The nucleotide sequence, structure, and preliminary studies on the transcriptional regulation of the bovine alpha skeletal actin gene.

Abstract:

:The promoters of mammalian striated muscle actin gene contain binding sites for a number of transcription factors. Examples are the CArG boxes, which bind a protein identical to or related to serum response factor (SRF), E boxes, which bind myogenic determination factors such as MyoD and myogenin, and -CCGCCC- motifs, which bind the transcription factor Sp1. To date, the only mammalian sequences isolated and analyzed are from rodent and human. We have now isolated and sequenced the bovine gene encoding alpha skeletal actin, including almost 3 kb of 5'-flanking region. When compared to the human and rodent genes (the only ones previously cloned and for which 5'-flanking sequences to only approximately -750 are known), there was the expected conservation in the coding region. A comparison of the promoter regions indicated that the bovine gene has three CArG boxes in the 5'-flanking region in positions identical to those in other species. The bovine proximal promoter is unique from those of human and rodent in that it has only one E box in the vicinity of the TATA box, near -350, whereas the other mammals have three. Far upstream sequences reveal clusters of E boxes near -2,500 and -1,500. A minimal promoter element, to -297, which has no E boxes, is sufficient to activate transcription in myotubes derived from rat L6 and mouse C2C12 myoblasts.

journal_name

DNA Cell Biol

journal_title

DNA and cell biology

authors

Davey HW,Kelly JK,Wildeman AG

doi

10.1089/dna.1995.14.609

subject

Has Abstract

pub_date

1995-07-01 00:00:00

pages

609-18

issue

7

eissn

1044-5498

issn

1557-7430

journal_volume

14

pub_type

杂志文章
  • Three human homologs of a murine gene encoding an inhibitor of stem cell proliferation.

    abstract::The G0S19 genes are members of the "small inducible" family of genes, which have similar exon-intron organizations and encode secreted proteins with similar dispositions of cysteine and proline residues. G0S19-1 mRNA is increased shortly after the addition of lectin or cycloheximide to cultured human blood mononuclear...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1990.9.589

    authors: Blum S,Forsdyke RE,Forsdyke DR

    更新日期:1990-10-01 00:00:00

  • Downstream sequence adjacent to AUG affects translation of chloramphenicol acetyl transferase in eukaryotic cells.

    abstract::The CAT gene is widely used as a reporter in eukaryotic systems because of the efficient translation of its mRNA. We report here that a sequence occurring in the CAT mRNA at +15 nucleotides from CAT AUG is essential for translation. This sequence includes a stem-loop structure, which, however, exhibits a calculated st...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454900314690

    authors: Ciullo M,Del Pozzo G,Autiero M,Guardiola J

    更新日期:2000-01-01 00:00:00

  • Unforeseen consequences of IL-12 expression in the eye of GFAP-IL12 transgenic mice following herpes simplex virus type 1 infection.

    abstract::Transgenic mice expressing interleukin-12 (IL-12) under the glial fibrillary acidic protein (GFAP) promoter were evaluated for their sensitivity to herpes simplex virus type 1 (HSV-1) infection of the cornea. There was a modest but significant decrease in the infiltration of mononuclear cells in the cornea of the GFAP...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/10445490260099764

    authors: Carr DJ,Ash J,Al-Khatib K,Campbell IL

    更新日期:2002-05-01 00:00:00

  • Lack of an association between interleukin-6 -174G/C polymorphism and circulating interleukin-6 levels in normal population: a meta-analysis.

    abstract::Interleukin-6 (IL-6) signaling may play a causal role in the development of coronary heart disease. However, the relationship between IL-6 genotypes and plasma levels of IL-6 appears to be complex. To help clarify the inconsistent findings, we conducted a meta-analysis of the published genetic association studies of t...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,meta分析

    doi:10.1089/dna.2013.2148

    authors: Huang M,Wang L,Ma H,Wang J,Xiang M

    更新日期:2013-11-01 00:00:00

  • Gene set enrichment analysis reveals several globally affected pathways due to SKI-1/S1P inhibition in HepG2 cells.

    abstract::Sterol regulatory element-binding proteins (SREBPs) are transcription factors governing transcription of genes related to cholesterol and fatty acid metabolism. To become active, SREBPs must undergo a proteolytic cleavage to allow an active NH(2)-terminal segment to translocate into the nucleus. SKI-1/S1P is the first...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2007.0624

    authors: De Windt A,Rai M,Bernier L,Thelen K,Soini J,Lefebvre C,Chintawar S,Lavigne J,Saarinen L,Kytömäki L,Munzer JS,Lütjohann D,Pandolfo M,Davignon J,Seidah NG,Laaksonen R

    更新日期:2007-11-01 00:00:00

  • miR-21-5p Suppressed the Sensitivity of Hepatocellular Carcinoma Cells to Cisplatin by Targeting FASLG.

