当前位置： SCI文献检索 > NUCLEIC ACIDS RESEARCH期刊下所有文献 > A comparative study of G+C-rich satellite components of sheep and goat DNA.

A comparative study of G+C-rich satellite components of sheep and goat DNA.

Abstract：

:Restriction fragment patterns of G+C-rich satellites of sheep and goat DNA were compared. The 1,712 g/cm3 satellites of both species appear homologous, consisting of repeats 760 base pairs long and showing coincidence of position of primary+ EcoRI, BamHI and most BspRI restriction target sites. The EcoRI and BamHI endonucleases produce mostly monomers of the repeating unit, while oligomers prevail in the A1uI and Bg1II digests. Species-specific differences in the frequency, position and mode of distribution of secondary+ restriction target sites for EcoRI, Bg1II and A1uI were observed. Unlike the 1,712 g/cm3 satellites, the 1,723 g/cm3 component of sheep DNA and the 1,719 g/cm3 material from goat DNA appear species--specific, since no homologous material could ever be detected in the DNA of the other species.

journal_name

Nucleic Acids Res

journal_title

Nucleic acids research

authors

Forstová J,Votavová H,Guttmann T,Pivec L,Doskocil J

doi

10.1093/nar/6.1.57

subject

Has Abstract

pub_date

1979-01-01 00:00:00

pages

57-70

issue

1

eissn

0305-1048

issn

1362-4962

journal_volume

6

pub_type

杂志文章

相关文献

NUCLEIC ACIDS RESEARCH文献大全
  • Intramolecular DNA melting between stable helical segments: melting theory and metastable states.

    abstract：:Melting of DNA in a segment bounded at both ends by regions of greater stability during electrophoresis in denaturing gradient gels show complex properties, not accommodated with standard melting theory. Compact bands of some DNA molecules become anomalously broadened at the retardation level in a denaturing gradient,...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/23.14.2775

    authors： Abrams ES,Murdaugh SE,Lerman LS

    更新日期：1995-07-25 00:00:00

  • Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes.

    abstract：:Large differences in plant genome sizes are mainly due to numerous events of insertions or deletions (indels). The balance between these events determines the evolutionary direction of genome changes. To address the question of what phenomena trigger these alterations, we compared the genomic sequences of two Arabidop...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gkp183

    authors： Ziolkowski PA,Koczyk G,Galganski L,Sadowski J

    更新日期：2009-06-01 00:00:00

  • DmTTF, a novel mitochondrial transcription termination factor that recognises two sequences of Drosophila melanogaster mitochondrial DNA.

    abstract：:Using a combination of bioinformatic and molecular biology approaches a Drosophila melanogaster protein, DmTTF, has been identified, which exhibits sequence and structural similarity with two mitochondrial transcription termination factors, mTERF (human) and mtDBP (sea urchin). Import/processing assays indicate that D...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gkg272

    authors： Roberti M,Polosa PL,Bruni F,Musicco C,Gadaleta MN,Cantatore P

    更新日期：2003-03-15 00:00:00

  • Solid-phase synthesis of polynucleotides. IV. Usage of polystyrene resins for the synthesis of polydeoxyribonucleotides by the phosphostriester method.

    abstract：:Contrary to the expectation, the Merrifield polystyrene resin, 2% cross-linked by divinylbenzene, is as efficient as the polyacrylmorpholide resin for the synthesis of polydeoxyribonucleotides using a phosphotriester method. On the Merrifield resin, the tetradecamer, dTpCpGpTpCpApApCpTpGpGpCpTpT, and the hexadecamer, ...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/8.22.5507

    authors： Miyoshi K,Arentzen R,Huang T,Itakura K

    更新日期：1980-11-25 00:00:00

  • A deep learning framework for modeling structural features of RNA-binding protein targets.

    abstract：:RNA-binding proteins (RBPs) play important roles in the post-transcriptional control of RNAs. Identifying RBP binding sites and characterizing RBP binding preferences are key steps toward understanding the basic mechanisms of the post-transcriptional gene regulation. Though numerous computational methods have been dev...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gkv1025

    authors： Zhang S,Zhou J,Hu H,Gong H,Chen L,Cheng C,Zeng J

    更新日期：2016-02-29 00:00:00

  • Circular chromosomal DNA in the sulfur-dependent archaebacterium Sulfolobus acidocaldarius.

    abstract：:The shape of the chromosomal DNA of the sulfur-dependent archaebacterium Sulfolobus acidocaldarius was analyzed by the pulsed-field gel electrophoresis(PFGE). S.acidocaldarius DNA digested with Notl showed two DNA bands at around 1.0 Mbp and 2.1 Mbp. Notl-linking clones were isolated from the library of S.acidocaldari...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/18.5.1133

    authors： Yamagishi A,Oshima T

    更新日期：1990-03-11 00:00:00

  • Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control.

