Subunit disassembly and unfolding kinetics of hemoglobin studied by time-resolved electrospray mass spectrometry.

Abstract:

:We report the use of electrospray ionization (ESI) mass spectrometry (MS) in conjunction with online rapid mixing to monitor the kinetics of acid-induced ferrihemoglobin denaturation. Under equilibrium conditions, the hemoglobin mass spectrum is dominated by the intact heterotetramer. Dimeric and monomeric species are also observed at lower intensities. In addition, ionic signals corresponding to hexameric (tetramer-dimer) and octameric (tetramer x 2) hemoglobin species are observed. These complexes may represent weak solution-phase assemblies. The acid-induced denaturation process was monitored for reaction time ranging from 9 ms to approximately 3 s. The data obtained were subjected to a global analysis procedure which simultaneously fit all kinetic (ESI-MS intensity vs time) profiles to multiexponential expressions. Results of the global analysis are consistent with the coexistence of two subpopulations of tetrameric hemoglobin which differ in their disassembly rates and ESI charge states. The higher-charge state tetramer ions preferentially dissociate via a rapid pathway (tau(1) = 51 ms), resulting in the transient formation of a heme-saturated dimer, holo-alpha-globin, and a heme-deficient dimer. The latter is shown by MS/MS to be comprised of a heme-bound alpha-subunit complexed with an apo-beta-chain. The slow-decaying tetramer population, apparent at a slightly lower average charge state, breaks down into its monomeric constituents with no observable intermediate species (tau(2) = 390 ms). Surprisingly, unfolded apo-alpha-globin is formed more rapidly than unfolded apo-beta-globin. The appearance of the latter occurs with a relaxation time tau(3) of 1.2 s. It is postulated that accumulation of unfolded apo-beta-globin is delayed by transient population of an undetected unfolding intermediate.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Simmons DA,Wilson DJ,Lajoie GA,Doherty-Kirby A,Konermann L

doi

10.1021/bi048501a

subject

Has Abstract

pub_date

2004-11-23 00:00:00

pages

14792-801

issue

46

eissn

0006-2960

issn

1520-4995

journal_volume

43

pub_type

杂志文章
  • Site-directed mutagenesis in hemoglobin: functional and structural role of inter- and intrasubunit hydrogen bonds as studied with 37 beta and 145 beta mutations.

    abstract::In order to clarify the functional and structural role of intra- and intersubunit hydrogen bonds in human hemoglobin (Hb A), we prepared two artificial beta chain mutant hemoglobins by site-directed mutagenesis. The mutant Hb Phe-37 beta, in which Trp-37 beta is replaced by Phe to remove the intersubunit hydrogen bond...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00127a030

    authors: Ishimori K,Imai K,Miyazaki G,Kitagawa T,Wada Y,Morimoto H,Morishima I

    更新日期:1992-03-31 00:00:00

  • Four-fold channels are involved in iron diffusion into the inner cavity of plant ferritin.

    abstract::From an evolutionary point of view, plant and animal ferritins arose from a common ancestor, but plant ferritin exhibits different features as compared with the animal analogue. One major difference is that the 4-fold channels naturally occurring in plant ferritin are hydrophilic, whereas the 4-fold channels in animal...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500066m

    authors: Lv C,Zhang S,Zang J,Zhao G,Xu C

    更新日期:2014-04-15 00:00:00

  • T antigen origin-binding domain of simian virus 40: determinants of specific DNA binding.

    abstract::To better understand origin recognition and initiation of DNA replication, we have examined by NMR complexes formed between the origin-binding domain of SV40 T antigen (T-ag-obd), the initiator protein of the SV40 virus, and cognate and noncognate DNA oligomers. The results reveal two structural effects associated wit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi030228+

    authors: Bradshaw EM,Sanford DG,Luo X,Sudmeier JL,Gurard-Levin ZA,Bullock PA,Bachovchin WW

