Interaction of processes on different length scales in a bioelastomer capable of performing energy conversion.

Abstract:

:This work concerns the aggregation properties of (Gly-Val-Gly-Val-Pro)(251) rec, a polypentapeptide reflecting a highly conserved repetitive unit of the bioelastomer, elastin. On raising the temperature of aqueous solutions above 25 degrees C, this polypeptide was already known to undergo concurrent conformational changes (hydrophobic folding), phase separation, and self-assembly with formation of aggregated three-stranded filaments composed of dynamic polypeptide helices, called beta-spirals. Aggregates obtained from the solution can be shaped into bands that acquire entropic elastic properties upon gamma-irradiation and can perform a variety of energy conversions. Previous studies have shown that aggregation is prompted by the (diverging) critical fluctuations of concentration occurring in the solution, in vicinity of its spinodal line. Here, we present combined circular dicroism (CD) and light scattering experiments, and independent fittings of experimental data to the theoretical spinodal and binodal (coexistence) lines. Results show the following logical and causal sequence of processes: (a) Smooth and progressive conformational changes promoted by concentration fluctuations occurring as temperature is raised "pull down" (in the temperature scale) the instability region of the solution. (b) This further promotes critical fluctuations. (c) The related locally high concentration prompts a further substantial conformational change ending in triple-helix formation and coacervation. (d) This intertwining of processes, covering different length scales (from that of individual peptides to the mesoscopic one of demixed regions), is related to the fact that solvent-induced interactions play a strong role over the entire scale span. These results concur with other recent ones in pointing out that process interactions over many length-scales probably reflect a frequent if not ubiquitous pattern in protein aggregation. This may be highly relevant to the desirable deep understanding of such phenomenon, whose interests cover many fields.

journal_name

Biopolymers

journal_title

Biopolymers

authors

Manno M,Emanuele A,Martorana V,San Biagio PL,Bulone D,Palma-Vittorelli MB,McPherson DT,Xu J,Parker TM,Urry DW

doi

10.1002/1097-0282(200107)59:1<51::AID-BIP1005>3.0.

subject

Has Abstract

pub_date

2001-07-01 00:00:00

pages

51-64

issue

1

eissn

0006-3525

issn

1097-0282

pii

10.1002/1097-0282(200107)59:1<51::AID-BIP1005>3.0.

journal_volume

59

pub_type

杂志文章
  • A quantum-dynamics study of the prototropic tautomerism of guanine and its contribution to spontaneous point mutations in Escherichia coli.

    abstract::High-level quantum-chemical and quantum-dynamics calculations are reported on the tautomerization equilibrium and rate constants of guanine and its complexes with one and two water molecules. The results are used to estimate the fraction of guanine present in the cell during DNA synthesis as the unwanted tautomer that...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/1097-0282(2001)61:1<77::AID-BIP10062>3.0.C

    authors: Gorb L,Podolyan Y,Leszczynski J,Siebrand W,Fernández-Ramos A,Smedarchina Z

    更新日期:2001-01-01 00:00:00

  • Solid-phase synthesis of second-generation polyproline dendrimers.

    abstract::Second-generation dendrimers have been prepared on solid phase by successive additions of branched polyproline building blocks starting from two different branching units anchored to the solid support. The preparation of Pro-rich building blocks was carried out by stepwise solid-phase synthesis and their iterative add...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20125

    authors: Sanclimens G,Crespo L,Giralt E,Royo M,Albericio F

    更新日期:2004-01-01 00:00:00

  • Electronic properties of tetrathiafulvalene-modified cyclic-β-peptide nanotube.

    abstract::Cyclic tri-β-peptide having tetrathiafulvalene (TTF) at the side chain was synthesized to prepare a peptide nanotube aligning TTF side chains along the nanotube. The polarized light microscopic observations revealed crystallization of the cyclic peptide by the vapor diffusion method. Fourier-transform infrared and ele...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22850

    authors: Uji H,Kim H,Imai T,Mitani S,Sugiyama J,Kimura S

    更新日期:2016-05-01 00:00:00

  • Evidence for a strong selenium-aromatic interaction derived from crystallographic data and ab initio quantum chemical calculations.

    abstract::Increasing attention is being paid to the role of selenium, both as an essential component required for the activity of many enzymes and in the context of selenium-based pharmaceutical agents. A wide range of therapeutics that include selenium are on the market and under development, such as antihypertensive, anticanc...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20592

    authors: Hartman I,Raia CA,Zauhar RJ

    更新日期:2006-12-15 00:00:00

  • Structure-activity studies of peptidomimetics based on kinase-inhibitory region of suppressors of cytokine signaling 1.

