Modern methods to produce natural-product libraries.

Abstract:

:Natural sources offer a wealth of chemically diverse compounds that have been evolutionary preselected to modulate biochemical pathways. Several industrial and academic groups are accessing this source using advanced technology platforms. Methods have been reported to generate large and diverse natural-product libraries optimised for high-throughput screening and for a fast discovery process. In addition to prefractionated and pure natural-product libraries, parallel synthesis gives access to synthetic, semi-synthetic and natural-product-like libraries. Natural-product chemistry and organic synthesis are powerful tools for optimising natural leads and for generating new diversity from natural scaffolds. The amalgamation of both may be expected to become an important strategy in future drug design.

journal_name

Curr Opin Chem Biol

authors

Abel U,Koch C,Speitling M,Hansske FG

doi

10.1016/s1367-5931(02)00338-1

subject

Has Abstract

pub_date

2002-08-01 00:00:00

pages

453-8

issue

4

eissn

1367-5931

issn

1879-0402

pii

S1367593102003381

journal_volume

6

pub_type

杂志文章,评审
  • Chemical 'omics' approaches for understanding protein cysteine oxidation in biology.

    abstract::Oxidative cysteine modifications have emerged as a central mechanism for dynamic post-translational regulation of all major protein classes and correlate with many disease states. Elucidating the precise roles of cysteine oxidation in physiology and pathology presents a major challenge. This article reviews the curren...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2010.11.012

    authors: Leonard SE,Carroll KS

    更新日期:2011-02-01 00:00:00

  • Activity-based proteomics: enzyme chemistry redux.

    abstract::The principles of enzyme chemistry, mechanism of action and inhibitor design are being applied to proteomics by the development of activity-based probes. This approach suggests a potentially broad method for interrogating enzyme family members, both known and unknown, in cells and proteomic fractions without the need ...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(02)00013-3

    authors: Kozarich JW

    更新日期:2003-02-01 00:00:00

  • Computational protein design.

    abstract::The field of computational protein design is reaching its adolescence. Protein design algorithms have been applied to design or engineer proteins that fold, fold faster, catalyze, catalyze faster, signal, and adopt preferred conformational states. Further developments of scoring functions, sampling strategies, and opt...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(01)00267-8

    authors: Kraemer-Pecore CM,Wollacott AM,Desjarlais JR

    更新日期:2001-12-01 00:00:00

  • Traceless and multifunctional linkers for the generation of small molecules on solid supports.

    abstract::Numerous developments in useful linkers are closely related with the advances in solid-phase organic synthesis. These linkers allow facile attachment functionalization and release molecules of interest. Designing a new anchoring group can be essential for synthesis success, especially for small molecules on solid supp...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2004.04.004

    authors: Gil C,Bräse S

    更新日期:2004-06-01 00:00:00

  • Combinatorial synthetic design.

    abstract::The range and diversity of solid-phase synthetic methodology continues to develop very rapidly, allowing the generation of previously inaccessible compound libraries. The design of such libraries requires consideration of linkage strategies, newly developed solid-phase reactions and emerging solution-phase processes. ...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/S1367-5931(99)80046-5

    authors: Oliver SF,Abell C

    更新日期:1999-06-01 00:00:00

  • Structure-directed combinatorial library design.

    abstract::In recent years pharmaceutical companies have utilized structure-based drug design and combinatorial library design techniques to speed up their drug discovery efforts. Both approaches are routinely used in the lead discovery and lead optimization stages of the drug discovery process. Fragment-based drug design, a new...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2008.02.007

    authors: Zhou JZ

    更新日期:2008-06-01 00:00:00

  • Optimizing non-natural protein function with directed evolution.

    abstract::Developing technologies such as unnatural amino acid mutagenesis, non-natural cofactor engineering, and computational design are generating proteins with novel functions; these proteins, however, often do not reach performance targets and would benefit from further optimization. Evolutionary methods can complement the...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2010.11.020

    authors: Brustad EM,Arnold FH

    更新日期:2011-04-01 00:00:00

  • Protein sequence databases.

    abstract::A variety of protein sequence databases exist, ranging from simple sequence repositories, which store data with little or no manual intervention in the creation of the records, to expertly curated universal databases that cover all species and in which the original sequence data are enhanced by the manual addition of ...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2003.12.004

    authors: Apweiler R,Bairoch A,Wu CH

    更新日期:2004-02-01 00:00:00

  • Preinitation complex assembly: potentially a bumpy path.

    abstract::During 1996 and 1997, several chemical issues that arise in the early stages of preinitiation complex (PIC) formation were resolved. Kinetics experiments indicated that both TBP dimerization and DNA bending influence the rate of TBP-TATA box assembly. Affinity cleavage experiments indicated that TBP lacks the specific...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(98)80030-6

    authors: Cox JM,Kays AR,Sanchez JF,Schepartz A

    更新日期:1998-02-01 00:00:00

  • Coupled motions in enzyme catalysis.

