Identification of ribosomal protein S1 as a poly(A) binding protein in Escherichia coli.

Abstract:

:To elucidate the metabolic function of mRNA polyadenylation in Escherichia coli. we searched for a polyadenylate-binding protein as a potential mediator of the function of the poly(A) moiety. Using a nitrocellulose filter-binding assay and a Northwestern blot technique, a protein in the ribosomal supernatant fraction of E coli was identified and purified to homogeneity. N-terminal sequence analysis yielded a 25-residue sequence which corresponded to the 25 N-terminal amino acids of protein S1, one of the proteins of the E coli 30S ribosomal subunit. Poly(A) binding to S1 protein was inhibited by Mg2+ and Mn2+ and by ATP and stimulated 8-fold by 100 mM KCl. The binding of S1 to poly(A) occurred with an association constant of 3 x 10(6) M-1 and seemed to be only mildly cooperative. Competition studies of the binding of poly(A) and poly(C) to purified S1 protein were consistent with the presence of two polynucleotide binding sites, of which one binds poly(A) five times more strongly than poly(C), whereas the other binds poly(C) 50 times more strongly than poly(A). Poly(A) bound to 30S ribosomal subunits but not to 50S ribosomes. To study possible association of S1 with the poly(A) tracts of E coli mRNA in the process of translation, poly(A) RNA was isolated from polysomes by oligo(dT) cellulose chromatography and the poly(A) RNA with bound protein was eluted either directly or after digestion with RNase T1 and A. When subjected to Western blot analysis with antibody to S1, both poly(A) RNA and isolated poly(A) tracts revealed bound S1 protein. The implications of these results for the possible interaction of poly(A) tracts of mRNA and the translational machinery of E coli are discussed.

journal_name

Biochimie

journal_title

Biochimie

authors

Kalapos MP,Paulus H,Sarkar N

doi

10.1016/s0300-9084(97)82741-1

subject

Has Abstract

pub_date

1997-09-01 00:00:00

pages

493-502

issue

8

eissn

0300-9084

issn

1638-6183

pii

S0300-9084(97)82741-1

journal_volume

79

pub_type

杂志文章
  • Diacylglycerol kinase δ controls down-regulation of cyclin D1 for C2C12 myogenic differentiation.

    abstract::Diacylglycerol kinase (DGK) is a lipid-metabolizing enzyme that phosphorylates diacylglycerol (DG) to produce phosphatidic acid (PA). DGKδ is highly expressed in the skeletal muscle, and a decrease in DGKδ expression increases the severity of type 2 diabetes. However, the role of DGKδ in myogenic differentiation is st...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2018.05.017

    authors: Sakai H,Murakami C,Matsumoto KI,Urano T,Sakane F

    更新日期:2018-08-01 00:00:00

  • One-step purification and properties of catalase from leaves of Zantedeschia aethiopica.

    abstract::Catalase (E.C 1.11.1.6) was purified from leaves of Zandedeschia aethiopica to apparent homogeneity by a one-step hydrophobic interaction chromatography on a phenyl Sepharose CL-4B column. The purified enzyme preparation was obtained with a final recovery of enzyme activity of about 61% and a specific activity of 146 ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(88)90035-1

    authors: Trindade H,Karmali A,Pais MS

    更新日期:1988-12-01 00:00:00

  • Inhibitory spectra of purified protease nexin-II and related proteins towards cellular proteinases.

    abstract::Amyloid beta protein (beta/A4) is deposited in senile plaques of patients with Alzheimer's disease. This protein is derived from a larger membrane-associated protein, termed amyloid precursor protein (APP). The constitutive processing of APP occurs at the central portion of beta/A4, resulting in the release of large N...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(93)90048-w

    authors: Shimokawa M,Nakamura K,Maruyama K,Tagawa K,Miyatake T,Sugita H,Ishiura S,Suzuki K