    abstract::Suppressors of Cytokine Signaling (SOCS) proteins are negative regulators of JAK proteins that are receptor-associated tyrosine kinases, which play key roles in the phosphorylation and subsequent activation of several transcription factors named STATs. Unlike the other SOCS proteins, SOCS1 and 3 show, in the N-termina...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.23082

    authors: La Manna S,Lopez-Sanz L,Leone M,Brandi P,Scognamiglio PL,Morelli G,Novellino E,Gomez-Guerrero C,Marasco D

    更新日期:2017-11-20 00:00:00

  • Rapid communication: Computational simulation and analysis of a candidate for the design of a novel silk-based biopolymer.

    abstract::This work theoretically investigates the mechanical properties of a novel silk-derived biopolymer as polymerized in silico from sericin and elastin-like monomers. Molecular Dynamics simulations and Steered Molecular Dynamics were the principal computational methods used, the latter of which applies an external force o...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22494

    authors: Golas EI,Czaplewski C

    更新日期:2014-09-01 00:00:00

  • Challenges in mass spectrometry-based quantification of bioactive peptides: a case study exploring the neuropeptide Y family.

    abstract::The study of biologically active peptides is critical to the understanding of physiological pathways, especially those involved in the development of disease. Historically, the measurement of biologically active endogenous peptides has been undertaken by radioimmunoassay, a highly sensitive and robust technique that p...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22109

    authors: Xi L,Jin Y,Parker EA,Josh P,Jones A,Wijffels G,Colgrave ML

    更新日期:2012-01-01 00:00:00

  • Effect of biogenic amines on oxidation of farmorubicin by Fenton-like reagents.

    abstract::The aim of this study was to investigate the effect of dopa and catecholamines on the generation of oxygen active species during oxidation of farmorubicin by "Fenton-like" reagents using chemiluminescent and spectrophotometric techniques. The tested catechols were found to reduce the light emission accompanying oxidat...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10161

    authors: Kruk I,Lichszteld K,Aboul-Enein HY

    更新日期:2002-01-01 00:00:00

  • Synthesis, and crystal and molecular structure of the 3(10)-helical alpha,beta-dehydro pentapeptide Boc-Leu-Phe-Ala-delta Phe-Leu-OMe.

    abstract::alpha,beta-Dehydro amino acid residues are known to constrain the peptide backbone to the beta-bend conformation. A pentapeptide containing only one alpha,beta-dehydrophenylalanine (delta Phe) residue has been synthesized and crystallized, and its solid state conformation has been determined. The pentapeptide Boc-Leu-...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360350202

    authors: Rajashankar KR,Ramakumar S,Mal TK,Jain RM,Chauhan VS

    更新日期:1995-02-01 00:00:00

  • SAR study and conformational analysis of a series of novel peptide G protein-coupled receptor kinase 2 inhibitors.

    abstract::G protein-coupled receptor kinase 2 (GRK2) plays a central role in the cellular transduction network. In particular, during chronic heart failure GRK2 is upregulated and believed to contribute to disease progression. Thereby, its inhibition offers a potential therapeutic solution to several pathological conditions. In...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22295

    authors: Gomez-Monterrey I,Carotenuto A,Cipolletta E,Sala M,Vernieri E,Limatola A,Bertamino A,Musella S,Grieco P,Trimarco B,Novellino E,Iaccarino G,Campiglia P

    更新日期:2014-01-01 00:00:00

  • Solution structure of nocistatin, a new peptide analgesic.

    abstract::Nocistatin, a new heptadecapeptide encoded in the bPNP-3 gene, has a powerful biological activity connected with the mechanisms of pain transmission. It does not bind to the opioid receptors but to another brain receptor with high affinity. In order to substantiate these novel biological data with a structural basis, ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0282(200003)53:3<257::AID-BIP5>

    authors: Crescenzi O,Guerrini R,Picone D,Salvadori S,Tancredi T,Temussi PA

    更新日期:2000-03-01 00:00:00

  • The use of spectral decomposition via the convex constraint algorithm in interpreting the CD-observed unfolding transitions of coiled coils.

    abstract::Decomposition of CD spectra for the unfolding of both coiled-coil and single-helical molecules is carried out via the convex constraint algorithm (CCA) [A. Perczel, M. Hollósi, G. Tusnády, and G. D. Fasman (1991) Protein Engineering, Vol. 4, pp. 669-679]. Examined are (1) our thermal unfolding data for rabbit alpha al...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360360310

    authors: Holtzer ME,Holtzer A

    更新日期:1995-09-01 00:00:00

  • Nano-mechanical characterization of disassembling amyloid fibrils using the Peak Force QNM method.

    abstract::The comprehensive understanding of disassembly mechanism of amyloid fibrils requires nano-scale characterization of the mechanical properties of amyloid fibrils during the disassembly process. In this work, gemini surfactant C12 C6 C12 Br2 micelles were used as a probe to disassemble Aβ(1-40) fibrils. The microstructu...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22992

    authors: Wang W,Guo Z,Sun J,Li Z

    更新日期:2017-02-01 00:00:00

  • PEGylated PAMAM dendrimers loading oxaliplatin with prolonged release and high payload without burst effect.

