Structure of the third cytoplasmic loop of bovine rhodopsin.

Abstract:

:The three-dimensional high-resolution structure of rhodopsin is unknown, as is the case for almost all integral membrane patients. As part of an alternative approach to determine of membrane protein structure, we are pursuing the structure of cytoplasmic domains of this G-protein receptor. A peptide, rhoIII, with the sequence of the third cytoplasmic loop of bovine rhodopsin was synthesized. This soluble peptide was biologically active, inhibiting the light-stimulated activation of the rod cell phosphodiesterase by rhodopsin in rod outer segment disks. Therefore rhoIII likely contains structural elements characteristic of native rhodopsin. The structure of rhoIII was determined by H nuclear magnetic resonance. A defined structure was obtained for about 70% of rhoIII. A model of a turn-helix-turn motif could then be proposed for the third cytoplasmic loop of rhodopsin, which suggested a molecular switch for activation of the G-protein by the receptor.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Yeagle PL,Alderfer JL,Albert AD

doi

10.1021/bi00045a002

subject

Has Abstract

pub_date

1995-11-14 00:00:00

pages

14621-5

issue

45

eissn

0006-2960

issn

1520-4995

journal_volume

34

pub_type

杂志文章
  • Mechanism of regulation of cardiac actin-myosin subfragment 1 by troponin-tropomyosin.

    abstract::The effect of Ca2+ on the interaction of bovine cardiac myosin subfragment 1 (S-1) with actin regulated by cardiac troponin-tropomyosin was evaluated. The ratios of actin to troponin and to tropomyosin were adjusted to optimize the Ca2+-dependent regulation of the steady-state actin-activated magnesium adenosinetripho...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00352a010

    authors: Tobacman LS,Adelstein RS

    更新日期:1986-02-25 00:00:00

  • Structure of the eukaryotic initiation factor (eIF) 5 reveals a fold common to several translation factors.

    abstract::Eukaryotic initiation factor 5 (eIF5) plays multiple roles in translation initiation. Its N-terminal domain functions as a GTPase-activator protein (GAP) for GTP bound to eIF2, while its C-terminal region nucleates the interactions between multiple translation factors, including eIF1, which acts to inhibit GTP hydroly...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052387u

    authors: Conte MR,Kelly G,Babon J,Sanfelice D,Youell J,Smerdon SJ,Proud CG

    更新日期:2006-04-11 00:00:00

  • Solution structure and dynamics of the functional domain of Paracoccus denitrificans cytochrome c(552) in both redox states.

    abstract::A soluble and fully functional 10.5 kDa fragment of the 18.2 kDa membrane-bound cytochrome c(552) from Paracoccus denitrificans has been heterologously expressed and (13)C/(15)N-labeled to study the structural features of this protein in both redox states. Well-resolved solution structures of both the reduced and oxid...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010615o

    authors: Reincke B,Pérez C,Pristovsek P,Lücke C,Ludwig C,Löhr F,Rogov VV,Ludwig B,Rüterjans H

    更新日期:2001-10-16 00:00:00

  • Acquisition of an insertion peptide for efficient aminoacylation by a halophile tRNA synthetase.

    abstract::Enzymes of halophilic organisms contain unusual peptide motifs that are absent from their mesophilic counterparts. The functions of these halophile-specific peptides are largely unknown. Here we have identified an unusual peptide that is unique to several halophile archaeal cysteinyl-tRNA synthetases (CysRS), which ca...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0521386

    authors: Evilia C,Hou YM

    更新日期:2006-06-06 00:00:00

  • The synthetic/editing active site of an aminoacyl-tRNA synthetase: evidence for binding of thiols in the editing subsite.

    abstract::The active site of methionyl-tRNA synthetase (MetRS) possesses two functions: synthetic, which provides Met-tRNA for protein synthesis, and editing, which rejects inadvertently misactivated homocysteine. During editing, the side chain -SH group of homocysteine reacts with its activated carboxyl group forming a cyclic ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960344v

    authors: Jakubowski H

    更新日期:1996-06-25 00:00:00

  • Purification, characterization, and fibrinogen cleavage sites of three fibrinolytic enzymes from the venom of Crotalus basiliscus basiliscus.

    abstract::Three distinct fibrinolytic enzymes have been purified from the venom of Crotalus basiliscus basiliscus (the Mexican west coast rattlesnake). The high-performance liquid chromatography-based purification comprised the following steps: (a) hydrophobic interaction chromatography; (b) hydroxylapatite chromatography; (c) ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00134a003

    authors: Retzios AD,Markland FS Jr

    更新日期:1992-05-19 00:00:00

  • Catalytic significance of the specificity of divalent cations as KS* and kcat* cofactors for secreted phospholipase A2.