    更新日期:1993-01-01 00:00:00

  • Fate of the methyl group during the conversion of sterigmatocystin into O-methylsterigmatocystin and aflatoxin B1 by cell-free preparations of Aspergillus parasiticus.

    abstract::Cell-free extracts of fungal mycelia of two aflatoxin non-producing isolates of Aspergillus parasiticus (SRRC 163 and SRRC 2043) were utilized for the study of enzyme activities involved in the latter stages of aflatoxin biosynthesis. The post-microsomal fractions (105,000 x g supernatant) of both SRRC 163 and SRRC 20...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(88)90103-4

    authors: Bhatnagar D,Cleveland TE

    更新日期:1988-06-01 00:00:00

  • tRNAs as primer of reverse transcriptases.

    abstract::Genetic elements coding for proteins that present amino acid identity with the conserved motifs of retroviral reverse transcriptases constitute the retroid family. With the exception of reverse transcriptases encoded by mitochondrial plasmids of Neurospora, all reverse transcriptases have an absolute requirement for a...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/0300-9084(96)88114-4

    authors: Marquet R,Isel C,Ehresmann C,Ehresmann B

    更新日期:1995-01-01 00:00:00

  • Metabolic memory and diabetic nephropathy: Beneficial effects of natural epigenetic modifiers.

    abstract::Nephropathy is one of the most frequent complications of chronic diabetes. The main reason for nephropathy despite being hyperglycemia, but it progresses even after good glycemic control has been achieved in diabetic patients. The effects of prior exposure to high blood glucose conditions depend upon the severity and ...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2020.01.007

    authors: Kushwaha K,Sharma S,Gupta J

    更新日期:2020-03-01 00:00:00

  • Fatty acid metabolism, pharmacological nutrients and hypertension.

    abstract::The purpose of the present study was to investigate the effect of a concentrated preparation (EPA 30) containing eicosapentaenoic acid (EPA, 20:5 n-3) and docosahexaenoic acid (DHA, 22:6 n-3) on the limiting desaturation steps of the polyunsaturated fatty acid biosynthesis in spontaneously hypertensive rats (SHR). Adu...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(97)81505-2

    authors: Narce M,Frenoux JM,Dardel V,Foucher C,Germain S,Delachambre MC,Poisson JP

    更新日期:1997-02-01 00:00:00

  • Physico-chemical properties of R140G and K141Q mutants of human small heat shock protein HspB1 associated with hereditary peripheral neuropathies.

    abstract::Some physico-chemical properties of R140G and K141Q mutants of human small heat shock protein HspB1 associated with hereditary peripheral neuropathy were analyzed. Mutation K141Q did not affect intrinsic Trp fluorescence and interaction with hydrophobic probe bis-ANS, whereas mutation R140G decreased both intrinsic fl...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2013.04.014

    authors: Nefedova VV,Datskevich PN,Sudnitsyna MV,Strelkov SV,Gusev NB

    更新日期:2013-08-01 00:00:00

  • Kinetic and spectral properties of isovaleryl-CoA dehydrogenase and interaction with ligands.

    abstract::Isovaleryl-CoA dehydrogenase (IVD) catalyzes the conversion of isovaleryl-CoA to 3-methylcrotonyl-CoA and the transfer of electrons to the electron transfer flavoprotein (ETF). Recombinant human IVD purifies with bound CoA-persulfide. A modified purification protocol was developed to isolate IVD without bound CoA-pers...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2014.11.007

    authors: Mohsen AW,Vockley J

    更新日期:2015-01-01 00:00:00

  • Inhibition of potato spindle tuber viroid (PSTVd) infection with DNA oligonucleotides.

    abstract::The effects of DNA oligonucleotides complementary to potato spindle tuber viroid (PSTVd) on viroid infection were investigated. The oligonucleotides were used to form hybrids with PSTVd in the infection mixture. A 75% reduction of viroid infection was found when an oligonucleotide complementary to nucleotides 79-110 o...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(93)90026-o

    authors: Matousek J,Trnĕná L,Arnold L,Dĕdic P,Rakouský S,Steger G,Riesner D

    更新日期:1993-01-01 00:00:00

  • Calpain-1 resident in lipid raft/caveolin-1 membrane microdomains plays a protective role in endothelial cells.

