Dissection of CDK4-binding and transactivation activities of p34(SEI-1) and comparison between functions of p34(SEI-1) and p16(INK4A).

Abstract:

:Recent studies showed that p34(SEI-1), also known as TRIP-Br1 or SEI-1, plays a dual role in the regulation of cell-cycle progression. It exhibits the transactivation activity and regulates a number of genes required for G1/S transition, while it also binds and activates cyclin-dependent kinase 4 (CDK4) independent of the inhibitory activity of p16. The goals of this paper are to further dissect the two roles and to compare the functions between SEI-1 and p16. (i) Yeast one-hybrid-based random mutagenesis was first used to identify a number of SEI-1 residues important for LexA-mediated transactivation, including residues L51, K52, L53, H54, L57, and L69 located within the heptad repeat (residues 30-88), a domain required for LexA-mediated transactivation, and two residues M219 and L228 at the C-terminal segment that contributes to transactivation through modulating the heptad repeat. (ii) The functional significance of these residues was further confirmed by site-directed mutagenesis. It was also shown that the heptad repeat-involving transactivation is distinct from the well-known acidic region-involving transactivation. (iii) Yeast two-hybrid-based binding analysis was made possible with the transactivation-negative SEI-1 mutants, and the results showed that some of such mutants retain full ability to bind and activate CDK4. (iv) Site-specific mutants of CDK4 were used to show that there are notable differences among SEI-1, p16, and cyclin D2 in binding to CDK4. (v) The expression levels of SEI-1 and p16 were compared in 32 tumor specimens of human squamous cell carcinomas of the head and neck. The results indicate that SEI-1 was consistently overexpressed, while p16 was consistently underexpressed. These results provide important information on the molecular mechanism of the functions of SEI-1 and on the comparison between SEI-1 and p16 at both molecular and cellular levels.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Li J,Muscarella P,Joo SH,Knobloch TJ,Melvin WS,Weghorst CM,Tsai MD

doi

10.1021/bi0504658

subject

Has Abstract

pub_date

2005-10-11 00:00:00

pages

13246-56

issue

40

eissn

0006-2960

issn

1520-4995

journal_volume

44

pub_type

杂志文章
  • A mechanism for reducing entropic cost of induced fit in protein--RNA recognition.

    abstract::Induced fit has been postulated to be an important component of ligand interactions with proteins, including protein-DNA interactions. We imagined that the entropic cost of induced fit might be highly dependent on the local protein sequence context around critical contact residues. To investigate this question, we ana...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960256a

    authors: Ribas de Pouplana L,Auld DS,Kim S,Schimmel P

    更新日期:1996-06-25 00:00:00

  • Thiophosphoryl guanine nucleotide analogues inhibit the (Na+,K+)-ATPase.

    abstract::The effects of several guanine nucleotide analogues on (Na+,K+)-ATPase activity of membranes isolated from several tissues were analyzed to determine if a G-protein might be involved in the hormonal regulation of the (Na+,K+)-ATPase. Submillimolar concentrations of GTP gamma S, but not GMPPNP, inhibit rat skeletal mus...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00241a014

    authors: McGill DL

    更新日期:1991-07-09 00:00:00

  • Mechanistic studies of two dioxygenases in the methionine salvage pathway of Klebsiella pneumoniae.

    abstract::Two dioxygenases (ARD and ARD') were cloned from Klebsiella pneumoniae that catalyze different oxidative decomposition reactions of an advanced aci-reductone intermediate, CH(3)SCH(2)CH(2)COCH(OH)=CH(OH) (I), in the methionine salvage pathway. The two enzymes are remarkable in that they have the same polypeptide seque...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010110y

    authors: Dai Y,Pochapsky TC,Abeles RH

    更新日期:2001-05-29 00:00:00

  • Electrostatic influence of QA reduction on the IR vibrational mode of the 10a-ester C==O of HA demonstrated by mutations at residues Glu L104 and Trp L100 in reaction centers from Rhodobacter sphaeroides.