    abstract：:SLM2 and Sam68 are splicing regulator paralogs that usually overlap in function, yet only SLM2 and not Sam68 controls the Neurexin2 AS4 exon important for brain function. Herein we find that SLM2 and Sam68 similarly bind to Neurexin2 pre-mRNA, both within the mouse cortex and in vitro. Protein domain-swap experiments ...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gkw1277

    authors： Danilenko M,Dalgliesh C,Pagliarini V,Naro C,Ehrmann I,Feracci M,Kheirollahi-Chadegani M,Tyson-Capper A,Clowry GJ,Fort P,Dominguez C,Sette C,Elliott DJ

    更新日期：2017-04-20 00:00:00

  • Transcription factor decoy oligonucleotides modified with locked nucleic acids: an in vitro study to reconcile biostability with binding affinity.

    abstract：:Double-stranded oligonucleotides (ODNs) containing the consensus binding sequence of a transcription factor provide a rationally designed tool to manipulate gene expression at the transcriptional level by the decoy approach. However, modifications introduced into oligonucleotides to increase stability quite often do n...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gkh503

    authors： Crinelli R,Bianchi M,Gentilini L,Palma L,Sørensen MD,Bryld T,Babu RB,Arar K,Wengel J,Magnani M

    更新日期：2004-03-29 00:00:00

  • The SALAMI protein structure search server.

    abstract：:Protein structures often show similarities to another which would not be seen at the sequence level. Given the coordinates of a protein chain, the SALAMI server at www.zbh.uni-hamburg.de/salami will search the protein data bank and return a set of similar structures without using sequence information. The results page...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gkp431

    authors： Margraf T,Schenk G,Torda AE

    更新日期：2009-07-01 00:00:00

  • Identifying DNA-binding proteins using structural motifs and the electrostatic potential.

    abstract：:Robust methods to detect DNA-binding proteins from structures of unknown function are important for structural biology. This paper describes a method for identifying such proteins that (i) have a solvent accessible structural motif necessary for DNA-binding and (ii) a positive electrostatic potential in the region of ...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gkh803

    authors： Shanahan HP,Garcia MA,Jones S,Thornton JM

    更新日期：2004-09-08 00:00:00

  • APC gene: database of germline and somatic mutations in human tumors and cell lines.

    abstract：:A database (http://perso.curie.fr/tsoussi ) is described, in which over 1000 mutations in the human APC gene of tumors (colon cancer predominantly) are compiled from the literature. It includes both molecular information about the mutations and clinical data about the patients. Software has been designed to analyse al...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/26.1.269

    authors： Laurent-Puig P,Béroud C,Soussi T

    更新日期：1998-01-01 00:00:00

  • DNA methylase from HeLa cell nuclei.

    abstract：:A DNA methylase has been purified 270-fold from HeLa cell nuclei by chromatography on DEAE-cellulose, phosphocellulose, and hydroxyapatite. The enzyme transfers methyl groups from S-adenosyl-L-methionine to cytosine residues in DNA. The sole product of the reaction has been identified as 5-methylcytosine. The enzyme i...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/2.10.1669

    authors： Roy PH,Weissbach A

    更新日期：1975-10-01 00:00:00

  • NMR solution structure of an asymmetric intermolecular leaped V-shape G-quadruplex: selective recognition of the d(G2NG3NG4) sequence motif by a short linear G-rich DNA probe.

    abstract：:Aside from classical loops among G-quadruplexes, the unique leaped V-shape scaffold spans over three G-tetrads, without any intervening residues. This scaffold enables a sharp reversal of two adjacent strand directions and simultaneously participates in forming the G-tetrad core. These features make this scaffold itse...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gky1167

    authors： Wan C,Fu W,Jing H,Zhang N

    更新日期：2019-02-20 00:00:00

  • Identification and classification of bacterial Type III toxin-antitoxin systems encoded in chromosomal and plasmid genomes.

    abstract：:Toxin-antitoxin systems are widespread in bacteria and archaea. They perform diverse functional roles, including the generation of persistence, maintenance of genetic loci and resistance to bacteriophages through abortive infection. Toxin-antitoxin systems have been divided into three types, depending on the nature of...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gks231

    authors： Blower TR,Short FL,Rao F,Mizuguchi K,Pei XY,Fineran PC,Luisi BF,Salmond GP

    更新日期：2012-07-01 00:00:00

  • 2-Thiouracil deprived of thiocarbonyl function preferentially base pairs with guanine rather than adenine in RNA and DNA duplexes.

