Probing the heme axial ligation in the CO-sensing CooA protein with magnetic circular dichroism spectroscopy.

Abstract:

:The combination of UV/visible/near-IR variable-temperature magnetic circular dichroism (VTMCD) and EPR spectroscopies has been used to investigate the spin states and axial ligation of the heme group in oxidized, reduced, and CO-bound reduced forms of the Rhodospirillum rubrum CO oxidation transcriptional activator protein (CooA) and its H77Y and C75S variants. The energy of the porphyrin(pi)-to-Fe(III) charge-transfer band (8930 cm(-)(1)) and the presence of cysteinate S-to-Fe(III) charge-transfer bands between 600 and 700 nm confirm cysteinate axial ligation to the low-spin Fe(III) hemes in oxidized wild-type and H77Y CooA. In contrast, the major component in the oxidized C75S variant is shown to be a low-spin Fe(III) heme with bis-histidine or histidine/amine axial ligation on the basis of the energy of the porphyrin(pi)-to-Fe(III) charge-transfer band (6240 cm(-)(1)) and the anisotropy of the EPR signal, g = 3.23, approximately 2.06, approximately 1.14. These results confirm Cys75 as the cysteinyl axial ligand in oxidized CooA, indicate that it is replaced as an axial ligand by a histidine in the C75S variant, and reveal the presence of a hitherto unidentified histidine or neutral nitrogen ligand trans to Cys75 in wild-type CooA. Evidence for a Cys75-to-His77 axial ligand switch on reduction of CooA comes from VTMCD studies of the reduced proteins. The VTMCD spectra of reduced wild-type and C75S CooA are dominated by bands characteristic of bis-histidine low-spin Fe(II) hemes, whereas the reduced H77Y variant is predominantly high-spin with MCD characteristics typical of a five-coordinate, histidine-ligated ferrous heme. VTMCD studies show that the CO-bound reduced forms of wild-type, H77Y, and C75S contain low-spin Fe(II) hemes and that the Fe-CO bonds can be photolytically cleaved at temperatures <50 K. Strong evidence that CO binding to the heme group in reduced CooA occurs with displacement of His77 comes from the VTMCD spectra of the low-temperature photoproducts of CO-bound reduced forms of wild-type, H77Y, and C75S CooA. The spectra are almost identical to each other and closely correspond to those of the low-temperature photoproducts of well characterized CO-bound ferrous hemes with His/CO axial ligation.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Dhawan IK,Shelver D,Thorsteinsson MV,Roberts GP,Johnson MK

doi

10.1021/bi991303c

subject

Has Abstract

pub_date

1999-09-28 00:00:00

pages

12805-13

issue

39

eissn

0006-2960

issn

1520-4995

pii

bi991303c

journal_volume

38

pub_type

杂志文章
  • Increase in vesicle permeability mediated by myelin basic protein: effect of phosphorylation of basic protein.

    abstract::The two most basic charge isomers of myelin basic protein (BP), components 1 and 2 (C1 and C2), which presumably differ in the degree of deamidation, were purified from bovine BP by cation-exchange chromatography. Two additional specific types of posttranslational modifications were introduced into the purified isomer...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00340a032

    authors: Cheifetz S,Boggs JM,Moscarello MA

    更新日期:1985-09-10 00:00:00

  • Dissociation of apolipoprotein E oligomers to monomer is required for high-affinity binding to phospholipid vesicles.

    abstract::The apolipoprotein apoE plays a key role in cholesterol and lipid metabolism. There are three isoforms of this protein, one of which, apoE4, is the major risk factor for Alzheimer's disease. At micromolar concentrations all lipid-free apoE isoforms exist primarily as monomers, dimers, and tetramers. However, the molec...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1020106

    authors: Garai K,Baban B,Frieden C

    更新日期:2011-04-05 00:00:00

  • Fluorescence spectroscopic studies of pressure effects on Na+,K(+)-ATPase reconstituted into phospholipid bilayers and model raft mixtures.