    abstract::Recently, the hypothesis that protein motions are involved in enzymatic turnover has gained significant attention. We review cases where there is evidence that protein motions are rate-limiting in the overall catalytic cycle and examine experimental and theoretical evidence for how such motions enhance the probability...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2010.07.020

    authors: Nashine VC,Hammes-Schiffer S,Benkovic SJ

    更新日期:2010-10-01 00:00:00

  • Quantitative chemical imaging with stimulated Raman scattering microscopy.

    abstract::Chemical imaging plays an increasingly important role in studying heterogeneous biological systems. It combines molecular spectroscopy with high-resolution spatial information to create quantitative images of molecular distributions. Here I summarize recent progress in technical developments and biological application...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2017.05.002

    authors: Fu D

    更新日期:2017-08-01 00:00:00

  • Optical spectroscopy for detection of neoplasia.

    abstract::Fluorescence and reflectance spectroscopy provide the ability to assess tissue structure and metabolism in vivo in real time, providing improved diagnosis of pre-cancerous lesions. Reflectance spectroscopy can probe changes in epithelial nuclei that are important in pre-cancer detection, such as mean nuclear diameter,...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(02)00381-2

    authors: Sokolov K,Follen M,Richards-Kortum R

    更新日期:2002-10-01 00:00:00

  • Enzymes with extra talents: moonlighting functions and catalytic promiscuity.

    abstract::Recent studies of moonlighting functions and catalytic promiscuity provide insights into the structural and mechanistic bases of these phenomena. Moonlighting proteins that are highlighted include gephyrin, the Neurospora crassa tyrosyl tRNA synthetase, phosphoglucose isomerase, and cytochrome c. New insights into cat...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(03)00032-2

    authors: Copley SD

    更新日期:2003-04-01 00:00:00

  • Synthetic approaches towards structurally diverse gamma-butyrolactone natural-product-like compounds.

    abstract::Natural products containing a gamma-butyrolactone ring are abundant in nature; however, few general synthetic approaches to their stereoselective synthesis with broad structural variety are known. In this article, recent developments towards mono- and polycyclic gamma-butyrolactone natural products and analogs are dis...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2005.03.005

    authors: Seitz M,Reiser O

    更新日期:2005-06-01 00:00:00

  • Chemotherapeutic potential of phosphodiesterase inhibitors.

    abstract::The application of molecular cloning has revealed the phenomenal diversity and complexity of the phosphodiesterase isoenzyme family. Thus, more than 30 human phosphodiesterases are now known; all are apparently necessary for the seemingly simple task of hydrolysing the 3'-ester bond of either cyclic adenosine monophos...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(98)80123-3

    authors: Perry MJ,Higgs GA

    更新日期:1998-08-01 00:00:00

  • Fresh insight to functioning of selected enzymes of the nitrogen cycle.

    abstract::The global nitrogen cycle is the process in which different forms of environmental N are interconverted by microorganisms either for assimilation into biomass or in respiratory energy-generating pathways. This short review highlights developments over the last 5 years in our understanding of functionality of nitrogena...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2016.02.009

    authors: Eady RR,Antonyuk SV,Hasnain SS

    更新日期:2016-04-01 00:00:00

  • Isotope-edited IR spectroscopy for the study of membrane proteins.

    abstract::Fourier transform infrared (FTIR) spectroscopy has long been a powerful tool for structural analysis of membrane proteins. However, because of difficulties in resolving contributions from individual residues, most of the derived measurements tend to yield average properties for the system under study. Isotope editing,...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2006.08.013

    authors: Arkin IT

    更新日期:2006-10-01 00:00:00

  • Nucleic-acid-templated synthesis as a model system for ancient translation.

    abstract::The translation of nucleic acids into synthetic structures with expanded functional potential has been the subject of considerable research, with applications including small-molecule and polymer evolution, reaction discovery and sensing. Here, we review properties of nucleic-acid-templated synthesis in the context of...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2004.09.003

    authors: Calderone CT,Liu DR

    更新日期:2004-12-01 00:00:00

  • Accessory factor-bZIP-DNA interactions.

    abstract::DNA binding and transcriptional activation by basic region leucine zipper (bZIP) proteins can be enhanced by accessory factors. In the past year, three accessory factor-bZIP-DNA complexes have been investigated extensively. Experiments have probed the effect of accessory factors on bZIP-DNA specificity, the residues t...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(98)80031-8

    authors: Baranger AM

    更新日期:1998-02-01 00:00:00

  • Biocatalytic hydrogen atom transfer: an invigorating approach to free-radical reactions.

