane chromatography (AEXmc) for the purification of recombinant baculoviruses (rBVs), potential viral vectors in clinical applications, is studied by surface plasmon resonance on customized AEX surfaces and gradient elution experiments on Sartobind D membrane prototyp...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.23058

    authors: Vicente T,Fáber R,Alves PM,Carrondo MJ,Mota JP

    更新日期:2011-06-01 00:00:00

  • Physiological responses of Saccharomyces cerevisiae to industrially relevant conditions: Slow growth, low pH, and high CO2 levels.

    abstract::Engineered strains of Saccharomyces cerevisiae are used for industrial production of succinic acid. Optimal process conditions for dicarboxylic-acid yield and recovery include slow growth, low pH, and high CO2 . To quantify and understand how these process parameters affect yeast physiology, this study investigates in...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.27210

    authors: Hakkaart X,Liu Y,Hulst M,El Masoudi A,Peuscher E,Pronk J,van Gulik W,Daran-Lapujade P

    更新日期:2020-03-01 00:00:00

  • Unified kinetic treatment for growth on dual nutrients.

    abstract::This paper presents a new formulation for the analysis of growth kinetics on multiple nutrients. The baseline for the theory is the concept that a noninteractive growth process occurs among perfectly substitutable nutrients if the locus of points of the substrate concentrations producing equal growth rate is linear. A...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260440203

    authors: Haas CN

    更新日期:1994-06-20 00:00:00

  • Cellulase immobilized on poly-L-glutamic acid.

    abstract::Cellulase (Cellulosin AC-8) was immobilized on poly-L-glutamic acid. This immobilized cellulase (IC) is water soluble in the neutral and alkaline solutions, where IC has the activity, while IC can be made insoluble by lowering the pH so that it can be recovered from the reaction mixture with its activity. The optimum ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260290203

    authors: Takeuchi T,Makino K

    更新日期:1987-02-01 00:00:00

  • Design of cellular porous biomaterials for wall shear stress criterion.

    abstract::The microfluidic environment provided by implanted prostheses has a decisive influence on the viability, proliferation and differentiation of cells. In bone tissue engineering, for instance, experiments have confirmed that a certain level of wall shear stress (WSS) is more advantageous to osteoblastic differentiation....

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.22842

    authors: Chen Y,Zhou S,Cadman J,Li Q

    更新日期:2010-11-01 00:00:00

  • Virus detection using filament-coupled antibodies.

    abstract::Two attractive features of ELISA are the specificity of antibody-antigen recognition and the sensitivity achieved by enzymatic amplification. This report describes the development of a non-enzymatic molecular recognition platform adaptable to point-of-care clinical settings and field detection of biohazardous material...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20537

    authors: Stone GP,Mernaugh R,Haselton FR

    更新日期:2005-09-20 00:00:00

  • Cellulase activity in commercial lipase preparations.

    abstract::Polymeric membranes are increasingly used as supports for the immobilization of enzymes in bioreactors. One of the more common reactor types employed in lipase-catalyzed hydrolysis of oils, contains modified cellulose as a membrane material. We found that this type of material is readily attacked by cellulase present ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260400714

    authors: Derksen JT,Boswinkel G,Cuperus FP

    更新日期:1992-10-05 00:00:00

  • Permeability of alginate microcapsules to secretory recombinant gene products.

    abstract::Non-autologous somatic gene therapy is an alternate approach to delivering recombinant gene products through implantation of a "universal" donor cell line engineered to produce a therapeutic gene product. The cells are immunologically isolated by enclosure in immunoprotective microcapsules fabricated from alginate-pol...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0290(19961120)52:4<472::AID-BIT

    authors: Awrey DE,Tse M,Hortelano G,Chang PL

    更新日期:1996-11-20 00:00:00

  • Oxygen transfer in animal cell culture medium.

    abstract::Both k(L)a and k(L) measurements were carried out by an unsteady state technique at impeller speeds ranging from 1.6 to 5.8 s(-1) in a mechanically agitated animal cell culture vessel of working volume 1.5 L. Checks were made that the time constant of the oxygen electrode was negligible compared to the time for aerati...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260300307

    authors: Lavery M,Nienow AW

    更新日期:1987-08-20 00:00:00

  • Cyclodextrins micrometric powders obtained by supercritical fluid processing.

