Comprehensive Analysis of the Expression and Prognosis for GBPs in Head and neck squamous cell carcinoma.

Abstract:

:Guanylate binding proteins (GBPs) belongs to the interferons (IFNs) induced guanylate-binding protein family (Guanosine triphosphatases, GTPases) consisting of seven homologous members, termed GBP1 to GBP7. We used multidimensional survey ways to explore GBPs expression, regulation, mutations, immune infiltration and functional networks in head and neck squamous cell carcinoma (HNSCC) patient data based on various open databases. The study provides staggered evidence for the significance of GBPs in HNSCC and its potential role as a novel biomarker. Our results showed that over expressions of 7 GBPs members and multivariate analysis suggested that N-stage, high expressions of GBP1 and low expression of GBP6/7 were linked to shorter OS in HNSCC patients. In addition, B cells of immune infiltrates stimulant the prognosis and might have a medical prognostic significance linked to GBPs in HNSCC. We assume that GBPs play a synergistic role in the viral related HNSCC. Our results show that data mining efficiently reveals information about GBPs expression in HNSCC and more importance lays a foundation for further research on the role of GBPs in cancers.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Wu ZH,Cai F,Zhong Y

doi

10.1038/s41598-020-63246-7

subject

Has Abstract

pub_date

2020-04-08 00:00:00

pages

6085

issue

1

issn

2045-2322

pii

10.1038/s41598-020-63246-7

journal_volume

10

pub_type

杂志文章
  • Author Correction: Androgen receptor is a potential novel prognostic marker and oncogenic target in osteosarcoma with dependence on CDK11.

    abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-018-30644-x

    authors: Liao Y,Sassi S,Halvorsen S,Feng Y,Shen J,Gao Y,Cote G,Choy E,Harmon D,Mankin H,Hornicek F,Duan Z

    更新日期:2018-08-09 00:00:00

  • A novel optical thermometry based on the energy transfer from charge transfer band to Eu3+-Dy3+ ions.

    abstract::Optical thermometry based on the up-conversion intensity ratio of thermally coupled levels of rare earth ions has been widely studied to achieve an inaccessible temperature measurement in submicron scale. In this work, a novel optical temperature sensing strategy based on the energy transfer from charge transfer bands...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-06421-7

    authors: Wang J,Bu Y,Wang X,Seo HJ

    更新日期:2017-07-20 00:00:00

  • Classes of low-frequency earthquakes based on inter-time distribution reveal a precursor event for the 2011 Great Tohoku Earthquake.

    abstract::Recently, slow earthquakes (slow EQ) have received much attention relative to understanding the mechanisms underlying large earthquakes and to detecting their precursors. Low-frequency earthquakes (LFE) are a specific type of slow EQ. In the present paper, we reveal the relevance of LFEs to the 11 March 2011 Great Toh...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45765-0

    authors: Tokuda T,Shimada H

    更新日期:2019-06-27 00:00:00

  • Accumulation of organic C components in soil and aggregates.

    abstract::To explore soil organic carbon (SOC) accumulation mechanisms, the dynamics of C functional groups and macroaggregation were studied synchronously through aggregate fractionation and (13)C NMR spectroscopy in sandy loam soil following an 18-year application of compost and fertilizer in China. Compared with no fertilize...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep13804

    authors: Yu H,Ding W,Chen Z,Zhang H,Luo J,Bolan N

    更新日期:2015-09-11 00:00:00

  • Acoustic illusion near boundaries of arbitrary curved geometry.

    abstract::We have proposed a scheme and presented the first experimental demonstration of acoustic illusion, by using anisotropic metamaterials to manipulate the acoustic field near boundaries of arbitrary curved geometry. Numerical simulations and experimental results show that in the presence of an illusion cloak, any object ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep01427

    authors: Kan W,Liang B,Zhu X,Li R,Zou X,Wu H,Yang J,Cheng J

    更新日期:2013-01-01 00:00:00

  • Plasmon-Enhanced Photocurrent using Gold Nanoparticles on a Three-Dimensional TiO2 Nanowire-Web Electrode.