    abstract::To contribute to the understanding of membrane protein function upon application of pressure as relevant for understanding, for example, the physiology of deep sea organisms or for baroenzymological biotechnical processes, we investigated the influence of hydrostatic pressure on the activity of Na+,K+-ATPase enriched ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi062235e

    authors: Powalska E,Janosch S,Kinne-Saffran E,Kinne RK,Fontes CF,Mignaco JA,Winter R

    更新日期:2007-02-13 00:00:00

  • Low-frequency dynamics of Caldariomyces fumago chloroperoxidase probed by femtosecond coherence spectroscopy.

    abstract::Ultrafast laser spectroscopy techniques are used to measure the low-frequency vibrational coherence spectra and nitric oxide rebinding kinetics of Caldariomyces fumago chloroperoxidase (CPO). Comparisons of the CPO coherence spectra with those of other heme species are made to gauge the protein-specific nature of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7025485

    authors: Gruia F,Ionascu D,Kubo M,Ye X,Dawson J,Osborne RL,Sligar SG,Denisov I,Das A,Poulos TL,Terner J,Champion PM

    更新日期:2008-05-06 00:00:00

  • Role of cysteine-82 in the catalytic mechanism of human S-adenosylmethionine decarboxylase.

    abstract::S-Adenosylmethionine decarboxylase is a pyruvate-dependent enzyme. The enzyme forms a Schiff base with substrate, S-adenosylmethionine, through the pyruvoyl moiety. This facilitates the release of CO2 from the substrate, which must then be protonated on the alpha carbon in order to permit hydrolysis of the Schiff base...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9825201

    authors: Xiong H,Stanley BA,Pegg AE

    更新日期:1999-02-23 00:00:00

  • 31P NMR studies of nucleotide storage in the dense granules of pig platelets.

    abstract::Detailed 31P NMR measurements have been conducted on pig platelet dense granules and aqueous mixtures of ATP, ADP, MgCl2, and 5HT. The resonance line widths of the dense granule nucleotides were temperature independent above approximately 30 degrees C; below this temperature they exhibit a strong temperature dependenc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00298a004

    authors: Uğurbil K,Fukami MH,Holmsen H

    更新日期:1984-01-31 00:00:00

  • Protein Synthesis with Ribosomes Selected for the Incorporation of β-Amino Acids.

    abstract::In an earlier study, β³-puromycin was used for the selection of modified ribosomes, which were utilized for the incorporation of five different β-amino acids into Escherichia coli dihydrofolate reductase (DHFR). The selected ribosomes were able to incorporate structurally disparate β-amino acids into DHFR, in spite of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00389

    authors: Maini R,Chowdhury SR,Dedkova LM,Roy B,Daskalova SM,Paul R,Chen S,Hecht SM

    更新日期:2015-06-16 00:00:00

  • Protoheme-carbon monoxide geminate kinetics.

    abstract::Recombination kinetics of CO to protoheme after laser photolysis have been measured vs. temperature and viscosity. A 25-ns laser pulse was focused on the sample to produce an excitation rate of 10(9)/s per heme. This temporarily populates the heme-CO state of dissociated pairs which either separate or recombine on a p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00358a008

    authors: Marden MC,Hazard ES 3rd,Gibson QH

    更新日期:1986-05-20 00:00:00

  • Cystic fibrosis transmembrane conductance regulator has an altered structure when its maturation is inhibited.

    abstract::Inefficient maturation and trafficking to the cell surface of the cystic fibrosis transmembrane conductance regulator (CFTR) is the primary cause of cystic fibrosis. CFTR protein that fails to mature accumulates as an immature core-glycosylated protein and is rapidly degraded. To determine how the structures of mature...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992620m

    authors: Chen EY,Bartlett MC,Clarke DM

    更新日期:2000-04-04 00:00:00

  • Inhibitors bound to Ca(2+)-free sarcoplasmic reticulum Ca(2+)-ATPase lock its transmembrane region but not necessarily its cytosolic region, revealing the flexibility of the loops connecting transmembrane and cytosolic domains.