    abstract::Accumulating evidence has suggested that microRNAs play important roles in the development of hepatocellular carcinoma (HCC) and are involved in drug resistance. miR-21-5p was overexpressed in a variety of cancers and promoted the tumorigenesis; however, the function of miR-21-5p in HCC still remains unknown. In this ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2018.4529

    authors: Chen S,Yang C,Sun C,Sun Y,Yang Z,Cheng S,Zhuge B

    更新日期:2019-08-01 00:00:00

  • Genome-Wide Identification of Key Candidate microRNAs and Target Genes Associated with Peanut Drought Tolerance.

    abstract::Peanut is an important crash crop worldwide, and it is often threatened by drought stress due to unexpected extreme weather events. In this work, NH5 and FH18 were selected as drought-tolerant and drought-sensitive varieties, respectively. Comparison of their physiological responses revealed that NH5 showed less wilti...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2020.6245

    authors: Ren J,Zhang H,Shi X,Ai X,Dong J,Zhao X,Zhong C,Jiang C,Wang J,Yu H

    更新日期:2020-12-29 00:00:00

  • Constitutive mdmx expression during cell growth, differentiation, and DNA damage.

    abstract::The mdmx gene was shown to possess high homology to the mdm-2 gene and to encode a protein that can bind p53 and block p53 transactivation. Because Mdm-2 protein blocks the growth-suppressive activity of the p53 tumor-suppressor protein through similar activities, we examined the expression patterns of mdmx to determi...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454999314971

    authors: Jackson MW,Berberich SJ

    更新日期:1999-09-01 00:00:00

  • Developmental gonadal expression of the transcription factor SET and its target gene, P450c17 (17alpha-hydroxylase/c17,20 lyase).

    abstract::Cytochrome P450c17 catalyzes the 17alpha-hydroxylase/17,20 lyase activity needed for sex steroid synthesis. We recently characterized the nuclear phosphoprotein SET as a novel transcriptional regulator that binds to the -447/-399 region of the rat P450c17 gene, along with the transcription factors COUP-TF II, NGF-IB, ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454901753340604

    authors: Zhang P,Compagnone NA,Fiore C,Vigne JL,Culp P,Musci TJ,Mellon SH

    更新日期:2001-10-01 00:00:00

  • Isolation of a yeast gene encoding a protein homologous to the human Tat-binding protein TBP-1.

    abstract::We have cloned a putative yeast homolog of the gene encoding the human Tat-binding protein, TBP-1. The gene termed TBPY encodes a 45,243-dalton protein displaying a heptad repeat of hydrophobic amino acids reminiscent of a leucine zipper. Secondary structure predictions suggest the possibility of formation of an amphi...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1992.11.579

    authors: Goyer C,Lee HS,Malo D,Sonenberg N

    更新日期:1992-10-01 00:00:00

  • An NFIL-6 sequence near the transcriptional initiation site is necessary for the lipopolysaccharide induction of murine interleukin-1 beta.

    abstract::We have analyzed the interleukin-1 beta (IL-1 beta) promoter region near the cap site. Specific DNA sequences required for lipopolysaccharide (LPS) induction within this region were identified using transfection of reporter plasmids that contained portions of the proximal IL-1 beta 5'-flanking sequence. An LPS-respons...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1994.13.561

    authors: Godambe SA,Chaplin DD,Takova T,Bellone CJ

    更新日期:1994-06-01 00:00:00

  • miRNA-106a Promotes Breast Cancer Cell Proliferation, Clonogenicity, Migration, and Invasion Through Inhibiting Apoptosis and Chemosensitivity.

    abstract::To explore the effect of miR-106a in breast cancer cell behavior and sensitivity to chemotherapeutic agents. Tumor tissue and adjacent normal tissue were derived from 40 breast cancer patients, and miR-106a expression was measured by reverse transcription-qPCR. Breast cancer cells, MDA-MB-231 and MCF-7, were treated w...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2018.4282

    authors: You F,Luan H,Sun D,Cui T,Ding P,Tang H,Sun D

    更新日期:2019-02-01 00:00:00

  • Comparison of intestinal phospholipase A/lysophospholipase and sucrase-isomaltase genes suggest a common structure for enterocyte-specific promoters.

    abstract::Intestinal phospholipase A/lysophospholipase (IPAL) is an intestine-specific brush-border enzyme expressed during development and along the intestinal crypt-villus axis in a pattern similar to another well characterized brush-border enzyme, sucrase-isomaltase (SI). A tissue-specific DNase I hypersensitive site was ide...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1997.16.1419

    authors: Taylor JK,Boll W,Levy T,Suh E,Siang S,Mantei N,Traber PG

    更新日期:1997-12-01 00:00:00

  • Transfection Efficiency Evaluation and Endocytosis Exploration of Different Polymer Condensed Agents.