    abstract::In this study, an anatase/rutile mixed-phase titanium dioxide (TiO2) hierarchical network deposited with Au nanoparticles (Au/TiO2 ARHN) was synthesized using a facile hydrothermal method followed by a simple calcination step. Such a unique structure was designed for improving the light harvest, charge transportation/...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep42524

    authors: Yen YC,Chen JA,Ou S,Chen YS,Lin KJ

    更新日期:2017-02-10 00:00:00

  • Investigation of the Roles of Plasma Species Generated by Surface Dielectric Barrier Discharge.

    abstract::As an emerging sterilization technology, cold atmospheric plasma offers a dry, non-thermal, rapid process that is minimally damaging to a majority of substrates. However, the mechanisms by which plasma interacts with living cells are poorly understood and the plasma generation apparatuses are complex and resource-inte...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35166-0

    authors: Pai K,Timmons C,Roehm KD,Ngo A,Narayanan SS,Ramachandran A,Jacob JD,Ma LM,Madihally SV

    更新日期:2018-11-12 00:00:00

  • Sampling of the conformational landscape of small proteins with Monte Carlo methods.

    abstract::Computer simulation provides an increasingly realistic picture of large-scale conformational change of proteins, but investigations remain fundamentally constrained by the femtosecond timestep of molecular dynamics simulations. For this reason, many biologically interesting questions cannot be addressed using accessib...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-75239-7

    authors: Heilmann N,Wolf M,Kozlowska M,Sedghamiz E,Setzler J,Brieg M,Wenzel W

    更新日期:2020-10-23 00:00:00

  • The induced by an electromagnetic field coexistence of types I and II spectra in Weyl semimetals.

    abstract::Due to their unique properties, Weyl semimetals (WSMs) are promising materials for the future electronics. Currently, the two types (I and II) of WSMs are discovered experimentally. These types of WSMs differ from each other in their topological properties. In this paper we showed that a coexistence of types I and II ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-32104-y

    authors: Alisultanov ZZ

    更新日期:2018-09-12 00:00:00

  • The effect of lattice disorder on the low-temperature heat capacity of (U1-yThy)O2 and 238Pu-doped UO2.

    abstract::The low-temperature heat capacity of (U1-yThy)O2 and 238Pu-doped UO2 samples were determined using hybrid adiabatic relaxation calorimetry. Results of the investigated systems revealed the presence of the magnetic transition specific for UO2 in all three intermediate compositions of the uranium-thorium dioxide (y = 0....

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-51476-3

    authors: Vălu SO,De Bona E,Popa K,Griveau JC,Colineau E,Konings RJM

    更新日期:2019-10-21 00:00:00

  • Fractional tunnelling resonance in plasmonic media.

    abstract::Metals can transmit light by tunnelling when they possess skin-depth thickness. Tunnelling can be resonantly enhanced if resonators are added to each side of a metal film, such as additional dielectric layers or periodic structures on a metal surface. Here we show that, even with no additional resonators, tunnelling r...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep02423

    authors: Kang JH,Park QH

    更新日期:2013-01-01 00:00:00

  • Progress towards non-invasive diagnosis and follow-up of celiac disease in children; a prospective multicentre study to the usefulness of plasma I-FABP.

    abstract::This prospective study investigates whether measurement of plasma intestinal-fatty acid binding protein (I-FABP), a sensitive marker for small intestinal epithelial damage, improves non-invasive diagnosing of celiac disease (CD), and whether I-FABP levels are useful to evaluate mucosal healing in patients on a gluten-...

    journal_title:Scientific reports

    pub_type: 杂志文章,多中心研究

    doi:10.1038/s41598-017-07242-4

    authors: Adriaanse MPM,Mubarak A,Riedl RG,Ten Kate FJW,Damoiseaux JGMC,Buurman WA,Houwen RHJ,Vreugdenhil ACE,Celiac Disease Study Group.