    更新日期:2004-06-08 00:00:00

  • Fluorescence photobleaching recovery measurements of surface lateral mobilities on normal and SV40-transformed mouse fibroblasts.

    abstract::Lateral mobilities of fluorescent cell surface probes have been measured on normal (3T3) and transformed (SV3T3) cultured mouse fibroblasts. There is little discernible difference in the mobilities of a lipid analogue (diI), a fluorescent ganglioside derivative (GM1), and tetramethylrhodamine-labeled succinylated conc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00551a011

    authors: Eldridge CA,Elson EL,Webb WW

    更新日期:1980-05-13 00:00:00

  • Iron-sulfur cluster biosynthesis. Kinetic analysis of [2Fe-2S] cluster transfer from holo ISU to apo Fd: role of redox chemistry and a conserved aspartate.

    abstract::ISU-type proteins mediate cluster transfer to apo protein targets. Rate constants have been determined for cluster transfer from ISU to apo Fd for both Homo sapiens and Schizosaccharomyces pombe proteins, and cross reactions have also been examined. Substitution of a key aspartate residue of ISU is found to decrease t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0256781

    authors: Wu SP,Wu G,Surerus KK,Cowan JA

    更新日期:2002-07-16 00:00:00

  • Unfolding behavior of human alpha 1-acid glycoprotein is compatible with a loosely folded region in its polypeptide chain.

    abstract::The unfolding of human plasma alpha 1-acid glycoprotein (AGP) induced by heat or guanidine hydrochloride was studied under equilibrium conditions. In thermal unfolding, an intermediate state was detected by the appearance of unusual positive difference absorption bands in the 287-295-nm region, which occurred at lower...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00489a026

    authors: Rojo-Domínguez A,Zubillaga-Luna R,Hernández-Arana A

    更新日期:1990-09-18 00:00:00

  • Conformational distributions of a four-way DNA junction revealed by time-resolved fluorescence resonance energy transfer.

    abstract::Conformational distributions of a four-way DNA junction have been examined by time-resolved fluorescence resonance energy transfer (FRET). A series of dye-labeled junctions were synthesized with donor (fluorescein) and acceptor (tetramethylrhodamine) dyes conjugated to the 5' termini of the duplex arms in all six pair...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00213a014

    authors: Eis PS,Millar DP

    更新日期:1993-12-21 00:00:00

  • Interaction of LDS-751 with P-glycoprotein and mapping of the location of the R drug binding site.

    abstract::One cause of multidrug resistance is the overexpression of P-glycoprotein, a 170 kDa plasma membrane ABC transporter, which functions as an ATP-driven efflux pump with broad specificity for hydrophobic drugs, peptides, and natural products. The protein appears to interact with its substrates within the membrane enviro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0485326

    authors: Lugo MR,Sharom FJ

    更新日期:2005-01-18 00:00:00

  • Spectroscopic studies of ascorbate oxidase. Electronic structure of the blue copper sites.

    abstract::Low-temperature electronic absorption and room temperature circular dichroism (CD) and magnetic circular dichroism (MCD) spectra are reported for ascorbate oxidase. Bands attributable to d-d electronic transitions in the type 1 (blue) coppers (2B2 ground state) have been observed at 5800, 10000, and 12000 cm-1 (1725, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00510a044

    authors: Dooley DM,Dawson JH,Stephens PJ,Gray HB

    更新日期:1981-03-31 00:00:00

  • Effect of insulin on ATP-citrate lyase phosphorylation: regulation of peptide A and peptide B phosphorylations.

    abstract::Insulin decreases multifunctional protein kinase (MFPK) activity in rat adipose tissue [Ramakrishna, S., & Benjamin, W. B. (1988) J. Biol. Chem. 263, 12677-12681]. Insulin also decreases the phosphorylation of peptide B but increases the phosphorylation of peptide A of ATP-citrate lyase (ATP-CL). The mechanism for thi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00428a067

    authors: Ramakrishna S,Murthy KS,Benjamin WB

    更新日期:1989-01-24 00:00:00

  • Amino-terminal domain of TIF2 is involved in competing for corepressor binding to glucocorticoid and progesterone receptors.