    abstract::DNA condensed agents can improve the transfection efficiency of the cationic liposome delivery system. However, various condensed agents have distinct transfection efficiency and cellular cytotoxicity. The object of this study was to screen the optimal agents with the high transfection efficiency and low cytotoxicity ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2018.4464

    authors: Wang J,Ye X,Ni H,Zhang J,Ju S,Ding W

    更新日期:2019-10-01 00:00:00

  • CFP1 interacts with DNMT1 independently of association with the Setd1 Histone H3K4 methyltransferase complexes.

    abstract::CXXC finger protein 1 (CFP1) is a component of the Setd1A and Setd1B methyltransferase complexes, localizes to euchromatic regions of the genome, and specifically binds unmethylated CpG dinucleotides in DNA. Murine embryos lacking CFP1 exhibit peri-implantation lethality, a developmental time that correlates with glob...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2007.0714

    authors: Butler JS,Lee JH,Skalnik DG

    更新日期:2008-10-01 00:00:00

  • Regulatory elements of the human proopiomelanocortin gene promoter.

    abstract::Proopiomelanocortin (POMC) is expressed predominantly in the corticotrophic cells of the pituitary. Regulatory sequences required for the expression of the human (h) POMC gene were investigated using transient expression of hPOMC-CAT fusion genes in pituitary and nonpituitary cells in combination with DNase I footprin...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1993.12.527

    authors: Kraus J,Buchfelder M,Höllt V

    更新日期:1993-07-01 00:00:00

  • Escaping the cut by restriction enzymes through single-strand self-annealing of host-edited 12-bp and longer synthetic palindromes.

    abstract::Palindromati, the massive host-edited synthetic palindromic contamination found in GenBank, is illustrated and exemplified. Millions of contaminated sequences with portions or tandems of such portions derived from the ZAP adaptor or related linkers are shown (1) by the 12-bp sequence reported elsewhere, exon Xb, 5' CC...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2011.1339

    authors: Castro-Chavez F

    更新日期:2012-02-01 00:00:00

  • Sp family transcription factors regulate expression of rat D2 dopamine receptor gene.

    abstract::The rat D2 dopamine receptor gene is transcribed from a TATA-less promoter that has an initiator-like sequence and several putative Sp1 binding sites. We previously reported that a negative modulator is located between nucleotides -116 and -76 (D2Neg-B) in this gene and that Sp1 as well as another unknown factor bind ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1998.17.471

    authors: Yajima S,Lee SH,Minowa T,Mouradian MM

    更新日期:1998-05-01 00:00:00

  • Biological and Clinical Relevance of microRNAs in Mitochondrial Diseases/Dysfunctions.

    abstract::Mitochondrial dysfunction arises from an inadequate number of mitochondria, an inability to provide necessary substrates to mitochondria, or a dysfunction in their electron transport and a denosine triphosphate synthesis machinery. Occurrences of mitochondrial dysfunction are due to genetic or environmental changes in...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,评审

    doi:10.1089/dna.2019.5013

    authors: Sekar D,Johnson J,Biruntha M,Lakhmanan G,Gurunathan D,Ross K

    更新日期:2020-08-01 00:00:00

  • The UDP glucuronosyltransferase gene superfamily: suggested nomenclature based on evolutionary divergence.

    abstract::A nomenclature system for the UDP glucuronosyltransferase superfamily is proposed, based on divergent evolution of the genes. A total of 26 distinct cDNAs in five mammalian species have been sequenced to date. Comparison of the deduced amino acid sequences leads to the definition of two families and a total of three s...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,评审

    doi:10.1089/dna.1991.10.487

    authors: Burchell B,Nebert DW,Nelson DR,Bock KW,Iyanagi T,Jansen PL,Lancet D,Mulder GJ,Chowdhury JR,Siest G

    更新日期:1991-09-01 00:00:00

  • Functional dissection of the HNF-1alpha transcription factor: a study on nuclear localization and transcriptional activation.

    abstract::Hepatocyte nuclear factor-1alpha (HNF-1alpha) is a homeodomain-containing transcription factor regulating the expression of liver and pancreas-specific genes. Mutations in the HNF-1alpha-encoding gene TCF1 cause maturity-onset diabetes of the young, type 3 (MODY3). These mutations may affect nuclear import or reduce t...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2005.24.661

    authors: Bjørkhaug L,Bratland A,Njølstad PR,Molven A

    更新日期:2005-11-01 00:00:00

  • Transfection of keratinocytes abrogates detectable DNA-binding activity of CCAAT displacement protein.