    abstract::We are here reporting that calpain-1 is a constitutive component of a distinct lipid raft/caveolin-1 microdomain isolated from bEnd5 cells in association with endothelial nitric oxide synthase (eNOS) and heat shock protein 90 (HSP90). Perturbations in intracellular calcium concentration by Ca2+-ionophore A23187 or pro...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2016.12.002

    authors: Martines A,Stifanese R,Faelli EL,Perasso L,Melloni I,Ruggeri P,Averna M

    更新日期:2017-02-01 00:00:00

  • Hormonal regulation of liver phosphoenolpyruvate carboxykinase and glucokinase gene expression at weaning in the rat.

    abstract::During the suckling period, the rats are fed continuously with milk, which is a high-fat low-carbohydrate diet (HF). At weaning, milk is progressively replaced by the rat's laboratory chow which is a high-carbohydrate low-fat diet (HCHO), and this is accompanied by large hormonal modifications: an increase in plasma i...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/0300-9084(91)90077-e

    authors: Girard J,Perdereau D,Narkewicz M,Coupé C,Ferré P,Decaux JF,Bossard P

    更新日期:1991-01-01 00:00:00

  • The Staphylococcus aureus FASII bypass escape route from FASII inhibitors.

    abstract::Antimicrobials targeting the fatty acid synthesis (FASII) pathway are being developed as alternative treatments for bacterial infections. Emergence of resistance to FASII inhibitors was mainly considered as a consequence of mutations in the FASII target genes. However, an alternative and efficient anti-FASII resistanc...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2017.07.004

    authors: Morvan C,Halpern D,Kénanian G,Pathania A,Anba-Mondoloni J,Lamberet G,Gruss A,Gloux K

    更新日期:2017-10-01 00:00:00

  • Immunological demonstration of alpha-fetoprotein in uterine cytosol from immature rats.

    abstract::An immunological demonstration of alpha-fetoprotein (AFP) in uterine cytosol from immature rats is reported. The identity between serum AFP and the estrogen binding 4.5 S macromolecular complex of uterine cytosol was demonstrated by the use of a specific immunoadsorbent to AFP. Analysis of the sedimentation profile ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(74)80075-1

    authors: Aussel C,Uriel J,Michel G,Baulieu EE

    更新日期:1974-01-01 00:00:00

  • Exploiting the unique features of Zika and Dengue proteases for inhibitor design.

    abstract::Zika and Dengue viruses have attracted substantial attention from researchers in light of recent outbreaks of Dengue fever and increases in cases of congenital microcephaly in areas with Zika incidence. This review summarizes the current state of knowledge about Zika and Dengue proteases. These enzymes have several in...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2019.05.004

    authors: Majerová T,Novotný P,Krýsová E,Konvalinka J

    更新日期:2019-11-01 00:00:00

  • Evidence for a phosphoenolpyruvate dependent sugar-phosphotransferase system in the mollicute Acholeplasma florum.

    abstract::In order to confirm the presence of a phosphoenolpyruvate (PEP)-dependent sugar-phosphotransferase system (PTS) in the mollicute Acholeplasma florum we studied the ability of cell free extracts of this organism to phosphorylate glucose and/or fructose in the presence of PEP. We also cloned and sequenced a DNA fragment...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(93)90098-d

    authors: Navas-Castillo J,Laigret F,Hocquellet A,Chang CJ,Bove JM

    更新日期:1993-01-01 00:00:00

  • Thiolation of low-density lipoproteins and their interaction with L2C leukemic lymphocytes.