    abstract::Ca2+-free crystals of sarcoplasmic reticulum Ca2+-ATPase have, up until now, been obtained in the presence of inhibitors such as thapsigargin (TG), bound to the transmembrane region of this protein. Here, we examined the consequences of such binding for the protein. We found that, after TG binding, an active site liga...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701855r

    authors: Montigny C,Picard M,Lenoir G,Gauron C,Toyoshima C,Champeil P

    更新日期:2007-12-25 00:00:00

  • Structural similarities between 6-methylsalicylic acid synthase from Penicillium patulum and vertebrate type I fatty acid synthase: evidence from thiol modification studies.

    abstract::6-Methylsalicylic acid synthase, the multifunctional enzyme complex that catalyzes the biosynthesis of the tetraketide 6-methylsalicylic acid, was modified by thiol-specific inhibitors and cross-linking reagents. Treatment with 1,3-dibromopropan-2-one caused rapid enzyme inactivation and formation of cross-linked dime...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960422e

    authors: Child CJ,Spencer JB,Bhogal P,Shoolingin-Jordan PM

    更新日期:1996-09-24 00:00:00

  • Carboxymethylproline synthase from Pectobacterium carotorova: a multifaceted member of the crotonase superfamily.

    abstract::The simplest carbapenem antibiotic, (5R)-carbapen-2-em-3-carboxylic acid, is biosynthesized from primary metabolites in Pectobacterium carotorova by the action of three enzymes, carboxymethylproline synthase (hereafter named CarB), carbapenam synthetase, and carbapenem synthase. CarB, a member of the crotonase superfa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0483662

    authors: Gerratana B,Arnett SO,Stapon A,Townsend CA

    更新日期:2004-12-21 00:00:00

  • Site-directed mutagenesis of highly conserved residues in helix VIII of subunit I of the cytochrome bo ubiquinol oxidase from Escherichia coli: an amphipathic transmembrane helix that may be important in conveying protons to the binuclear center.

    abstract::Cytochrome bo from Escherichia coli is a ubiquinol oxidase which is a member of the superfamily of heme-copper respiratory oxidases. This superfamily, which includes the eukaryotic cytochrome c oxidases, has in common a bimetallic center consisting of a high-spin heme component and a copper atom (CuB) which is the sit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00092a029

    authors: Thomas JW,Lemieux LJ,Alben JO,Gennis RB

    更新日期:1993-10-19 00:00:00

  • Membrane topology of the di- and tripeptide transport protein of Lactococcus lactis.

    abstract::Transport of hydrophilic di- and tripeptides into Lactococcus lactis is mediated by a proton motive force-driven peptide transport protein (DtpT) that shares similarity with eukaryotic peptide transporters, e.g., from kidney and small intestine of rabbit, man, and rat. Hydropathy profiling in combination with the "pos...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi963068t

    authors: Hagting A,vd Velde J,Poolman B,Konings WN

    更新日期:1997-06-03 00:00:00

  • Toward an understanding of the mechanism of nonphotochemical quenching in green plants.

    abstract::Oxygenic photosynthesis in plants involves highly reactive intermediates and byproducts that can damage the photosynthetic apparatus and other chloroplast constituents. The potential for damage is exacerbated when the amount of absorbed light exceeds the capacity for light energy utilization in photosynthesis, a condi...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi0494020

    authors: Holt NE,Fleming GR,Niyogi KK

    更新日期:2004-07-06 00:00:00

  • Interactions between model proteins and deoxyribonucleic acids.