    abstract::Initiating and terminating free-radical reactionis via hydrogen atom transfer (HAT) is an attractive means of avoiding substrate prefunctionalization. Small molecule catalysts and reagents, however, struggle to execute this fundamental step with useful levels of diastereoselectivity and enantioselectivity. In contrast...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2018.09.001

    authors: Nakano Y,Biegasiewicz KF,Hyster TK

    更新日期:2019-04-01 00:00:00

  • New methods in combinatorial chemistry-robotics and parallel synthesis.

    abstract::Technological advances in the automation of parallel synthesis are following the model set by the semiconductor industry: miniaturization, increasing speed, lower costs. Recent work includes preparation of high-density reaction blocks, development of ink-jet dispensing to polypropylene sheets and synthesis inside cust...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(97)80110-x

    authors: Cargill JF,Lebl M

    更新日期:1997-06-01 00:00:00

  • Glycomics meets genomics, epigenomics and other high throughput omics for system biology studies.

    abstract::Majority of eukaryotic proteins are glycosylated and their glycan moieties have numerous important structural, functional and regulatory roles. Because of structural complexity of glycans and technological limitations glycomics, and particularly glycoproteomics was not able to follow rapid progress in genomics and pro...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2012.12.007

    authors: Zoldoš V,Horvat T,Lauc G

    更新日期:2013-02-01 00:00:00

  • The discovery of catalytically active peptides through combinatorial chemistry.

    abstract::In recent years, ogliopeptides have enjoyed ever increasing interest in two areas: first, approaches to biomimetic enzyme-like activity; and second, as metal-free catalysts for enantioselective transformations of synthetic interest. The discovery and optimization of peptides for these purposes has often used the metho...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(03)00065-6

    authors: Berkessel A

    更新日期:2003-06-01 00:00:00

  • Unlocked potential of dynamic elements in protein structures: channels and loops.

    abstract::Enzymes are nature's powerful catalytic proteins to perform reactions with often outstanding activity, selectivity and specificity. Moreover, the access to non-natural functions of biocatalysts can be facilitated by enzyme engineering. While rational approaches are often focused on an enzyme's active site, from random...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2018.09.010

    authors: Kreß N,Halder JM,Rapp LR,Hauer B

    更新日期:2018-12-01 00:00:00

  • Peroxynitrite: reactive, invasive and enigmatic.

    abstract::The reactive oxygen and nitrogen species superoxide ion, nitric oxide, nitrogen dioxide and peroxynitrite ion all react with biological target molecules. Some of these interactions are carefully orchestrated segments of signal transduction cascades or part of the armamentarium of the immune system, others are patholog...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/S1367-5931(99)80036-2

    authors: Groves JT

    更新日期:1999-04-01 00:00:00

  • Protein interactions with surfaces: Computational approaches and repellency.

    abstract::Study of protein adsorption to solid surfaces continues to be substantial because of its role in cellular responses to biomaterials, interest in molecular aspects such as conformation and orientation, new methods for making protein repellent surfaces, and new application areas such as nanoparticles and microfluidics. ...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2011.04.016

    authors: Szott LM,Horbett TA

    更新日期:2011-10-01 00:00:00

  • How good is your screening library?

    abstract::Efficient library design is an ongoing challenge for investigators seeking novel ligands for proteins, whether for drug discovery or chemical biology. Strategies that add neglected chemistry or exclude unproductive compounds are two dominant recent themes, as is a growing awareness of molecular complexity and its impl...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2006.06.003

    authors: Irwin JJ

    更新日期:2006-08-01 00:00:00

  • NMR structure determination of proteins and protein complexes larger than 20 kDa.

    abstract::Recent advances in multidimensional nuclear magnetic resonance methodology to obtain 1H, 15N and 13C resonance assignments, interproton distance and torsion angle restraints, and restraints that characterize long-range order, coupled with new methods of structure refinement and novel methods for reducing linewidths, h...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(98)80084-7

    authors: Clore GM,Gronenborn AM

    更新日期:1998-10-01 00:00:00

  • Peptide modification and cyclization via transition-metal catalysis.

    abstract::Transition-metal catalysis has unlocked new paradigms for the late-stage modification and cyclization of peptides by harnessing the innate reactivity of proteinogenic amino acids. The field is rapidly evolving, with recent advances encompassing three fundamental areas-heteroatom couplings, decarboxylative cross-coupli...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2018.03.019

    authors: Malins LR

    更新日期:2018-10-01 00:00:00

  • Metabolic engineering strategies toward production of biofuels.

    abstract::Exacerbation of climate change and air pollution around the world have emphasized the necessity of replacing fossil fuels with clean and sustainable energy. Metabolic engineering has provided strategies to engineer diverse organisms for the production of biofuels from renewable carbon sources. Although some of the pro...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2020.02.009

    authors: Choi KR,Jiao S,Lee SY

    更新日期:2020-12-01 00:00:00