    abstract：:2-Thiouracil-containing nucleosides are essential modified units of natural and synthetic nucleic acids. In particular, the 5-substituted-2-thiouridines (S2Us) present in tRNA play an important role in tuning the translation process through codon-anticodon interactions. The enhanced thermodynamic stability of S2U-cont...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gkv109

    authors： Sochacka E,Szczepanowski RH,Cypryk M,Sobczak M,Janicka M,Kraszewska K,Bartos P,Chwialkowska A,Nawrot B

    更新日期：2015-03-11 00:00:00

  • Structure of a Bacillus subtilis endo-beta-1,4-glucanase gene.

    abstract：:The nucleotide sequence of the portion of a Bacillus subtilis (strain PAP115) 3 kb Pst I fragment which contains an endo-beta-1, 4-glucanase gene has been determined. This gene encodes a protein of 499 amino acid residues (Mr = 55,234) with a typical B. subtilis signal peptide. Escherichia coli which has been transfor...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/14.22.9159

    authors： MacKay RM,Lo A,Willick G,Zuker M,Baird S,Dove M,Moranelli F,Seligy V

    更新日期：1986-11-25 00:00:00

  • The intronerator: exploring introns and alternative splicing in Caenorhabditis elegans.

    abstract：:The Intronerator (http://www.cse.ucsc.edu/ approximately kent/intronerator/ ) is a set of web-based tools for exploring RNA splicing and gene structure in Caenorhabditis elegans. It includes a display of cDNA alignments with the genomic sequence, a catalog of alternatively spliced genes and a database of introns. The ...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/28.1.91

    authors： Kent WJ,Zahler AM

    更新日期：2000-01-01 00:00:00

  • Misincorporation of dAMP opposite 2-hydroxyadenine, an oxidative form of adenine.

    abstract：:Nucleotide incorporation opposite an oxidative form of adenine, 2-hydroxyadenine (2-OH-Ade) was investigated. When a primed template with 2-OH-Ade was treated with an exonuclease-deficient Klenow fragment of Escherichia coli DNA polymerase I (KFexo-), recombinant rat DNA polymerase beta (pol beta) or calf thymus DNA p...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/23.5.761

    authors： Kamiya H,Ueda T,Ohgi T,Matsukage A,Kasai H

    更新日期：1995-03-11 00:00:00

  • Embryonic erythropoiesis and hemoglobin switching require transcriptional repressor ETO2 to modulate chromatin organization.

    abstract：:The underlying mechanism of transcriptional co-repressor ETO2 during early erythropoiesis and hemoglobin switching is unclear. We find that absence of ETO2 in mice interferes with down-regulation of PU.1 and GATA2 in the fetal liver, impeding a key step required for commitment to erythroid maturation. In human β-globi...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gkaa736

    authors： Guo X,Plank-Bazinet J,Krivega I,Dale RK,Dean A

    更新日期：2020-10-09 00:00:00

  • Ultraviolet light irradiation of PM2 superhelical DNA.

    abstract：:Superhelical PM2 DNA can be photochemically modified by u.v. irradiation. The variation of S20,w with dose shows the following characteristics. There is a linear increase from 28 to 31s produced by a low dose of u.v. irradiation (4,000 ergs/mm2). A plateau in S20,w occurs between 4,000 and 10,000 ergs/mm2. The S20,w t...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/4.5.1243

    authors： Woodworth-Gutai M,Lebowitz J,Kato AC,Denhardt DT

    更新日期：1977-01-01 00:00:00

  • Rapid and efficient hybridization-triggered crosslinking within a DNA duplex by an oligodeoxyribonucleotide bearing a conjugated cyclopropapyrroloindole.

    abstract：:The antitumor antibiotic CC-1065 binds in the minor groove of double-stranded DNA, and the cyclopropapyrroloindole (CPI) subunit of the drug alkylates adjacent adenines at their N-3 position. We have attached racemic CPI to oligodeoxyribonucleotides (ODNs) via a terminal phosphorothioate at either the 3'- or 5'-end of...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/24.4.683

    authors： Lukhtanov EA,Podyminogin MA,Kutyavin IV,Meyer RB,Gamper HB

    更新日期：1996-02-15 00:00:00

  • Complete nucleotide sequence of alfalfa mosaic virus RNA 4.

    abstract：:Alfalfa mosaic virus RNA 4, the subgenomic messenger for viral coat protein, was partially digested with RNase T1 or RNase A and the sequence of a number of fragments was deduced by in vitro labeling with polynucleotide kinase and application of RNA sequencing techniques. From overlapping fragments, the complete prima...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/8.10.2213

    authors： Brederode FT,Koper-Zwarthoff EC,Bol JF

    更新日期：1980-05-24 00:00:00

  • Transcriptionally competent chromatin assembled with exogenous histones in a yeast whole cell extract.