    abstract::Oxaliplatin (OXA) was coupled to PEGylated polyamidoamine dendrimers of fourth generation (G4-PEG@OXA) in the comparison to PEGylated ones of odd generation (G3.5-PEG@OXA). Proton nuclear magnetic resonance and Fourier-transform infrared spectroscopy were used to confirm the successful incorporation of OXA as well as ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.23272

    authors: Ho MN,Bach LG,Nguyen DH,Nguyen CH,Nguyen CK,Tran NQ,Nguyen NV,Hoang Thi TT

    更新日期:2019-07-01 00:00:00

  • A 23Na-NMR study of sodium-DNA interactions in concentrated DNA solutions at low-supporting electrolyte concentration.

    abstract::Aqueous solutions of DNA fragments with a contour length (500 A) near the persistence length at DNA concentrations ranging from 10 to 290 mg/mL solvent and a constant supporting electrolyte concentration of 0.01 M (predominantly NaCl) were examined by 23Na-nmr spectroscopy at temperatures of 20, 40, and 60 degrees C. ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360300715

    authors: Strzelecka TE,Rill RL

    更新日期:1990-01-01 00:00:00

  • Study of tumor cell invasion by Fourier transform infrared microspectroscopy.

    abstract::Lung cancer is usually fatal once it becomes metastatic. However, in order to develop metastases, a tumor usually invades the basal membrane and enters the vascular or lymphatic system. In this study, a three-dimensional artificial membrane using collagen type I, one of the main components of basal membranes, was esta...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20297

    authors: Yang Y,Sulé-Suso J,Sockalingum GD,Kegelaer G,Manfait M,El Haj AJ

    更新日期:2005-08-15 00:00:00

  • FTIR microspectroscopy study of composition fluctuations in extruded amylopectin-gelatin blends.

    abstract::The spatial variation in the composition of nonexpanded biopolymer blends prepared by extrusion of mixtures of gelatin with either native or pregelatinized waxy maize starch was studied using a 30-microm aperture FTIR microspectroscopy technique. The ratio of the areas of the "saccharide" bands (953-1180 cm(-1)) and t...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.1015

    authors: Mousia Z,Farhat IA,Pearson M,Chesters MA,Mitchell JR

    更新日期:2001-01-01 00:00:00

  • Investigation of stretching vibrations of glycosidic linkages in disaccharides and polysaccharides with use of IR spectra deconvolution.

    abstract::The results are presented for the deconvolution of IR spectra of disaccharides and polysaccharides with alpha and beta configurations of the 1 --> 4 glycosidic linkage (maltose, cellobiose, amylose, and cellulose), as well as of their corresponding monosaccharides (alpha- and beta-D-glucose) in the 1200-920 cm(-1) fre...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/1097-0282(2000)57:4<257::AID-BIP7>3.0.CO;2

    authors: Nikonenko NA,Buslov DK,Sushko NI,Zhbankov RG

    更新日期:2000-01-01 00:00:00

  • Gold nanoparticles crosslinking by peptides and amino acids: A tool for the colorimetric identification of amino acids.

    abstract::Gold nanoparticles are known to aggregate in the presence of proper multifunctional compounds. For those larger than 3 nm, the process can be followed with the naked eye because the surface plasmon absorption band of the particles shifts to longer wavelengths and the solution color changes from red to blue. To exploit...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.23111

    authors: Martínez Á,Scrimin P

    更新日期:2018-08-01 00:00:00

  • Time-resolved fluorescence resonance energy transfer studies of DNA bending in double-stranded oligonucleotides and in DNA-protein complexes.

    abstract::Time-resolved Förster resonance energy transfer (trFRET) has been used to obtain interdye distance distributions. These distributions give the most probable distance as well as a parameter, sigma, that characterize the width of the distribution. This latter parameter contains information not only on the flexibility of...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.10138

    authors: Parkhurst LJ,Parkhurst KM,Powell R,Wu J,Williams S

    更新日期:2001-01-01 00:00:00

  • Surface-enhanced Raman spectroscopy of DOPA-containing peptides related to adhesive protein of marine mussel, Mytilus edulis.

    abstract::The common blue marine mussel adheres to underwater surfaces using an adhesive protein (Mefp-1) extruded from its foot. This highly hydroxylated protein contains a number of unusual amino acids, including 3,4-dihydroxyphenylalanine (DOPA), which is thought to contribute to the crosslinking of the extruded threads and ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0282(2000)57:2<92::AID-BIP6>3.0

    authors: Akemi Ooka A,Garrell RL

    更新日期:2000-01-01 00:00:00

  • CD spectral study of Dnp derivatives of amino acids and peptides for their configurational and conformational analysis.