    abstract::We present here, a new method for coupling sulfhydryl groups (SH) to low-density lipoprotein (LDL) surface. This method uses homocysteine thiolactone (HCTL) which reacts with lysine residues in a very mild manner, and permits the selection of the number of SH bound per LDL. Under our experimental conditions (8 SH/LDL)...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(86)80166-3

    authors: Vidal M,Sainte-Marie J,Philippot J,Bienvenue A

    更新日期:1986-05-01 00:00:00

  • Interaction of wheat germ translation initiation factor 2 with GDP and GTP.

    abstract::The wheat germ translation initiation factor 2 (WGeIF-2) was isolated in a homogeneous state by an efficient procedure and characterized. Its molecular mass, as determined by a gel-filtration method is approximately 150,000 Da. According to SDS-PAGE WGeIF-2 consists of four subunits with M(r) 37,000 (alpha), 40,000 (b...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(92)90085-s

    authors: Shaikhin SM,Smailov SK,Lee AV,Kozhanov EV,Iskakov BK

    更新日期:1992-05-01 00:00:00

  • Medium throughput biochemical compound screening identifies novel agents for pharmacotherapy of neurofibromatosis type 1.

    abstract::The variable manifestation of phenotypes that occur in patients with neurofibromatosis type 1 (NF1) includes benign and malignant neurocutaneous tumors for which no adequate treatment exists. Cell-based screening of known bioactive compounds library identified the protein phosphatase 2A (PP2A) inhibitor Cantharidin an...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2017.01.001

    authors: Semenova G,Stepanova DS,Deyev SM,Chernoff J

    更新日期:2017-04-01 00:00:00

  • Degradation of oxidized proteins by the 20S proteasome.

    abstract::Oxidatively modified proteins are continuously produced in cells by reactive oxygen and nitrogen species generated as a consequence of aerobic metabolism. During periods of oxidative stress, protein oxidation is significantly increased and may become a threat to cell survival. In eucaryotic cells the proteasome has be...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(01)01250-0

    authors: Davies KJ

    更新日期:2001-03-01 00:00:00

  • Sphingosine's role in epithelial host defense: A natural antimicrobial and novel therapeutic.

    abstract::Sphingosine is a natural sphingolipid found in membranes of all eukaryotic cells. In addition to its functions in cell signaling, sphingosine has broad-spectrum antimicrobial properties. Sphingosine's role as an antimicrobial is important in tissues such as the skin and respiratory epithelium. Reduction in the normal ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2017.03.014

    authors: Martin GE,Boudreau RM,Couch C,Becker KA,Edwards MJ,Caldwell CC,Gulbins E,Seitz A

    更新日期:2017-10-01 00:00:00

  • Protein engineering of ribonucleases.

    abstract::Natural bovine seminal RNase possesses a potent antitumor action. We have mutagenized monomeric bovine pancreatic RNase A, devoid of any cytotoxic action, to insert residues present at corresponding positions in the subunit of dimeric, antitumor, seminal RNase. Like naturally dimeric seminal RNase, the mutant dimeric ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(00)88887-2

    authors: Cafaro V,Bracale A,Formiggini F,Notomista E,D'Alessio G,Di Donato A

    更新日期:1998-11-01 00:00:00

  • How to characterize meiotic functions in plants?

    abstract::Our understanding of plant meiosis is rapidly increasing thanks to the model Arabidopsis thaliana. Here we present the results of a screening for meiotic mutants carried out with a library containing 30,719 T-DNA insertion lines. An average of one mutant per 1000 lines was recovered. Several phenotypic classes could b...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(01)01348-7

    authors: Mercier R,Grelon M,Vezon D,Horlow C,Pelletier G

    更新日期:2001-11-01 00:00:00

  • Subcellular localization and self-interaction of plant-specific Nt-4/1 protein.