    abstract::Interactions between DNA and model proteins, poly(L-Lys(m)L-Ala(n)), where m + n = 100%, have been investigated using thermal denaturation and circular dichroism (CD). All complexes of DNA with these proteins precipitate in a small range of input ratios, protein to DNA, with the midpoints of all precipitation curves c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00653a014

    authors: Pinkston MF,Ritter AH,Li HJ

    更新日期:1976-04-20 00:00:00

  • Ultraviolet resonance Raman spectra of insulin and alpha-lactalbumin with 218- and 200-nm laser excitation.

    abstract::Ultraviolet resonance Raman (RR) spectra, with 200- and 218-nm excitation from a H2-shifted quadrupled Nd:YAG laser, are reported for insulin and alpha-lactalbumin in dilute aqueous solution, at pH values known to produce differences in the exposure of the aromatic residues to solvent. At 200 nm, the spectra are domin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00329a009

    authors: Rava RP,Spiro TG

    更新日期:1985-04-09 00:00:00

  • Pump-1 cDNA codes for a protein with characteristics similar to those of classical collagenase family members.

    abstract::Pump-1 cDNA has recently been isolated by screening a human tumor cDNA library with a transin (rat stromelysin) probe under low-stringency hybridization conditions. The cDNA codes for a potential protein with significant sequence similarity to the metalloproteinases collagenase and stromelysin, but which lacks the hem...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00439a004

    authors: Quantin B,Murphy G,Breathnach R

    更新日期:1989-06-27 00:00:00

  • Tyr275 and Lys279 stabilize NADPH within the catalytic site of NADPH:protochlorophyllide oxidoreductase and are involved in the formation of the enzyme photoactive state.

    abstract::Fluorescence spectroscopic and kinetic analysis of photochemical activity, cofactor and substrate binding, and enzyme denaturation studies were performed with highly purified, recombinant pea NADPH:protochlorophyllide oxidoreductase (POR) heterologously expressed in Escherichia coli. The results obtained with an indiv...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0105025

    authors: Lebedev N,Karginova O,McIvor W,Timko MP

    更新日期:2001-10-23 00:00:00

  • Translation of collagen messenger RNA in a cell-free system derived from wheat germ.

    abstract::A cell-free system for synthesizing protein from wheat germ was used to translate the messenger RNA extracted from 16-day embryonic chick calvaria. A part of the product had properties similar to collagenous peptides and served as a substrate for prolyl hydroxylase, an enzyme specific for collagen. The level of potass...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00649a016

    authors: Benveniste K,Wilczek J,Ruggieri A,Stern R

    更新日期:1976-02-24 00:00:00

  • Orientation of paramagnetic probes attached to gizzard regulatory light chain bound to myosin heads in rabbit skeletal muscle.

    abstract::The orientation of the myosin neck was monitored using electron paramagnetic resonance (EPR) spectroscopy. Gizzard regulatory light chain was labeled with a nitroxide spin probe and exchanged for the native subunit, located in the myosin neck, in rabbit psoas muscle fibers. The EPR spectra of rigor fibers indicated a ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960505v

    authors: Zhao L,Gollub J,Cooke R

    更新日期:1996-08-06 00:00:00

  • DNA photolyase repairs the trans-syn cyclobutane thymine dimer.

    abstract::DNA photolyases catalyze the splitting of the cyclobutane ring joining the two dihydropyrimidines of a pyrimidine dimer by a photoinduced electron-transfer reaction. Previous studies concluded that photolyase repairs only the cis-syn form of the eight stereoisomers of the cyclobutane pyrimidine dimer (Pyr[ ]Pyr). In t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00079a001

    authors: Kim ST,Malhotra K,Smith CA,Taylor JS,Sancar A

    更新日期:1993-07-20 00:00:00

  • Fluorescence study of brevin, the Mr 92 000 actin-capping and -fragmenting protein isolated from serum. Effect of Ca2+ on protein conformation.

