Dissecting the catalytic triad of a serine protease.

Abstract:

:Serine proteases are present in virtually all organisms and function both inside and outside the cell; they exist as two families, the 'trypsin-like' and the 'subtilisin-like', that have independently evolved a similar catalytic device characterized by the Ser, His, Asp triad, an oxyanion binding site, and possibly other determinants that stabilize the transition state (Fig. 1). For Bacillus amyloliquefaciens subtilisin, these functional elements impart a total rate enhancement of at least 10(9) to 10(10) times the non-enzymatic hydrolysis of amide bonds. We have examined the catalytic importance and interplay between residues within the catalytic triad by individual or multiple replacement with alanine(s), using site-directed mutagenesis of the cloned B. amyloliquefaciens subtilisin gene. Alanine substitutions were chosen to minimize unfavourable steric contacts and to avoid imposing new charge interactions or hydrogen bonds from the substituted side chains. In contrast to the effect of mutations in residues involved in substrate binding, the mutations in the catalytic triad greatly reduce the turnover number and cause only minor effects on the Michaelis constant. Kinetic analyses of the multiple mutants demonstrate that the residues within the triad interact synergistically to accelerate amide bond hydrolysis by a factor of approximately 2 X 10(6).

journal_name

Nature

journal_title

Nature

authors

Carter P,Wells JA

doi

10.1038/332564a0

subject

Has Abstract

pub_date

1988-04-07 00:00:00

pages

564-8

issue

6164

eissn

0028-0836

issn

1476-4687

journal_volume

332

pub_type

杂志文章

相关文献

NATURE文献大全
  • A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans.

    abstract::How left/right functional asymmetry is layered on top of an anatomically symmetrical nervous system is poorly understood. In the nematode Caenorhabditis elegans, two morphologically bilateral taste receptor neurons, ASE left (ASEL) and ASE right (ASER), display a left/right asymmetrical expression pattern of putative ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature02255

    authors: Johnston RJ,Hobert O

    更新日期:2003-12-18 00:00:00

  • Reconstitution of the tubular endoplasmic reticulum network with purified components.

    abstract::Organelles display characteristic morphologies that are intimately tied to their cellular function, but how organelles are shaped is poorly understood. The endoplasmic reticulum is particularly intriguing, as it comprises morphologically distinct domains, including a dynamic network of interconnected membrane tubules....

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature21387

    authors: Powers RE,Wang S,Liu TY,Rapoport TA

    更新日期:2017-03-09 00:00:00

  • Diverse polarization angle swings from a repeating fast radio burst source.

    abstract::Fast radio bursts (FRBs) are millisecond-duration radio transients1,2 of unknown origin. Two possible mechanisms that could generate extremely coherent emission from FRBs invoke neutron star magnetospheres3-5 or relativistic shocks far from the central energy source6-8. Detailed polarization observations may help us t...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2827-2

    authors: Luo R,Wang BJ,Men YP,Zhang CF,Jiang JC,Xu H,Wang WY,Lee KJ,Han JL,Zhang B,Caballero RN,Chen MZ,Chen XL,Gan HQ,Guo YJ,Hao LF,Huang YX,Jiang P,Li H,Li J,Li ZX,Luo JT,Pan J,Pei X,Qian L,Sun JH,Wang M,Wa

    更新日期:2020-10-01 00:00:00

  • Methanotrophic symbionts provide carbon for photosynthesis in peat bogs.

    abstract::Wetlands are the largest natural source of atmospheric methane, the second most important greenhouse gas. Methane flux to the atmosphere depends strongly on the climate; however, by far the largest part of the methane formed in wetland ecosystems is recycled and does not reach the atmosphere. The biogeochemical contro...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature03802

    authors: Raghoebarsing AA,Smolders AJ,Schmid MC,Rijpstra WI,Wolters-Arts M,Derksen J,Jetten MS,Schouten S,Sinninghe Damsté JS,Lamers LP,Roelofs JG,Op den Camp HJ,Strous M

    更新日期:2005-08-25 00:00:00

  • Enamel proteome shows that Gigantopithecus was an early diverging pongine.

    abstract::Gigantopithecus blacki was a giant hominid that inhabited densely forested environments of Southeast Asia during the Pleistocene epoch1. Its evolutionary relationships to other great ape species, and the divergence of these species during the Middle and Late Miocene epoch (16-5.3 million years ago), remain unclear2,3....