    abstract::The Nicotiana tabacum Nt-4/1 protein is a plant-specific protein of unknown function. Analysis of bacterially expressed Nt-4/1 protein in vitro revealed that the protein secondary structure is mostly alpha-helical and suggested that it could consist of three structural domains. Earlier studies of At-4/1, the Arabidops...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2013.02.015

    authors: Solovyev AG,Minina EA,Makarova SS,Erokhina TN,Makarov VV,Kaplan IB,Kopertekh L,Schiemann J,Richert-Pöggeler KR,Morozov SY

    更新日期:2013-07-01 00:00:00

  • Prostaglandin E synthases: Understanding their pathophysiological roles through mouse genetic models.

    abstract::Prostaglandin E synthase (PGES), which converts cyclooxygenase (COX)-derived prostaglandin H(2) (PGH(2)) to PGE(2), is known to comprise a group of at least three structurally and biologically distinct enzymes. Two of them are membrane-bound and have been designated as mPGES-1 and mPGES-2. mPGES-1 is a perinuclear pro...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2010.02.007

    authors: Hara S,Kamei D,Sasaki Y,Tanemoto A,Nakatani Y,Murakami M

    更新日期:2010-06-01 00:00:00

  • Analysis of the Saccharomyces cerevisiae exosome architecture and of the RNA binding activity of Rrp40p.

    abstract::The exosome is a complex of eleven subunits in yeast, involved in RNA processing and degradation. Despite the extensive in vivo functional studies of the exosome, little information is yet available on the structure of the complex and on the RNase and RNA binding activities of the individual subunits. The current mode...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2007.01.011

    authors: Luz JS,Tavares JR,Gonzales FA,Santos MC,Oliveira CC

    更新日期:2007-05-01 00:00:00

  • Glutathione modulation during sensitization as well as challenge phase regulates airway reactivity and inflammation in mouse model of allergic asthma.

    abstract::Glutathione, being a major intracellular redox regulator has been shown to be implicated in regulation of airway reactivity and inflammation. However, no study so far has investigated the effect of glutathione depletion/repletion during sensitization and challenge phases separately, which could provide an important in...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2014.04.001

    authors: Nadeem A,Siddiqui N,Alharbi NO,Alharbi MM,Imam F,Sayed-Ahmed MM

    更新日期:2014-08-01 00:00:00

  • The nicotinamide subsite of glyceraldehyde-3-phosphate dehydrogenase studied by site-directed mutagenesis.

    abstract::Directed mutagenesis has been used to study the nicotinamide subsite of the glycolytic NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Residue Asn313 is involved together with the carboxyamide moiety of the nicotinamide ring in a complex network of hydrogen bonding interactions which fix the position o...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(90)90119-2

    authors: Corbier C,Mougin A,Mely Y,Adolph HW,Zeppezauer M,Gerard D,Wonacott A,Branlant G

    更新日期:1990-08-01 00:00:00

  • Attenuated mitochondrial NADP+-dependent isocitrate dehydrogenase activity induces apoptosis and hypertrophy of H9c2 cardiomyocytes.

    abstract::Oxidative stress, characterized by the accumulation of reactive oxygen species (ROS), is known to have numerous detrimental effects on the myocardium such as the induction of apoptotic cell death, hypertrophy, fibrosis, dysfunction, and dilatation. Over the past several years, we have shown that mitochondrial NADP(+)-...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2013.11.016

    authors: Lee JH,Park JW

    更新日期:2014-04-01 00:00:00

  • Promotion of p53 expression and reactive oxidative stress production is involved in zerumbone-induced cisplatin sensitization of non-small cell lung cancer cells.

    abstract::p53 signaling plays an important role in cell death. Zerumbone, a natural cyclic sesquiterpene, has shown cytotoxic activity against many cancers. This study was done to investigate the anticancer effects of zerumbone on non-small cell lung cancer (NSCLC) cells and explored the involvement of p53 signaling. Cell viabi...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2014.09.001

    authors: Hu Z,Zeng Q,Zhang B,Liu H,Wang W

    更新日期:2014-12-01 00:00:00