    更新日期:2017-08-17 00:00:00

  • Phase-reference monitoring in coherent-state discrimination assisted by a photon-number resolving detector.

    abstract::Phase estimation represents a crucial challenge in many fields of Physics, ranging from Quantum Metrology to Quantum Information Processing. This task is usually pursued by means of interferometric schemes, in which the choice of the input states and of the detection apparatus is aimed at minimizing the uncertainty in...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep26025

    authors: Bina M,Allevi A,Bondani M,Olivares S

    更新日期:2016-05-18 00:00:00

  • 3D-QSAR and docking studies of flavonoids as potent Escherichia coli inhibitors.

    abstract::Flavonoids are potential antibacterial agents. However, key substituents and mechanism for their antibacterial activity have not been fully investigated. The quantitative structure-activity relationship (QSAR) and molecular docking of flavonoids relating to potent anti-Escherichia coli agents were investigated. Compar...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep23634

    authors: Fang Y,Lu Y,Zang X,Wu T,Qi X,Pan S,Xu X

    更新日期:2016-04-06 00:00:00

  • Targeted Exome Sequencing of Congenital Cataracts Related Genes: Broadening the Mutation Spectrum and Genotype-Phenotype Correlations in 27 Chinese Han Families.

    abstract::Congenital cataract is the most frequent inherited ocular disorder and the most leading cause of lifelong visual loss. The screening of pathogenic mutations can be very challenging in some cases, for congenital cataracts are clinically and genetically heterogeneous diseases. The aim of this study is to investigate the...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-01182-9

    authors: Zhai Y,Li J,Yu W,Zhu S,Yu Y,Wu M,Sun G,Gong X,Yao K

    更新日期:2017-04-27 00:00:00

  • The browning and re-browning of lakes: Divergent lake-water organic carbon trends linked to acid deposition and climate change.

    abstract::Dissolved organic carbon (DOC) concentrations and water colour are increasing in many inland waters across northern Europe and northeastern North America. This inland-water "browning" has profound physical, chemical and biological repercussions for aquatic ecosystems affecting water quality, biological community struc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-52912-0

    authors: Meyer-Jacob C,Michelutti N,Paterson AM,Cumming BF,Keller WB,Smol JP

    更新日期:2019-11-13 00:00:00

  • Paternal spatial training enhances offspring's cognitive performance and synaptic plasticity in wild-type but not improve memory deficit in Alzheimer's mice.

    abstract::Recent studies suggest that spatial training can maintain associative memory capacity in Tg2576 mice, but it is not known whether the beneficial effects can be inherited from the trained fathers to their offspring. Here, we exposed male wild-type and male 3XTg Alzheimer disease (AD) mice (3-m old) respectively to spat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-01811-3

    authors: Zhang S,Li X,Wang Z,Liu Y,Gao Y,Tan L,Liu E,Zhou Q,Xu C,Wang X,Liu G,Chen H,Wang JZ

    更新日期:2017-05-08 00:00:00

  • Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems.

    abstract::In this study, we categorize the microbial community in mangrove sediment samples from four different locations within a vast mangrove system in Kerala, India. We compared this data to other samples taken from the other known mangrove data, a tropical rainforest, and ocean sediment. An examination of the microbial com...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09254-6

    authors: Imchen M,Kumavath R,Barh D,Azevedo V,Ghosh P,Viana M,Wattam AR

    更新日期:2017-08-18 00:00:00

  • Active Terahertz Chiral Metamaterials Based on Phase Transition of Vanadium Dioxide (VO2).

    abstract::Compared with natural materials, chiral metamaterials have been demonstrated with orders of magnitude stronger chiroptical response, which provides the basis for applications such as ultracompact polarization components and plasmonic-enhanced biosensing. Terahertz chiral metamaterials that allow dynamic polarization c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-18472-x

    authors: Wang S,Kang L,Werner DH

    更新日期:2018-01-09 00:00:00

  • Effect of non-linearity of a predictor on the shape and magnitude of its receiver-operating-characteristic curve in predicting a binary outcome.