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-019-1728-8

    authors: Welker F,Ramos-Madrigal J,Kuhlwilm M,Liao W,Gutenbrunner P,de Manuel M,Samodova D,Mackie M,Allentoft ME,Bacon AM,Collins MJ,Cox J,Lalueza-Fox C,Olsen JV,Demeter F,Wang W,Marques-Bonet T,Cappellini E

    更新日期:2019-12-01 00:00:00

  • Novel cell cycle control of RNA synthesis in yeast.

    abstract::During the fission yeast cell cycle, the rate of polyadenylated messenger RNA synthesis doubles when the cell reaches a critical size. This size-related control maintains average mRNA content in balance with total cell mass during exponential growth, even in cells growing at different absolute growth rates per cell. ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/271726a0

    authors: Fraser RS,Nurse P

    更新日期:1978-02-23 00:00:00

  • The PIE-1 protein and germline specification in C. elegans embryos.

    abstract::Totipotent germline blastomeres in Caenorhabditis elegans contain, but do not respond to, factors that promote somatic differentiation in other embryonic cells. Mutations in the maternal gene pie-1 result in the germline blastomeres adopting somatic cell fates. Here we show that pie-1 encodes a nuclear protein, PIE-1,...

    journal_title:Nature

    pub_type: 信件

    doi:10.1038/382710a0

    authors: Mello CC,Schubert C,Draper B,Zhang W,Lobel R,Priess JR

    更新日期:1996-08-22 00:00:00

  • The Schistosoma japonicum genome reveals features of host-parasite interplay.

    abstract::Schistosoma japonicum is a parasitic flatworm that causes human schistosomiasis, which is a significant cause of morbidity in China and the Philippines. Here we present a draft genomic sequence for the worm. The genome provides a global insight into the molecular architecture and host interaction of this complex metaz...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature08140

    authors: Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium.

    更新日期:2009-07-16 00:00:00

  • Solution structure of a minor and transiently formed state of a T4 lysozyme mutant.

    abstract::Proteins are inherently plastic molecules, whose function often critically depends on excursions between different molecular conformations (conformers). However, a rigorous understanding of the relation between a protein's structure, dynamics and function remains elusive. This is because many of the conformers on its ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature10349

    authors: Bouvignies G,Vallurupalli P,Hansen DF,Correia BE,Lange O,Bah A,Vernon RM,Dahlquist FW,Baker D,Kay LE

    更新日期:2011-08-21 00:00:00

  • Rock legend retells the race to the Moon - in 3D.

    abstract:: ...

    journal_title:Nature

    pub_type: 新闻

    doi:10.1038/d41586-018-07342-9

    authors: Chiao M

    更新日期:2018-11-01 00:00:00

  • Origin of Thy-1+ dendritic epidermal cells of adult mice from fetal thymic precursors.

    abstract::The skin of mice contains dendritic epidermal cells carrying the Thy-1 antigen (Thy-1+ dEC) which express antigen receptors composed of the T-cell antigen receptor (TCR) gamma- and delta-chains. Although the role of the thymus in the generation of most T cells is well established, the involvement of the thymus in the ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/344068a0

    authors: Havran WL,Allison JP

    更新日期:1990-03-01 00:00:00

  • Sound velocity of CaSiO3 perovskite suggests the presence of basaltic crust in the Earth's lower mantle.

    abstract::Laboratory measurements of sound velocities of high-pressure minerals provide crucial information on the composition and constitution of the deep mantle via comparisons with observed seismic velocities. Calcium silicate (CaSiO3) perovskite (CaPv) is a high-pressure phase that occurs at depths greater than about 560 ki...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-018-0816-5

    authors: Gréaux S,Irifune T,Higo Y,Tange Y,Arimoto T,Liu Z,Yamada A

    更新日期:2019-01-01 00:00:00

  • In vitro centromere and kinetochore assembly on defined chromatin templates.

    abstract::During cell division, chromosomes are segregated to nascent daughter cells by attaching to the microtubules of the mitotic spindle through the kinetochore. Kinetochores are assembled on a specialized chromatin domain called the centromere, which is characterized by the replacement of nucleosomal histone H3 with the hi...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature10379

    authors: Guse A,Carroll CW,Moree B,Fuller CJ,Straight AF

    更新日期:2011-08-28 00:00:00

  • Telomerase reactivation reverses tissue degeneration in aged telomerase-deficient mice.

    abstract::An ageing world population has fuelled interest in regenerative remedies that may stem declining organ function and maintain fitness. Unanswered is whether elimination of intrinsic instigators driving age-associated degeneration can reverse, as opposed to simply arrest, various afflictions of the aged. Such instigator...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature09603

    authors: Jaskelioff M,Muller FL,Paik JH,Thomas E,Jiang S,Adams AC,Sahin E,Kost-Alimova M,Protopopov A,Cadiñanos J,Horner JW,Maratos-Flier E,Depinho RA

    更新日期:2011-01-06 00:00:00

  • Mice deficient for p53 are developmentally normal but susceptible to spontaneous tumours.