    abstract::The fluorescence characteristics of brevin and the effects of Ca2+ on the protein conformation were fully investigated. Brevin contains 18 tryptophans and 27 tyrosines. Analysis of the fluorescence spectra and the accessibility to quenching molecules indicate that the emitting tryptophans are located in a hydrophobic ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00341a055

    authors: Kilhoffer MC,Gérard D

    更新日期:1985-09-24 00:00:00

  • Analysis of substrate access to active sites in bacterial multicomponent monooxygenase hydroxylases: X-ray crystal structure of xenon-pressurized phenol hydroxylase from Pseudomonas sp. OX1.

    abstract::In all structurally characterized bacterial multicomponent monooxygenase (BMM) hydroxylase proteins, a series of hydrophobic cavities in the α-subunit trace a conserved path from the protein exterior to the carboxylate-bridged diiron active site. This study examines these cavities as a potential route for transport of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201248b

    authors: McCormick MS,Lippard SJ

    更新日期:2011-12-27 00:00:00

  • Redox enzyme engineering: conversion of human glutathione reductase into a trypanothione reductase.

    abstract::The substrate specificity of the human enzyme glutathione reductase was changed from its natural substrate glutathione to trypanothione [N1,N8-bis(glutathionyl)spermidine] by site-directed mutagenesis of two residues. The glutathione analogue, trypanothione, is the natural substrate for trypanothione reductase, an enz...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00239a006

    authors: Bradley M,Bücheler US,Walsh CT

    更新日期:1991-06-25 00:00:00

  • Transcription of the alpha2u-globulin gene in male rat liver nuclei in vitro.

    abstract::Alpha2u-globulin is a male rat liver protein under multihormonal control which represents approximately 1% of hepatic protein synthesis. We have measured the rate of transcription of the alpha2u-globulin gene using a nuclear cell-free transcriptional system with mercurated CTP as substrate for the endogenous RNA polym...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00608a023

    authors: Chan KM,Kurtz DT,Feigelson P

    更新日期:1978-07-25 00:00:00

  • Constitutive activation of opsin: interaction of mutants with rhodopsin kinase and arrestin.

    abstract::Mutation of Gly90, Glu113, Ala292, and Lys296 in the visual pigment rhodopsin constitutively activates the protein for activation of the G protein transducin. Three of these mutations have been shown to cause two different human diseases. Mutation of Gly90 and Ala292 results in complete night blindness, and mutation o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00037a035

    authors: Rim J,Oprian DD

    更新日期:1995-09-19 00:00:00

  • Assignment of the natural abundance 13C spectrum of proteins using 13C 1H-detected heteronuclear multiple-bond correlation NMR spectroscopy: structural information and stereospecific assignments from two- and three-bond carbon-hydrogen coupling constants.

    abstract::Proton-detected heteronuclear multiple-bond 1H-13C correlations (HMBC) previously have been used for assignment purposes in a variety of isotopically enriched proteins. In the present study it is demonstrated that the technique yields an almost complete assignment of the natural abundance 13C spectrum of the protein b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00107a014

    authors: Hansen PE

    更新日期:1991-10-29 00:00:00

  • Mechanism of the conformational transition of melittin.

    abstract::It is known that, while melittin at micromolar concentrations is unfolded under conditions of low ionic strength at neutral pH, it adopts a tetrameric alpha-helical structure under conditions of high ionic strength, at alkaline pH, or at high peptide concentrations. To understand the mechanism of the conformational tr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00118a014

    authors: Goto Y,Hagihara Y

    更新日期:1992-01-28 00:00:00

  • The structural dynamics of actin during active interaction with myosin depends on the isoform of the essential light chain.

    abstract::We have used time-resolved phosphorescence anisotropy to investigate the effects of essential light chain (ELC) isoforms (A1 and A2) on the interaction of skeletal muscle myosin with actin, to relate structural dynamics to previously reported functional effects. Actin was labeled with a phosphorescent probe at C374, a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi3014467

    authors: Prochniewicz E,Guhathakurta P,Thomas DD

    更新日期:2013-03-05 00:00:00