    abstract::The light-induced QA-/QA FTIR difference spectrum of the photoreduction of the primary quinone (QA) in reaction centers (RCs) from Rhodobacter sphaeroides exhibits a set of complex differential bands between 1750 and 1715 cm(-1). Several of these features correspond in frequency to bands that bleach in the HA-/HA FTIR...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962871k

    authors: Breton J,Nabedryk E,Allen JP,Williams JC

    更新日期:1997-04-15 00:00:00

  • A-tract polarity dominate the curvature in flanking sequences.

    abstract::It is well-known, but little understood, that the nucleotide sequences between phased A(4-6)-tracts (at 10-11 bp intervals) have only a slight effect on overall curvature. To explore this phenomenon, we have examined the gel-migration properties of sequences containing both A-tracts as well as G-tracts (i.e., sequence...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi020662w

    authors: Merling A,Sagaydakova N,Haran TE

    更新日期:2003-05-06 00:00:00

  • Dual-wavelength ratiometric fluorescence measurements of membrane potential.

    abstract::This work shows that the voltage across membranes in two very different preparations, lipid vesicles in suspension and individual HeLa cells under a microscope, is linearly related to the ratio of fluorescence excited from the two wings of the absorption spectrum of a voltage-sensitive dye. The dye di-4-ANEPPS [1-(3-s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00437a003

    authors: Montana V,Farkas DL,Loew LM

    更新日期:1989-05-30 00:00:00

  • Electron paramagnetic resonance imaging of rat heart with nitroxide and polynitroxyl-albumin.

    abstract::Electron paramagnetic resonance (EPR) imaging utilizing stable nitroxyl radicals is a promising technique for measuring free radical distribution, metabolism, and tissue oxygenation in organs and tissues [Kuppusamy, P., Chzhan, M., Vij, K., Shteynbuk, M., Lefer, D. J., Giannella, E., & Zweier, J. L. (1994) Proc. Natl....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952857s

    authors: Kuppusamy P,Wang P,Zweier JL,Krishna MC,Mitchell JB,Ma L,Trimble CE,Hsia CJ

    更新日期:1996-06-04 00:00:00

  • Local-access model for proton transfer in bacteriorhodopsin.

    abstract::The accessibility of the retinal Schiff base in bacteriorhodopsin was studied in the D85N/D96N mutant where the proton acceptor and donor are absent. Protonation and deprotonation of the Schiff base after pH jump without illumination and in the photocycle of the unprotonated Schiff base were measured in the visible an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9728396

    authors: Brown LS,Dioumaev AK,Needleman R,Lanyi JK

    更新日期:1998-03-17 00:00:00

  • Kinetic mechanism of the inhibition of cathepsin G by alpha 1-antichymotrypsin and alpha 1-proteinase inhibitor.

    abstract::Uncontrolled proteolysis due to cathepsin G (cat G) may cause severe pathological disorders. Cat G is inhibited by alpha 1-antichymotrypsin (ACT) and alpha 1-proteinase inhibitor (alpha 1PI), two members of the serpin superfamily of proteins. To see whether these two inhibitors play a physiological proteolysis-prevent...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980223q

    authors: Duranton J,Adam C,Bieth JG

    更新日期:1998-08-11 00:00:00

  • DNA binding of methyl-CpG-binding protein MeCP2 in human MCF7 cells.

    abstract::MeCP2 has been identified as a chromatin-associated protein that recognizes MAR elements as well as methyl-CpGs. To characterize target sequences of MeCP2 in human cells, we employed two complementary methods. First, by use of a preparative chromatin immunoprecipitation protocol, we created from MCF7 cells a library e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0359271

    authors: Koch C,Strätling WH

    更新日期:2004-05-04 00:00:00

  • Binding of islet amyloid polypeptide to supported lipid bilayers and amyloid aggregation at the membranes.