    abstract::Mutations in the p53 tumour-suppressor gene are the most frequently observed genetic lesions in human cancers. To investigate the role of the p53 gene in mammalian development and tumorigenesis, a null mutation was introduced into the gene by homologous recombination in murine embryonic stem cells. Mice homozygous for...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/356215a0

    authors: Donehower LA,Harvey M,Slagle BL,McArthur MJ,Montgomery CA Jr,Butel JS,Bradley A

    更新日期:1992-03-19 00:00:00

  • The impact and recovery of asteroid 2008 TC(3).

    abstract::In the absence of a firm link between individual meteorites and their asteroidal parent bodies, asteroids are typically characterized only by their light reflection properties, and grouped accordingly into classes. On 6 October 2008, a small asteroid was discovered with a flat reflectance spectrum in the 554-995 nm wa...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature07920

    authors: Jenniskens P,Shaddad MH,Numan D,Elsir S,Kudoda AM,Zolensky ME,Le L,Robinson GA,Friedrich JM,Rumble D,Steele A,Chesley SR,Fitzsimmons A,Duddy S,Hsieh HH,Ramsay G,Brown PG,Edwards WN,Tagliaferri E,Boslough MB,Spaldi

    更新日期:2009-03-26 00:00:00

  • Photonic structures in biology.

    abstract::Millions of years before we began to manipulate the flow of light using synthetic structures, biological systems were using nanometre-scale architectures to produce striking optical effects. An astonishing variety of natural photonic structures exists: a species of Brittlestar uses photonic elements composed of calcit...

    journal_title:Nature

    pub_type: 杂志文章,评审

    doi:10.1038/nature01941

    authors: Vukusic P,Sambles JR

    更新日期:2003-08-14 00:00:00

  • Bidirectional perisomatic inhibitory plasticity of a Fos neuronal network.

    abstract::Behavioural experiences activate the FOS transcription factor in sparse populations of neurons that are critical for encoding and recalling specific events1-3. However, there is limited understanding of the mechanisms by which experience drives circuit reorganization to establish a network of Fos-activated cells. It i...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-3031-0

    authors: Yap EL,Pettit NL,Davis CP,Nagy MA,Harmin DA,Golden E,Dagliyan O,Lin C,Rudolph S,Sharma N,Griffith EC,Harvey CD,Greenberg ME

    更新日期:2020-12-09 00:00:00

  • Loss of p53 triggers WNT-dependent systemic inflammation to drive breast cancer metastasis.

    abstract::Cancer-associated systemic inflammation is strongly linked to poor disease outcome in patients with cancer1,2. For most human epithelial tumour types, high systemic neutrophil-to-lymphocyte ratios are associated with poor overall survival3, and experimental studies have demonstrated a causal relationship between neutr...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-019-1450-6

    authors: Wellenstein MD,Coffelt SB,Duits DEM,van Miltenburg MH,Slagter M,de Rink I,Henneman L,Kas SM,Prekovic S,Hau CS,Vrijland K,Drenth AP,de Korte-Grimmerink R,Schut E,van der Heijden I,Zwart W,Wessels LFA,Schumacher TN,Jonk

    更新日期:2019-08-01 00:00:00

  • Collisional cooling of ultracold molecules.

    abstract::Since the original work on Bose-Einstein condensation1,2, the use of quantum degenerate gases of atoms has enabled the quantum emulation of important systems in condensed matter and nuclear physics, as well as the study of many-body states that have no analogue in other fields of physics3. Ultracold molecules in the m...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2141-z

    authors: Son H,Park JJ,Ketterle W,Jamison AO

    更新日期:2020-04-01 00:00:00

  • An optimal bronchial tree may be dangerous.

    abstract::The geometry and dimensions of branched structures such as blood vessels or airways are important factors in determining the efficiency of physiological processes. It has been shown that fractal trees can be space filling and can ensure minimal dissipation. The bronchial tree of most mammalian lungs is a good example ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature02287

    authors: Mauroy B,Filoche M,Weibel ER,Sapoval B

    更新日期:2004-02-12 00:00:00

  • A black-hole mass measurement from molecular gas kinematics in NGC4526.

    abstract::The masses of the supermassive black holes found in galaxy bulges are correlated with a multitude of galaxy properties, leading to suggestions that galaxies and black holes may evolve together. The number of reliably measured black-hole masses is small, and the number of methods for measuring them is limited, holding ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature11819

    authors: Davis TA,Bureau M,Cappellari M,Sarzi M,Blitz L

    更新日期:2013-02-21 00:00:00

  • Visualizing transient events in amino-terminal autoprocessing of HIV-1 protease.