    abstract::Both agonist- and antagonist-bound glucocorticoid receptors (GRs) and progesterone receptors (PRs) regulate gene transcription with the assistance of corepressors (NCoR and SMRT) and coactivators (TIF2/GRIP1, SRC1, and AIB1). Receptor binding of these cofactors is competitive and is considered to involve interactions ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7004575

    authors: Wang D,Wang Q,Awasthi S,Simons SS Jr

    更新日期:2007-07-10 00:00:00

  • Investigation of the structure of bovine erythrocyte superoxide dismutase by 1H nuclear magnetic resonance spectroscopy.

    abstract::The 270-MHz 1H nuclear magnetic resonance spectra of the apo, copper(I)-zinc(II), and copper(II)-zinc(II) forms of bovine erythrocyte superoxide dismutase (EC 1.15.1.1) are reported, and assignments of resonances to ten amino acid residues are proposed. The data require that at least four and probably six histidine re...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00633a003

    authors: Cass AE,Hill AO,Smith BE,Bannister JV,Bannister WH

    更新日期:1977-07-12 00:00:00

  • Triple helix forming TRIPside molecules that target mixed purine/pyrimidine DNA sequences.

    abstract::A new strategy to form stable and sequence-specific triple helical DNA structures at mixed purine/pyrimidine sequences using a combination of four C-glycosides (TRIPsides) has been described [Li et al. (2003) J. Am. Chem. Soc. 125, 2084]. The partial realization of the approach is demonstrated by incorporating two of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035648d

    authors: Li JS,Shikiya R,Marky LA,Gold B

    更新日期:2004-02-17 00:00:00

  • Mapping the bimolecular interface of the parathyroid hormone (PTH)-PTH1 receptor complex: spatial proximity between Lys(27) (of the hormone principal binding domain) and leu(261) (of the first extracellular loop) of the human PTH1 receptor.

    abstract::In an effort to characterize the bimolecular interface between parathyroid hormone (PTH) and its human receptor PTH1-Rc (hPTH1-Rc), we previously identified two contact sites in the receptor: one for position 1 and another for position 13 (located at the ends of the principal activation domain) in PTH(1-34). The prese...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000195n

    authors: Greenberg Z,Bisello A,Mierke DF,Rosenblatt M,Chorev M

    更新日期:2000-07-18 00:00:00

  • Conversion of aminodeoxychorismate synthase into anthranilate synthase with Janus mutations: mechanism of pyruvate elimination catalyzed by chorismate enzymes.

    abstract::The central importance of chorismate enzymes in bacteria, fungi, parasites, and plants combined with their absence in mammals makes them attractive targets for antimicrobials and herbicides. Two of these enzymes, anthranilate synthase (AS) and aminodeoxychorismate synthase (ADCS), are structurally and mechanistically ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00013

    authors: Culbertson JE,Chung Dh,Ziebart KT,Espiritu E,Toney MD

    更新日期:2015-04-14 00:00:00

  • Volume changes during enzyme reactions: indications of enzyme pulsation during fumarase catalysis.

    abstract::Overall activation volumes for multistep reactions are not usually pressure independent. The present investigation gives a quantitative description of this effect under Theory. Simple relations are obtained which can easily be applied to experimental data and which allow more insight into the dynamics of enzyme reacti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00405a024

    authors: Butz P,Greulich KO,Ludwig H

    更新日期:1988-03-08 00:00:00

  • Understanding the changes in the circular dichroism of light harvesting complex II upon varying its pigment composition and organization.