    abstract::Amyloid deposition of human islet amyloid polypeptide (hIAPP) in the islets of Langerhans is closely associated with the pathogenesis of type II diabetes mellitus. Despite substantial evidence linking amyloidogenic hIAPP to loss of β-cell mass and decreased pancreatic function, the molecular mechanism of hIAPP cytotox...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300542g

    authors: Sasahara K,Morigaki K,Okazaki T,Hamada D

    更新日期:2012-09-04 00:00:00

  • Bimodal action of alkaline earth cations on Dictyostelium discoideum ribonuclease P activity.

    abstract::The ribonucleoprotein ribonuclease P (RNase P) cleaves all tRNA precursors endonucleolitically to produce the mature 5'-end. Dictyostelium discoideum RNase P displays an absolute requirement for Mg2+. Only the alkaline earth cations Ca2+, Sr2+, and Ba2+, under appropriate conditions can substitute to some extent for M...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9808971

    authors: Tekos A,Stathopoulos C,Drainas D

    更新日期:1998-11-03 00:00:00

  • Discovery of inhibitors of lupin diadenosine 5',5'''-P(1),P(4)-tetraphosphate hydrolase by virtual screening.

    abstract::Novel inhibitors of lupin diadenosine 5',5'''-P(1),P(4)-tetraphosphate (Ap(4)A) hydrolase have been identified by in silico screening of a large virtual chemical library. Compounds were ranked on the basis of a consensus from six scoring functions. From the top 100 ranked compounds six were selected and initially scre...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900813x

    authors: Branson KM,Mertens HD,Swarbrick JD,Fletcher JI,Kedzierski L,Gayler KR,Gooley PR,Smith BJ

    更新日期:2009-08-18 00:00:00

  • The Cys-Tyr cross-link of cysteine dioxygenase changes the optimal pH of the reaction without a structural change.

    abstract::Cysteine dioxygenase (CDO) is a non-heme monoiron enzyme with an unusual posttranslational modification in the proximity of the ferrous iron active site. This modification, a cysteine to tyrosine thioether bond, cross-links two β-strands of the β-barrel. We have investigated its role in catalysis through a combined cr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi501277a

    authors: Davies CG,Fellner M,Tchesnokov EP,Wilbanks SM,Jameson GN

    更新日期:2014-12-23 00:00:00

  • Long-range structural and dynamical changes induced by cofactor binding in DNA methyltransferase M.HhaI.

    abstract::The bacterial DNA cytosine methyltransferase M.HhaI sequence-specifically modifies DNA in an S-adenosylmethionine dependent reaction. The enzyme stabilizes the target cytosine (GCGC) into an extrahelical position, with a concomitant large movement of an active site loop involving residues 80-99. We used multidimension...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi602662e

    authors: Zhou H,Shatz W,Purdy MM,Fera N,Dahlquist FW,Reich NO

    更新日期:2007-06-19 00:00:00

  • Ca(2+)-dependent binding of endonexin (annexin IV) to membranes: analysis of the effects of membrane lipid composition and development of a predictive model for the binding interaction.

    abstract::Endonexin (annexin IV) is a member of the annexin family of homologous proteins that bind membranes and aggregate vesicles in a calcium-dependent fashion. This study examines the lipid modulation and mechanism of the binding of endonexin to membranes using a fluorescence energy transfer assay to measure bovine endonex...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00196a010

    authors: Junker M,Creutz CE

    更新日期:1994-08-02 00:00:00

  • Intramolecular triple-helix formation at (PunPyn).(PunPyn) tracts: recognition of alternate strands via Pu.PuPy and Py.PuPy base triplets.

    abstract::Triple-helical DNA shows increasing potential for applications in the control of gene expression (including therapeutics) and the development of sequence-specific DNA-cleaving agents. The major limitation in this technology has been the requirement of homopurine sequences for triplex formation. We describe a simple ap...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00117a002

    authors: Jayasena SD,Johnston BH

    更新日期:1992-01-21 00:00:00

  • Glycosylinositol phospholipid anchors of the scrapie and cellular prion proteins contain sialic acid.