    abstract::Transfection of keratinocytes with plasmid DNA leads to the loss of detectable DNA-binding activity of CCAAT displacement protein but not of Yin Yang 1, as monitored by electrophoretic mobility shift assay. This phenomenon was found to be attributable to the presence of plasmid DNA in the nuclear extracts prepared fro...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454902753604989

    authors: Narahari J,Roman A

    更新日期:2002-02-01 00:00:00

  • Pathogenic mechanisms of P. aeruginosa keratitis: a review of the role of T cells, Langerhans cells, PMN, and cytokines.

    abstract::The aim of this article is to review our current understanding of the role of cytokines, chemokines, T cells, Langerhans cells, and neutrophils (PMN) and their interactions in vivo in the host response to Pseudomonas aeruginosa ocular challenge. The cellular/cytokine network in vivo has begun to be unraveled, and the ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,评审

    doi:10.1089/10445490260099665

    authors: Hazlett LD

    更新日期:2002-05-01 00:00:00

  • Identification of a Multi-RNA-Type-Based Signature for Recurrence-Free Survival Prediction in Patients with Uterine Corpus Endometrial Carcinoma.

    abstract::Uterine corpus endometrial carcinoma (UCEC) is one of the leading causes of death from gynecological cancer due to the high recurrence rate. A recent study indicated that molecular biomarkers can enhance the recurrence prediction power if they were integrated with clinical information. In this study, we attempted to i...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2019.5148

    authors: Wang P,Zeng Z,Shen X,Tian X,Ye Q

    更新日期:2020-04-01 00:00:00

  • The role of p73 G4C14-to-A4T14 polymorphism in the susceptibility to cervical cancer.

    abstract::Several reports have suggested the importance of p73 polymorphisms in tumor behavior. We investigated the role of a p73 gene polymorphism in the susceptibility to cervical lesions in a southwestern European population. Peripheral blood samples were obtained from Radiotherapy and Gynaecology Departments of Portuguese I...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2011.1294

    authors: Craveiro R,Bravo I,Catarino R,Teixeira AL,Sousa H,Pereira D,Pereira H,Medeiros R

    更新日期:2012-02-01 00:00:00

  • A Whole-Exome Sequencing Study of Tourette Disorder in a Chinese Population.

    abstract::To investigate the contribution of de novo variants to Tourette disorder (TD) probands in China. Whole-exome sequencing (WES) conducted on 15 child-parent trios (45 samples) detected 25 coding de novo variants, including 2 de novo Likely Gene Disrupting (LGD) variants and 6 Missense3 variants. The de novo LGD variants...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2019.4746

    authors: Zhao X,Wang S,Hao J,Zhu P,Zhang X,Wu M

    更新日期:2020-01-01 00:00:00

  • RNA-seq Used to Explore circRNA Expression and Identify Key circRNAs During the DNA Synthesis Phase of Mice Liver Regeneration.

    abstract::The liver has an excellent capacity for regeneration when faced with external injury and the damage differs from that of other organs in the body. Our aim was to identify the role of circular RNA (circRNA) during the DNA synthesis phase (36 h) of mice liver regeneration. High-throughput RNA sequencing was conducted to...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2020.5750

    authors: Zhang J,Xu L,Wang P,Zheng X,Hu Y,Luo J,Zhang M,Xu M

    更新日期:2020-11-01 00:00:00

  • Quantitative measurement of human T-cell receptor V beta subfamilies by reverse transcription-polymerase chain reaction using synthetic internal mRNA standards.

    abstract::Quantitative determination of T-cell receptor (TCR) V beta expression is necessary to define the changes in TCR-V beta subfamily expression that occur during T-cell maturation and selection and to detect alterations of the TCR-V beta repertoire that may be associated with human diseases. Here we describe and validate ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1993.12.217

    authors: Duchmann R,Strober W,James SP

    更新日期:1993-04-01 00:00:00

  • Isolation of cDNA clones for 42 different Krüppel-related zinc finger proteins expressed in the human monoblast cell line U-937.

    abstract::To study the complexity and structural characteristics of zinc finger proteins expressed during human hematopoiesis and to isolate novel regulators of blood cell development, a degenerate oligonucleotide probe specific for a consensus zinc finger peptide domain was used to isolate 63 cDNA clones for Krüppel-related zi...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1995.14.125

    authors: Abrink M,Aveskogh M,Hellman L

    更新日期:1995-02-01 00:00:00

  • Bacterial expression and characterization of recombinant biologically active anti-tyrosine kinase receptor antibody forms.

    abstract::Homomeric and heteromeric interactions among cell-surface tyrosine kinase receptors belonging to the ErbB family lead to intracellular signaling cascades which are involved in cell activation, cytoskeletal interactions, and cellular transformation leading to neoplasia. Monoclonal antibodies which specifically bind to ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1998.17.1031

    authors: Peterson NC,Greene MI

    更新日期:1998-12-01 00:00:00