    abstract::HIV-1 protease processes the Gag and Gag-Pol polyproteins into mature structural and functional proteins, including itself, and is therefore indispensable for viral maturation. The mature protease is active only as a dimer with each subunit contributing catalytic residues. The full-length transframe region protease pr...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature07342

    authors: Tang C,Louis JM,Aniana A,Suh JY,Clore GM

    更新日期:2008-10-02 00:00:00

  • G-protein beta gamma-subunits activate the cardiac muscarinic K+-channel via phospholipase A2.

    abstract::Muscarinic receptors of cardiac pacemaker and atrial cells are linked to a potassium channel (IK.ACh) by a pertussis toxin-sensitive GTP-binding protein. The dissociation of G-proteins leads to the generation of two potential transducing elements, alpha-GTP and beta gamma. IK.ACh is activated by G-protein alpha- and b...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/337557a0

    authors: Kim D,Lewis DL,Graziadei L,Neer EJ,Bar-Sagi D,Clapham DE

    更新日期:1989-02-09 00:00:00

  • Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.

    abstract::The aspergilli comprise a diverse group of filamentous fungi spanning over 200 million years of evolution. Here we report the genome sequence of the model organism Aspergillus nidulans, and a comparative study with Aspergillus fumigatus, a serious human pathogen, and Aspergillus oryzae, used in the production of sake,...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature04341

    authors: Galagan JE,Calvo SE,Cuomo C,Ma LJ,Wortman JR,Batzoglou S,Lee SI,Baştürkmen M,Spevak CC,Clutterbuck J,Kapitonov V,Jurka J,Scazzocchio C,Farman M,Butler J,Purcell S,Harris S,Braus GH,Draht O,Busch S,D'Enfert C,Bou

    更新日期:2005-12-22 00:00:00

  • Astronomy (communication arising): black holes, fleas and microlithography.

    abstract::Fresnel lenses allow almost perfect imaging in widely different circumstances, but their focus is perfect only for a single wavelength. Wang et al. have shown how the effective bandpass may be widened for X-ray microscopy by using a compound diffractive/refractive lens near to an absorption edge. A compound lens has a...

    journal_title:Nature

    pub_type: 评论,杂志文章

    doi:10.1038/426245b

    authors: Skinner G,Gorenstein P

    更新日期:2003-11-20 00:00:00

  • The global distribution of clinical episodes of Plasmodium falciparum malaria.

    abstract::Interest in mapping the global distribution of malaria is motivated by a need to define populations at risk for appropriate resource allocation and to provide a robust framework for evaluating its global economic impact. Comparison of older and more recent malaria maps shows how the disease has been geographically res...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature03342

    authors: Snow RW,Guerra CA,Noor AM,Myint HY,Hay SI

    更新日期:2005-03-10 00:00:00

  • Multiplicative computation in a visual neuron sensitive to looming.

    abstract::Multiplicative operations are important in sensory processing, but their biophysical implementation remains largely unknown. We investigated an identified neuron (the lobula giant movement detector, LGMD, of locusts) whose output firing rate in response to looming visual stimuli has been described by two models, one o...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature01190

    authors: Gabbiani F,Krapp HG,Koch C,Laurent G

    更新日期:2002-11-21 00:00:00

  • Recognition determinants of broadly neutralizing human antibodies against dengue viruses.

    abstract::Dengue disease is caused by four different flavivirus serotypes, which infect 390 million people yearly with 25% symptomatic cases and for which no licensed vaccine is available. Recent phase III vaccine trials showed partial protection, and in particular no protection for dengue virus serotype 2 (refs 3, 4). Structur...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature14130

    authors: Rouvinski A,Guardado-Calvo P,Barba-Spaeth G,Duquerroy S,Vaney MC,Kikuti CM,Navarro Sanchez ME,Dejnirattisai W,Wongwiwat W,Haouz A,Girard-Blanc C,Petres S,Shepard WE,Desprès P,Arenzana-Seisdedos F,Dussart P,Mongkolsapaya J

    更新日期:2015-04-02 00:00:00

  • Identification of an angiogenic mitogen selective for endocrine gland endothelium.

    abstract::The known endothelial mitogens stimulate growth of vascular endothelial cells without regard to their tissue of origin. Here we report a growth factor that is expressed largely in one type of tissue and acts selectively on one type of endothelium. This molecule, called endocrine-gland-derived vascular endothelial grow...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/35091000

    authors: LeCouter J,Kowalski J,Foster J,Hass P,Zhang Z,Dillard-Telm L,Frantz G,Rangell L,DeGuzman L,Keller GA,Peale F,Gurney A,Hillan KJ,Ferrara N

    更新日期:2001-08-30 00:00:00