    abstract::Calcium is required for the substrate binding and for the chemical step of the interfacial catalytic turnover cycle of pancreatic phospholipase A2 (PLA2), but not for the binding of the enzyme to the interface. The role of calcium and other divalent cations (C) is analyzed for the effect on the substrate binding and k...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9728607

    authors: Yu BZ,Rogers J,Nicol GR,Theopold KH,Seshadri K,Vishweshwara S,Jain MK

    更新日期:1998-09-08 00:00:00

  • Human class I alcohol dehydrogenases catalyze the interconversion of alcohols and aldehydes in the metabolism of dopamine.

    abstract::The class I human liver alcohol dehydrogenases (ADHs) catalyze the interconversion of the intermediary alcohols and aldehydes of dopamine metabolism in vitro, whereas those of the class II and class III do not. The individual, homogeneous class I isozymes oxidize (3,4-dihydroxyphenyl)ethanol and (4-hydroxy-3-methoxyph...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00371a005

    authors: Mårdh G,Vallee BL

    更新日期:1986-11-18 00:00:00

  • Hydrogen bonds of water and C==O groups coordinate long-range structural changes in the L photointermediate of bacteriorhodopsin.

    abstract::Fourier transform infrared spectra of light-adapted bacteriorhodopsin exhibit a band at 1618 cm(-1) that shifts to 1625 cm(-1) upon formation of the L intermediate. It is assigned to the peptide C==O of Val49 from the fact that it shifts in [1-(13)C]valine-labeled bacteriorhodopsin and appears perturbed in the Val49--...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9524530

    authors: Yamazaki Y,Tuzi S,Saitô H,Kandori H,Needleman R,Lanyi JK,Maeda A

    更新日期:1996-04-02 00:00:00

  • Morin inhibits the early stages of amyloid β-peptide aggregation by altering tertiary and quaternary interactions to produce "off-pathway" structures.

    abstract::Alzheimer's disease is a debilitating neurodegenerative disorder whose pathology has been linked to the aggregation and deposition of the amyloid β-peptide (Aβ) in neural tissue. A truly effective therapeutic agent remains elusive, and attention has recently turned to the use of natural products as effective antiaggre...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300113x

    authors: Lemkul JA,Bevan DR

    更新日期:2012-07-31 00:00:00

  • Structures of Escherichia coli histidinol-phosphate aminotransferase and its complexes with histidinol-phosphate and N-(5'-phosphopyridoxyl)-L-glutamate: double substrate recognition of the enzyme.

    abstract::Histidinol-phosphate aminotransferase (HspAT) is a key enzyme on the histidine biosynthetic pathway. HspAT catalyzes the transfer of the amino group of L-histidinol phosphate (Hsp) to 2-oxoglutarate to form imidazole acetol phosphate (IAP) and glutamate. Thus, HspAT recognizes two kinds of substrates, Hsp and glutamat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002769u

    authors: Haruyama K,Nakai T,Miyahara I,Hirotsu K,Mizuguchi H,Hayashi H,Kagamiyama H

    更新日期:2001-04-17 00:00:00

  • Molecular basis for membrane pore formation by Bax protein carboxyl terminus.

    abstract::Bax protein plays a key role in mitochondrial membrane permeabilization and cytochrome c release upon apoptosis. Our recent data have indicated that the 20-residue C-terminal peptide of Bax (BaxC-KK; VTIFVAGVLTASLTIWKKMG), when expressed intracellularly, translocates to the mitochondria and exerts lethal effect on can...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi301195f

    authors: Tatulian SA,Garg P,Nemec KN,Chen B,Khaled AR

    更新日期:2012-11-20 00:00:00

  • Reevaluation of the stoichiometry of cytochrome b559 in photosystem II and thylakoid membranes.

    abstract::The stoichiometry of cytochrome b559 (one or two copies) per reaction center of photosystem II (PSII) has been the subject of considerable debate. The molar ratio of cytochrome b559 has a number of significant implications on our understanding of the functional role of cytochrome b559, the mechanism of electron donati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00161a024

    authors: Buser CA,Diner BA,Brudvig GW

    更新日期:1992-11-24 00:00:00

  • The ionic track in the F1-ATPase from the thermophilic Bacillus PS3.

    abstract::Only beta-beta cross-links form when the alpha(3)(betaE(395)C)(3)gammaK(36)C (MF(1) residue numbers) double mutant subcomplex of TF(1), the F(1)-ATPase from the thermophilic Bacillus PS3, is slowly inactivated with CuCl(2) in the presence or absence of MgATP. The same slow rate of inactivation and extent of beta-beta ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi036058i

    authors: Bandyopadhyay S,Allison WS

    更新日期:2004-03-09 00:00:00

  • Reevaluation of interaction of cis-dichloro(ethylenediamine)platinum(II) with DNA.