    abstract::Supercritical fluid technology offers the possibility to produce dry powder formulations of biocompatible materials, overcoming the drawbacks of classical micronization processes. In this work, Supercritical Assisted Atomization (SAA) has been used to micronize alpha-cyclodextrin (alpha-CD) and hydroxypropyl-beta-cycl...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20895

    authors: Reverchon E,Antonacci A

    更新日期:2006-07-05 00:00:00

  • Water activity and substrate concentration effects on lipase activity.

    abstract::Catalytic activity of lipases (from Rhizopus arrhizus, Canadida rugosa, and Pseudomonas sp. was studied in organic media, mainly diisopropyl ether. The effect of water activity (a(w)) on V(max) showed that the enzyme activity in general increased with increasing amounts of water for the three enzymes. This was shown b...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0290(19970905)55:5<798::AID-BIT

    authors: Wehtje E,Adlercreutz P

    更新日期:1997-09-05 00:00:00

  • Diffusion of lactate and ammonium in relation to growth of Geotrichum candidum at the surface of solid media.

    abstract::Geotrichum candidum was cultivated at the surface of solid model media containing peptone to simulate the composition of Camembert cheese. The surface growth of G. candidum induced the diffusion of substrates from the core to the rind and the diffusion of produced metabolites from the rind to the core. In the range of...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20100

    authors: Aldarf M,Fourcade F,Amrane A,Prigent Y

    更新日期:2004-07-05 00:00:00

  • Removal of toluene in a vapor-phase bioreactor containing a strain of the dimorphic black yeast Exophiala lecanii-corni.

    abstract::Stricter regulations on volatile organic compounds and hazardous air pollutants have increased the demand for abatement technologies. Biofiltration, a process in which contaminated air is passed through a biologically active bed, can be used to remove these pollutants from air streams. In this study, a fungal vapor-ph...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.10066

    authors: Woertz JR,Kinney KA,McIntosh ND,Szaniszlo PJ

    更新日期:2001-12-05 00:00:00

  • Anaerobic digestion of cellulose fraction of domestic refuse by means of rumen microorganisms.

    abstract::The anaerobic digestion of a cellulose-enriched fraction of domestic refuse by means of rumen microorganisms in an "artificial rumen" digester was studied. Various combinations of solid and liquid retention times and loading rates were applied to establish optimum conditions for the acidogenic phase digestion of the r...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260320604

    authors: Gijzen HJ,Zwart KB,Teunissen MJ,Vogels GD

    更新日期:1988-09-05 00:00:00

  • A general kinetic model for biological nutrient removal activated sludge systems: model development.

    abstract::In this article, a kinetic model is developed and presented for biological nutrient removal (BNR) activated sludge (BNRAS) systems in general, but for external nitrification (EN) BNRAS (ENBNRAS) systems in particular. The model is based on the UCTPHO model, but includes some significant modifications, such as anoxic P...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.21508

    authors: Hu ZR,Wentzel MC,Ekama GA

    更新日期:2007-12-15 00:00:00

  • Effect of membrane morphology and operation on protein deposition in ultrafiltration membranes.

    abstract::Membrane morphology is compared to protein depostion under passive adsorption and ultrafiltration conditions. Solute resistance of protein deposits for membranes of varying roughness, structure, and permeability can vary dramatically with operating conditions. Using Brunauer-Emmett-Teller adsorption isotherm (BET), st...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260470208

    authors: Chen V,Kim KJ,Fane AG

    更新日期:1995-07-20 00:00:00

  • Maintaining data integrity in microarray data management.

    abstract::Gene expression microarrays are a relatively new technology, dating back just a few years, yet they have already become a very widely used tool in biology, and have evolved to a wide range of applications well beyond their original design intent. However, while the use of microarrays has expanded, and the issues of pe...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章,评审

    doi:10.1002/bit.10847

    authors: Grant GR,Manduchi E,Pizarro A,Stoeckert CJ Jr

    更新日期:2003-12-30 00:00:00

  • Enzymatic reaction kinetic: comparison in an organic solvent and in supercritical carbon dioxide.

    abstract::Myristic acid esterification has been performed by an immobilized lipase from Mucor Miehei both in n-hexane and in supercritical carbon dioxide (SCCO(2)). The enzyme is stable in SCCO(2) at 15 MPa and 323 K. The reaction rate is influenced by the concentration of water and by the reaction medium composition. A reactio...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260400218

    authors: Dumont T,Barth D,Corbier C,Branlant G,Perrut M

    更新日期:1992-06-20 00:00:00