    abstract::In this work we modeled the circular dichroism (CD) spectrum of LHCII, the main light harvesting antenna of photosystem II of higher plants. Excitonic calculations are performed for a monomeric subunit, taken from the crystal structure of trimeric LHCII from spinach [Liu, Z. F., Yan, H. C., Wang, K. B., Kuang, T. Y., ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi062031y

    authors: Georgakopoulou S,van der Zwan G,Bassi R,van Grondelle R,van Amerongen H,Croce R

    更新日期:2007-04-24 00:00:00

  • Probe of beta-galactosidase structure with iodoacetate. Differential reactivity of thiol groups in wild-type and mutant forms of beta-galactosidase.

    abstract::Carboxymethylation with 14 C-labeled iodoacetate of cysteine residues in wild-type beta-galactosidase from Escherichia coli and in a defective beta-galactosidase from deletion mutant strain M15 was investigated in order to determine accessible positions in the tetrameric wild-type form and the dimeric mutant M15 prote...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00617a015

    authors: Jörnvall H,Fowler AV,Zabin I

    更新日期:1978-11-28 00:00:00

  • Hydrolysis of dihydrouridine and related compounds.

    abstract::Dihydrouridine is absent from the tRNA of almost all hyperthermophiles and most Archaea but is ubiquitous in the tRNA of Eubacteria and Eukaryotes. In order to investigate whether this could be due to instability, the rate of ring opening of dihydrouridine was measured between 25 and 120 degrees C. The dihydrouridine ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi951577+

    authors: House CH,Miller SL

    更新日期:1996-01-09 00:00:00

  • The A-state of barnase.

    abstract::The acid-induced denaturation of barnase and its mutants has been analyzed to search for partly-folded intermediates. Differential scanning calorimetry of barnase deviates from two-state behavior below pH 4.0 at low ionic strength, with the maximum discrepancy at pH 2.7. Addition of 200 mM KCl apparently restores the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00203a015

    authors: Sanz JM,Johnson CM,Fersht AR

    更新日期:1994-09-20 00:00:00

  • Favored incorporation of tubercidin in poly(adenylic, 7-deazadenylic acids) and their function as messenger ribonucleic acids in protein synthesis.

    abstract::The following polynucleotides containing the antibiotic tubercidin (Tu; 4-amino-7-beta-D-ribofuranosylpyrrolo-[2,3-d]pyrimidine) were enzymatically synthesized by polymerization of adenosine 5'-diphosphate-tubercidin 5'-diphosphate mixtures with polynucleotide phosphorylase: poly(A2,Tu), poly(A,Tu2), and poly(Tu). The...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00512a030

    authors: Seela F,Tran TQ,Mentzel H,Erdmann VA

    更新日期:1981-04-28 00:00:00

  • Nuclear magnetic resonance study of the Schiff base in bacteriorhodopsin: counterion effects on the 15N shift anisotropy.

    abstract::High-resolution, solid-state 15N NMR has been used to study the chemical shift anisotropies of the Schiff bases in bacteriorhodopsin (bR) and in an extensive series of model compounds. Using slow-spinning techniques, we are able to obtain sufficient rotational sideband intensity to determine the full 15N chemical shif...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00434a033

    authors: de Groot HJ,Harbison GS,Herzfeld J,Griffin RG

    更新日期:1989-04-18 00:00:00

  • Heterotropic effectors promote a global conformational change in aspartate transcarbamoylase.

    abstract::The sigmoidal dependence of activity on substrate concentration exhibited by the regulatory enzyme aspartate transcarbamoylase (ATCase) of Escherichia coli is generally attributed to a ligand-promoted change in the quaternary structure of the enzyme. Although a global conformational change in ATCase upon the binding o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00467a019

    authors: Eisenstein E,Markby DW,Schachman HK

    更新日期:1990-04-17 00:00:00

  • Tuning the reduction potential of engineered cytochrome c-553.