    abstract::The only identified component of the scrapie prion is PrPSc, a glycosylinositol phospholipid (GPI)-linked protein that is derived from the cellular isoform (PrPC) by an as yet unknown posttranslational event. Analysis of the PrPSc GPI has revealed six different glycoforms, three of which are unprecedented. Two of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00136a600

    authors: Stahl N,Baldwin MA,Hecker R,Pan KM,Burlingame AL,Prusiner SB

    更新日期:1992-06-02 00:00:00

  • Chromium(III) modification of the first metal binding site of phosphoenolpyruvate carboxykinase.

    abstract::Chicken liver phosphoenolpyruvate carboxykinase (PEPCK) is activated by Cr2+ as the sole activator under anaerobic conditions. PEPCK was modified with Cr3+, starting with either Cr2+ or Cr3+. Cr3+ has the distinct advantage of being a paramagnetic cation that could serve as a paramagnetic probe. Activators Mn2+, Mg2+,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9807299

    authors: Hlavaty JJ,Nowak T

    更新日期:1998-06-02 00:00:00

  • Investigation of the mineral phases of bone by solid-state phosphorus-31 magic angle sample spinning nuclear magnetic resonance.

    abstract::Phosphorus-31 magic angle sample spinning NMR spectra have been employed to investigate the structure and composition of the mineral deposits in chicken bone. Three different pulse sequences, Bloch decay, cross-polarization, and dipolar suppression, were employed to obtain spectra from bone specimens of varying age. T...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00320a033

    authors: Roufosse AH,Aue WP,Roberts JE,Glimcher MJ,Griffin RG

    更新日期:1984-12-04 00:00:00

  • Expression and sequence analyses of serum amyloid A in the Syrian hamster.

    abstract::Reactive amyloidosis occurs during chronic inflammation and involves deposition of amyloid A (AA) fibrils in many organs. Amyloid A is derived by proteolysis from serum amyloid A component (SAA), a major acute-phase reactant in many species. Since spontaneous amyloidosis occurs commonly in Syrian hamsters, we have stu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00437a040

    authors: Webb CF,Tucker PW,Dowton SB

    更新日期:1989-05-30 00:00:00

  • Recognition of Dictyostelium discoideum lysosomal enzymes is conferred by the amino-terminal carbohydrate binding site of the insulin-like growth factor II/mannose 6-phosphate receptor.

    abstract::The insulin-like growth factor-II/mannose 6-phosphate receptor (IGF-II/MPR) is a type I glycoprotein that mediates both the intracellular sorting of lysosomal enzymes bearing mannose 6-phosphate (Man-6-P) residues to the lysosome and the bioavailability of IGF-II. The extracytoplasmic region of the IGF-II/MPR contains...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992226o

    authors: Marron-Terada PG,Hancock MK,Haskins DJ,Dahms NM

    更新日期:2000-03-07 00:00:00

  • Engineered biosynthesis of novel polyketides: regiospecific methylation of an unnatural substrate by the tcmO O-methyltransferase.

    abstract::TcmO is an O-methyltransferase that methylates the C-8 hydroxyl to Tcm B3, a four-ring aromatic intermediate in the tetracenomycin biosynthetic pathway of Streptomyces glaucescens. The gene encoding this enzyme was expressed in Streptomyces coelicolor CH999 together with the actinorhodin polyketide synthase (PKS) gene...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952957y

    authors: Fu H,Alvarez MA,Khosla C,Bailey JE

    更新日期:1996-05-28 00:00:00

  • Role of Ca(2+) in the Stability and Function of TMEM16F and 16K.