    abstract::Intrastrand cross-links represent the majority of modifications in DNA resulting from interaction with the cancer chemotherapeutic drug cis-diamminedichloroplatinum(II) (cis-DDP). These adducts were recently characterized although several discrepancies remained to be resolved. In these studies, [3H]-cis-dichloro(ethyl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00361a026

    authors: Eastman A

    更新日期:1986-07-01 00:00:00

  • Three novel oligosaccharides with the sialyl-Lea structure in human milk: isolation by immunoaffinity chromatography.

    abstract::We have determined the structures of three novel oligosaccharides isolated from human milk using the monoclonal antibody MSW 113. These oligosaccharides were purified by affinity chromatography on a column of the immobilized monoclonal antibody and by high-performance liquid chromatography. From the results of 500-MHz...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00448a031

    authors: Kitagawa H,Nakada H,Kurosaka A,Hiraiwa N,Numata Y,Fukui S,Funakoshi I,Kawasaki T,Yamashina I,Shimada I

    更新日期:1989-10-31 00:00:00

  • Effect of β,γ-CHF- and β,γ-CHCl-dGTP halogen atom stereochemistry on the transition state of DNA polymerase β.

    abstract::Recently, we synthesized the first individual β,γ-CHX-dGTP diastereomers [(R)- or (S)-CHX, where X is F or Cl] and determined their structures in ternary complexes with DNA polymerase β (pol β). We now report stereospecificity by pol β on the mixed β,γ-CHX diastereomer pairs using nuclear magnetic resonance and on the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi3010335

    authors: Oertell K,Wu Y,Zakharova VM,Kashemirov BA,Shock DD,Beard WA,Wilson SH,McKenna CE,Goodman MF

    更新日期:2012-10-30 00:00:00

  • A molecular envelope of the ligand-binding domain of a glutamate receptor in the presence and absence of agonist.

    abstract::Solution scattering studies were performed on a ligand-binding domain (S1S2) of a glutamate receptor ion channel (GluR) in order to study GluR-binding and signal-transduction mechanisms. The core of the ligand-binding domain is homologous to prokaryotic periplasmic binding proteins (PBP), whose binding mechanism invol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982928y

    authors: Abele R,Svergun D,Keinänen K,Koch MH,Madden DR

    更新日期:1999-08-24 00:00:00

  • Gross structural changes in isolated liver cell plasma membranes upon binding of insulin.

    abstract::The addition of 10(-9) M insulin to a suspension of rat liver plasma membranes increases the overall lipid microviscosity, eta, by about 10--20%. The effect is confined to physiological concentrations of the hormone and is highly specific. The specificity was demonstrated in experiments where insulin analogues were ad...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00570a009

    authors: Luly P,Shinitzky M

    更新日期:1979-02-06 00:00:00

  • Dynamics of light-induced activation in the PAS domain proteins LOV2 and PYP probed by time-resolved tryptophan fluorescence.

    abstract::Light-induced activation of the LOV2-Jα domain of the photoreceptor phototropin from oat is believed to involve the detachment of the Jα helix from the central β-sheet and its subsequent unfolding. The dynamics of these conformational changes were monitored by time-resolved emission spectroscopy with 100 ns time resol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101413v

    authors: Hoersch D,Bolourchian F,Otto H,Heyn MP,Bogomolni RA

    更新日期:2010-12-28 00:00:00

  • Nuclear magnetic resonance study of the Schiff base in bacteriorhodopsin: counterion effects on the 15N shift anisotropy.

    abstract::High-resolution, solid-state 15N NMR has been used to study the chemical shift anisotropies of the Schiff bases in bacteriorhodopsin (bR) and in an extensive series of model compounds. Using slow-spinning techniques, we are able to obtain sufficient rotational sideband intensity to determine the full 15N chemical shif...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00434a033

    authors: de Groot HJ,Harbison GS,Herzfeld J,Griffin RG

    更新日期:1989-04-18 00:00:00

  • Dual-wavelength ratiometric fluorescence measurements of membrane potential.

    abstract::This work shows that the voltage across membranes in two very different preparations, lipid vesicles in suspension and individual HeLa cells under a microscope, is linearly related to the ratio of fluorescence excited from the two wings of the absorption spectrum of a voltage-sensitive dye. The dye di-4-ANEPPS [1-(3-s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00437a003

    authors: Montana V,Farkas DL,Loew LM

    更新日期:1989-05-30 00:00:00

  • 4-Azido-2-nitrophenyl phosphate, a new photoaffinity derivative of inorganic phosphate. Study of its interaction with the inorganic phosphate binding site of beef heart mitochondrial adenosine triphosphatase.