    abstract：:We describe a cell-free chromatin assembly system derived from the yeast Saccharomyces cerevisiae, which efficiently packages DNA into minichromosomes in a reaction dependent on exogenous core histones and an ATP-regenerating system. Both supercoiled and relaxed plasmid DNA serve as templates for nucleosomal loading i...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gnh107

    authors： Rodríguez-Campos A,Koop R,Faraudo S,Beato M

    更新日期：2004-07-28 00:00:00

  • 3D-Image analysis platform monitoring relocation of pluripotency genes during reprogramming.

    abstract：:Nuclear organization of chromatin is an important level of genome regulation with positional changes of genes occurring during reprogramming. Inherent variability of biological specimens, wide variety of sample preparation and imaging conditions, though pose significant challenges to data analysis and comparison. Here...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gkr486

    authors： Jost KL,Haase S,Smeets D,Schrode N,Schmiedel JM,Bertulat B,Herzel H,Cremer M,Cardoso MC

    更新日期：2011-09-01 00:00:00

  • Structural determinants of an internal ribosome entry site that direct translational reading frame selection.

    abstract：:The dicistrovirus intergenic internal ribosome entry site (IGR IRES) directly recruits the ribosome and initiates translation using a non-AUG codon. A subset of IGR IRESs initiates translation in either of two overlapping open reading frames (ORFs), resulting in expression of the 0 frame viral structural polyprotein a...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gku622

    authors： Ren Q,Au HH,Wang QS,Lee S,Jan E

    更新日期：2014-08-01 00:00:00

  • Alterations in lysine transfer RNA during erythroid differentiation of the Friend cell.

    abstract：:The proportion of lysine tRNA represented by the isoacceptor species lysine tRNA4 has previously been shown to be largest in cells with the greatest ability to proliferate. Using reverse phase chromatography (RPC-5), we have analyzed the changes in the relative quantities of lysine tRNA species which occur in differen...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/5.3.851

    authors： Kleiman L,Woodward-Jack J,Cedergren RJ,Dion R

    更新日期：1978-03-01 00:00:00

  • HIV-1 Vif binds to APOBEC3G mRNA and inhibits its translation.

    abstract：:The HIV-1 viral infectivity factor (Vif) allows productive infection of non-permissive cells (including most natural HIV-1 targets) by counteracting the cellular cytosine deaminases APOBEC-3G (hA3G) and hA3F. The Vif-induced degradation of these restriction factors by the proteasome has been extensively studied, but l...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gkp1009

    authors： Mercenne G,Bernacchi S,Richer D,Bec G,Henriet S,Paillart JC,Marquet R

    更新日期：2010-01-01 00:00:00

  • A new restriction endonuclease from Acetobacter pasteurianus.

    abstract：:A restriction endonuclease, ApaI, has been partially purified from Acetobacter pasteurianus. This enzyme cleaves bacteriophage lambda DNA and Simian virus 40 DNA at one site, adenovirus-2 DNA at more than nine sites, but it does not cleave phi X174 DNA nor plasmid pBR322 DNA. This enzyme recognizes the sequence (formu...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/11.13.4409

    authors： Seurinck J,Van de Voorde A,Van Montagu M

    更新日期：1983-07-11 00:00:00

  • The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.

    abstract：:The Orthologous Matrix (OMA) is a leading resource to relate genes across many species from all of life. In this update paper, we review the recent algorithmic improvements in the OMA pipeline, describe increases in species coverage (particularly in plants and early-branching eukaryotes) and introduce several new feat...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gkx1019

    authors： Altenhoff AM,Glover NM,Train CM,Kaleb K,Warwick Vesztrocy A,Dylus D,de Farias TM,Zile K,Stevenson C,Long J,Redestig H,Gonnet GH,Dessimoz C

    更新日期：2018-01-04 00:00:00

  • Differential sensitivity to methylated DNA by ETS-family transcription factors is intrinsically encoded in their DNA-binding domains.

    abstract：:Transactivation by the ETS family of transcription factors, whose members share structurally conserved DNA-binding domains, is variably sensitive to methylation of their target genes. The mechanism by which DNA methylation controls ETS proteins remains poorly understood. Uncertainly also pervades the effects of hemi-m...

    journal_title：Nucleic acids research

    pub_type： 杂志文章

    doi：10.1093/nar/gkw528

    authors： Stephens DC,Poon GM

    更新日期：2016-10-14 00:00:00