    abstract::There are 10 transmembrane protein (TMEM) 16-family proteins in humans and mice. Among them, TMEM16F acts as a Ca(2+)-dependent phospholipid scramblase at the plasma membrane. However, how Ca(2+) activates TMEM16F's phospholipid-scramblase activity has not been elucidated. Here we found that in the presence of Ca(2+),...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00176

    authors: Ishihara K,Suzuki J,Nagata S

    更新日期:2016-06-14 00:00:00

  • Ia-associated invariant chain is fatty acylated before addition of sialic acid.

    abstract::The murine invariant chain (Ii) was found to incorporate radioactive palmitic acid. This binding of fatty acid inhibits the formation of interchain S-S bonds, probably because the cysteine residue in the transmembrane region of the Ii chain is palmitylated. The inhibition of fatty acylation by cerulenin blocks further...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00343a023

    authors: Koch N,Hämmerling GJ

    更新日期:1985-10-22 00:00:00

  • Activation of soluble guanylyl cyclase by four-coordinate metalloporphyrins: evidence for a role for porphyrin conformation.

    abstract::Four-coordinate metalloporphyrins activate soluble guanylyl cyclase. Ni(II)PPIX and Cu(II)PPIX are high affinity activators, with activation constants of 24 and 17 nM, respectively. Both metalloporphyrins remain stably bound to the enzyme, enabling spectroscopic characterization of the Ni(II)- and Cu(II)-reconstituted...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010777k

    authors: Carr HS,Tran D,Reynolds MF,Burstyn JN,Spiro TG

    更新日期:2002-08-06 00:00:00

  • 3'- and 5'-strand cleavage reactions catalyzed by the Fpg protein from Escherichia coli occur via successive beta- and delta-elimination mechanisms, respectively.

    abstract::The Fpg protein from Escherichia coli is a multifunctional protein that excises damaged purine bases from DNA to generate aldehydic abasic sites and then catalyzes the successive cleavage of the phosphodiester bonds first on the 3'-side and then on the 5'-side of the abasic site to generate 5'- and 3'-phosphate ends, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9522662

    authors: Bhagwat M,Gerlt JA

    更新日期:1996-01-16 00:00:00

  • Isolation and in vitro phosphorylation of sensory transduction components controlling anaerobic induction of light harvesting and reaction center gene expression in Rhodobacter capsulatus.

    abstract::Anaerobic induction of light harvesting and reaction center gene expression involves two transacting factors termed RegA and RegB. Sequence and mutational analysis has indicated that RegA and RegB constitute cognate components of a prokaryotic sensory transduction cascade with RegB comprising a membrane-spanning senso...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00002a002

    authors: Inoue K,Kouadio JL,Mosley CS,Bauer CE

    更新日期:1995-01-17 00:00:00

  • Generality of the NUX rule: kinetic analysis of the results of systematic mutations in the trinucleotide at the cleavage site of hammerhead ribozymes.

    abstract::In order to study in detail the generality of the NUX (N = A, U, G, or C; X = A, U, or C) rule for the GUC triplet adjacent to the cleavage site in hammerhead ribozymes, two kinetic parameters, namely, kcat and Km, were determined for substrates with mutations in this triplet, which included double mutants with mutati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00011a020

    authors: Shimayama T,Nishikawa S,Taira K

    更新日期:1995-03-21 00:00:00

  • Acetylcholine receptor: evidence for a regulatory binding site in investigations of suberyldicholine-induced transmembrane ion flux in Electrophorus electricus membrane vesicles.

    abstract::Suberyldicholine-induced ion translocation in the millisecond time region in acetylcholine receptor rich membrane vesicles prepared from the electric organ of Electrophorus electricus was investigated in eel Ringer's solution, pH 7.0, 1 degree C. A quench-flow technique with a time resolution of 5 ms was used to measu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00294a041

    authors: Pasquale EB,Takeyasu K,Udgaonkar JB,Cash DJ,Severski MC,Hess GP

    更新日期:1983-12-06 00:00:00