    abstract::4-Azido-2-nitrophenyl phosphate (ANPP) was synthesized and characterized. ANPP, unlabeled or labeled by 32P, was used as a photoreactive analogue of Pi to study the Pi binding site(s) in isolated F1-ATPase and inside-out particles from beef heart mitochondria. In the dark, the phosphate bond of ANPP was cleaved by alk...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00561a013

    authors: Lauquin G,Pougeois R,Vignais PV

    更新日期:1980-09-30 00:00:00

  • Different structural and kinetic requirements for the interaction of Ran with the Ran-binding domains from RanBP2 and importin-beta.

    abstract::The cytoplasmic disassembly of Ran.GTP.importin and Ran.GTP.exportin. cargo complexes is an essential step in the corresponding nuclear import and export cycles. It has previously been shown that such disassembly can be mediated by RanBP1 in the presence of RanGAP. The nuclear pore complex protein RanBP2 (Nup358) cont...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001010f

    authors: Villa Braslavsky CI,Nowak C,Görlich D,Wittinghofer A,Kuhlmann J

    更新日期:2000-09-26 00:00:00

  • Effects of polyamines, polyamine analogs, and inhibitors of protein synthesis on spermidine-spermine N1-acetyltransferase gene expression.

    abstract::The key polyamine catabolizing enzyme spermidine-spermine N1-acetyltransferase (SSAT) is among the few genes known to be inducible by the natural polyamines. Certain polyamine analogs markedly exaggerate this response and thus provide useful tools for studying the underlying regulatory mechanisms. As shown here, the a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9612273

    authors: Fogel-Petrovic M,Vujcic S,Brown PJ,Haddox MK,Porter CW

    更新日期:1996-11-12 00:00:00

  • The canine renal parathyroid hormone receptor is a glycoprotein: characterization and partial purification.

    abstract::Covalent labeling of the canine renal parathyroid hormone receptor with [125I]bPTH(1-34) reveals several major binding components that display characteristics consistent with a physiologically relevant adenylate cyclase linked receptor. Through the use of the specific glycosidases neuraminidase and endoglycosidase F a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00398a044

    authors: Karpf DB,Arnaud CD,King K,Bambino T,Winer J,Nyiredy K,Nissenson RA

    更新日期:1987-12-01 00:00:00

  • Elimination of the hydrolytic water molecule in a class A beta-lactamase mutant: crystal structure and kinetics.

    abstract::Two site-directed mutant enzymes of the class A beta-lactamase from Staphylococcus aureus PC1 were produced with the goal of blocking the site that in the native enzyme is occupied by the proposed hydrolytic water molecule. The crystal structures of these two mutant enzymes, N170Q and N170M, have been determined and r...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962242a

    authors: Zawadzke LE,Chen CC,Banerjee S,Li Z,Wäsch S,Kapadia G,Moult J,Herzberg O

    更新日期:1996-12-24 00:00:00

  • Effects of metal ligation and oxygen on the reversibility of the thermal denaturation of Pseudomonas aeruginosa azurin.

    abstract::Thermodynamic equilibrium transition models in DSC are only applicable to reversible processes, but reversibility of the thermal transitions of proteins is comparatively rare because of intermolecular aggregation of denatured proteins and the degradation that occurs at high temperatures. The cupredoxin azurin from Pse...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0157621

    authors: Sandberg A,Leckner J,Shi Y,Schwarz FP,Karlsson BG

    更新日期:2002-01-22 00:00:00

  • Identification of catalytic residues in the As(III) S-adenosylmethionine methyltransferase.

    abstract::The enzyme As(III) S-adenosylmethionine methyltransferase (EC 2.1.1.137) (ArsM or AS3MT) is found in members of every kingdom, from bacteria to humans. In these enzymes, there are three conserved cysteine residues at positions 72, 174, and 224 in the CmArsM orthologue from the thermophilic eukaryotic alga Cyanidioschy...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201500c

    authors: Marapakala K,Qin J,Rosen BP

    更新日期:2012-02-07 00:00:00

  • Chemical Inhibitors of Epigenetic Methyllysine Reader Proteins.

    abstract::Protein methylation is a common post-translational modification with diverse biological functions. Methyllysine reader proteins are increasingly a focus of epigenetics research and play important roles in regulating many cellular processes. These reader proteins are vital players in development, cell cycle regulation,...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.5b01073

    authors: Milosevich N,Hof F

    更新日期:2016-03-22 00:00:00