    abstract::Rules relating the stereochemistry of N-Dnp (Dnp: 2,4-dinitrophenyl) derivatives of alpha-amino acids and peptides and the sign of the Cotton effects at the longest wavelength band (ca. 400 nm) are surveyed. Some new data and insights concerning the CD spectra of Dnp-alpha-amino acids are included: i.e., the spectra o...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20198

    authors: Kawai M,Nagai U,Inai Y,Yamamura H,Akasaka R,Takagi S,Miwa Y,Taga T

    更新日期:2005-01-01 00:00:00

  • Application of a chaperone-based refolding method to two- and three-dimensional off-lattice protein models.

    abstract::A model of protein-chaperone interaction as a two-phase (unfolding/refolding) iterative annealing mechanism able to promote structural segregation of hydrophobic and hydrophilic monomers and thereby facilitate access to nativelike states has recently been applied successfully to two 22-mers of the Honeycutt and Thirum...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10148

    authors: Gorse D

    更新日期:2002-07-15 00:00:00

  • Effects of segment substitution on the structure and stability of immunoglobulin G binding domain of streptococcal protein G.

    abstract::Structural formation of segments plays pivotal roles in protein folding and stability, but how the segment influences the structural ensemble remains elusive. We engineered two hybrid proteins by replacing the central helical segment of immunoglobulin G binding domain of streptococcal protein G with an alpha-helix or ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20283

    authors: Du HN,Zhang TY,Chang YG,Lin DH,Hu HY

    更新日期:2005-09-01 00:00:00

  • External reversible control of recognition behavior of alpha-peptide ribonucleic acid (alpha-PRNA) through anti-syn orientational switching of the nucleobase induced by borate esterification of the cis-2',3'-diol.

    abstract::A novel nucleic acid model using peptide ribonucleic acid (PRNA), which contains 5'-amino-5'-deoxypyrimidine ribonucleoside as a recognition site for nucleic acids, has been designed, synthesized and applied to the external reversible control of recognition behavior of the complementary polynucleotide through the orie...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10563

    authors: Wada T,Sato H,Inoue Y

    更新日期:2004-01-01 00:00:00

  • Chemical and functional diversity of small molecule ligands for RNA.

    abstract::Functional RNAs such as ribosomal RNA and structured domains of mRNA are targets for small molecule ligands that can act as modulators of the RNA biological activity. Natural ligands for RNA display a bewildering structural and chemical complexity that has yet to be matched by synthetic RNA binders. Comparison of natu...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.10410

    authors: Hermann T

    更新日期:2003-09-01 00:00:00

  • Evidence of hemoglobin dissociation.

    abstract::Bovine carbonmonoxy hemoglobin investigated with light scattering studies is found to dissociate from its native tetramer structure into dimers and monomers. The values of the hydrated tetramer radius, RT = 32.1 A, and the fractional dissociation vs pH, have been obtained at different ionic strengths from the autocorr...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360340607

    authors: Lunelli L,Zuliani P,Baldini G

    更新日期:1994-06-01 00:00:00

  • Configurational preference of pyrrolidine-based oxy-peptide nucleic acids as hybridization counterparts with DNA and RNA.

    abstract::A new series of oxy-peptide nucleic acids (pyrrolidine-based oxy-peptide nucleic acids = POPNAs) of four different stereoisomeric forms (cis-L, cis-D, trans-L, trans-D) have been synthesized. To find a favorable stereoisomer of POPNA for hybridization with DNA or RNA, thermodynamic parameters and conformations of the ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20364

    authors: Kitamatsu M,Shigeyasu M,Saitoh M,Sisido M

    更新日期:2006-01-01 00:00:00

  • From natural to synthetic multisite thrombin inhibitors.

    abstract::A large number of potent and selective therapeutic agents, useful for the treatment of several diseases, have been isolated from natural sources. For example, the most active thrombin inhibitors are those secreted by the salivary glands of leeches. One peculiar feature of these agents is the lack of any significant in...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0282(1999)51:1<19::AID-BIP4>3.0

    authors: Lombardi A,De Simone G,Galdiero S,Staiano N,Nastri F,Pavone V

    更新日期:1999-01-01 00:00:00

  • Modeling DNA deformations induced by minor groove binding proteins.

    abstract::Molecular modeling is used to demonstrate that the major structural deformations of DNA caused by four different minor groove binding proteins, TBP, SRY, LEF-1, and PurR, can all be mimicked by stretching the double helix between two 3'-phosphate groups flanking the binding region. This deformation reproduces the wide...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0282(19990415)49:5<341::AID-BIP

    authors: Lebrun A,Lavery R

    更新日期:1999-04-15 00:00:00