    abstract::Cytochrome c-553 from Desulfovibrio vulgaris exhibits a highly exposed heme and an unusually low reduction potential with respect to other c-type cytochromes. Solvent heme exposure has been indicated as one of the most important factors in modulating the midpoint potential of the redox center. To test this hypothesis,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi025759x

    authors: Fantuzzi A,Sadeghi S,Valetti F,Rossi GL,Gilardi G

    更新日期:2002-07-09 00:00:00

  • Tuning the Binding Affinities and Reversion Kinetics of a Light Inducible Dimer Allows Control of Transmembrane Protein Localization.

    abstract::Inducible dimers are powerful tools for controlling biological processes through colocalizing signaling molecules. To be effective, an inducible system should have a dissociation constant in the "off" state that is greater (i.e., weaker affinity) than the concentrations of the molecules that are being controlled, and ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00529

    authors: Zimmerman SP,Hallett RA,Bourke AM,Bear JE,Kennedy MJ,Kuhlman B

    更新日期:2016-09-20 00:00:00

  • Reduction of ferrylmyoglobin and ferrylhemoglobin by nitric oxide: a protective mechanism against ferryl hemoprotein-induced oxidations.

    abstract::The reactions of metmyoglobin (metMb) and methemoglobin (metHb), oxidized to their respective oxoferryl free radical species (.Mb-FeIV = O/.Hb-4FeIV = O) by tert-butyl hydroperoxide (t-BuOOH), with nitric oxide (NO.) were studied by a combination of optical, electron spin resonance (ESR), ionspray mass (MS), fluoresce...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00020a014

    authors: Gorbunov NV,Osipov AN,Day BW,Zayas-Rivera B,Kagan VE,Elsayed NM

    更新日期:1995-05-23 00:00:00

  • Synthesis and characterization of a new fluorogenic active-site titrant of serine proteases.

    abstract::The molecule 3',6'-bis(4-guanidinobenzoyloxy)-5-[N'-(4-carboxyphenyl)thioureido[spirop]isobenzofuran-1-(3H),9'-[9H]xanthen]-3-one, abbreviated FDE, was designed and synthesized as a fluorogenic active-site titrant for serine proteases. It is an analogue of p-nitrophenyl p-guanidino-benzoate (NPGB) in which a fluoresce...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00518a010

    authors: Livingston DC,Brocklehurst JR,Cannon JF,Leytus SP,Wehrly JA,Peltz SW,Peltz GA,Mangel WF

    更新日期:1981-07-21 00:00:00

  • Structure of the third cytoplasmic loop of bovine rhodopsin.

    abstract::The three-dimensional high-resolution structure of rhodopsin is unknown, as is the case for almost all integral membrane patients. As part of an alternative approach to determine of membrane protein structure, we are pursuing the structure of cytoplasmic domains of this G-protein receptor. A peptide, rhoIII, with the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00045a002

    authors: Yeagle PL,Alderfer JL,Albert AD

    更新日期:1995-11-14 00:00:00

  • Structural Diversity of Amyloid Fibrils and Advances in Their Structure Determination.

    abstract::Protein amyloid fibrils are originally identified as pathological entities in a variety of neurodegenerative diseases such as Alzheimer's disease and Parkinson's disease. Recent studies have revealed that amyloid fibrils also serve as functional protein assemblies to fulfill a wide range of biological functions. Decip...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.9b01069

    authors: Li D,Liu C

    更新日期:2020-02-11 00:00:00

  • Membrane topology of human ASBT (SLC10A2) determined by dual label epitope insertion scanning mutagenesis. New evidence for seven transmembrane domains.

    abstract::The membrane topology of the human apical sodium-dependent bile acid transporter (hASBT) remains unresolved. Whereas N-glycosylation analysis favors a 7 transmembrane (TM) model, membrane insertion scanning supports a 9TM topology. In order to resolve this controversy, we used dual label epitope insertion to systemati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052202j

    authors: Banerjee A,Swaan PW

    更新日期:2006-01-24 00:00:00