    abstract::Area under a receiver-operating-characteristic (AUROC) curve is widely used in medicine to summarize the ability of a continuous predictive marker to predict a binary outcome. This study illustrated how a U-shaped or inverted U-shaped continuous predictor would affect the shape and magnitude of its AUROC curve in pred...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-10408-9

    authors: Ho KM

    更新日期:2017-08-31 00:00:00

  • Peritumoral and intratumoral radiomic features predict survival outcomes among patients diagnosed in lung cancer screening.

    abstract::The National Lung Screening Trial (NLST) demonstrated that screening with low-dose computed tomography (LDCT) is associated with a 20% reduction in lung cancer mortality. One potential limitation of LDCT screening is overdiagnosis of slow growing and indolent cancers. In this study, peritumoral and intratumoral radiom...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67378-8

    authors: Pérez-Morales J,Tunali I,Stringfield O,Eschrich SA,Balagurunathan Y,Gillies RJ,Schabath MB

    更新日期:2020-06-29 00:00:00

  • Generic Emergence of Modularity in Spatial Networks.

    abstract::Landscape's spatial structure has vast implications for the dynamics and distribution of species populations and ecological communities. However, the characterization of the structure of spatial networks has not received nearly as much attention as networks of species interactions counterparts. Recent experiments show...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-65669-8

    authors: Gilarranz LJ

    更新日期:2020-05-26 00:00:00

  • Phenylalanine ammonia-lyase2.1 contributes to the soybean response towards Phytophthora sojae infection.

    abstract::Phytophthora root and stem rot of soybean [Glycine max (L.) Merr.] caused by Phytophthora sojae is a destructive disease worldwide. Phenylalanine ammonia-lyase (PAL) is one of the most extensively studied enzymes related to plant responses to biotic and abiotic stresses. However, the molecular mechanism of PAL in soyb...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07832-2

    authors: Zhang C,Wang X,Zhang F,Dong L,Wu J,Cheng Q,Qi D,Yan X,Jiang L,Fan S,Li N,Li D,Xu P,Zhang S

    更新日期:2017-08-03 00:00:00

  • Charge disproportionation and nano phase separation in [Formula: see text].

    abstract::We have successfully grown centimeter-sized layered [Formula: see text] single crystals under high oxygen pressures of 120-150 bar by the floating zone technique. This enabled us to perform neutron scattering experiments where we observe close to quarter-integer magnetic peaks below [Formula: see text] that are accomp...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-74884-2

    authors: Guo H,Li ZW,Chang CF,Hu Z,Kuo CY,Perring TG,Schmidt W,Piovano A,Schmalzl K,Walker HC,Lin HJ,Chen CT,Blanco-Canosa S,Schlappa J,Schüßler-Langeheine C,Hansmann P,Khomskii DI,Tjeng LH,Komarek AC

    更新日期:2020-10-22 00:00:00

  • Health effect of agricultural pesticide use in China: implications for the development of GM crops.

    abstract::It is notable that the adoption of GM glyphosate-tolerant crops increases glyphosate use but reduces non-glyphosate herbicide use; and adoption of GM insect-resistant crops significantly reduces insecticide use. While the health hazard of pesticide use has been well documented, little literature evaluates the health e...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep34918

    authors: Zhang C,Hu R,Huang J,Huang X,Shi G,Li Y,Yin Y,Chen Z

    更新日期:2016-10-10 00:00:00

  • Characterization of a new N-terminally acetylated extra-mitochondrial isoform of frataxin in human erythrocytes.

    abstract::Frataxin is a highly conserved protein encoded by the frataxin (FXN) gene. The full-length 210-amino acid form of protein frataxin (1-210; isoform A) expressed in the cytosol of cells rapidly translocates to the mitochondria, where it is converted to the mature form (81-210) by mitochondrial processing peptidase. Matu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35346-y

    authors: Guo L,Wang Q,Weng L,Hauser LA,Strawser CJ,Mesaros C,Lynch DR,Blair IA

    更新日期:2018-11-19 00:00:00

  • Genome-wide association analysis of hippocampal volume identifies enrichment of neurogenesis-related pathways.

    abstract::Adult neurogenesis occurs in the dentate gyrus of the hippocampus during adulthood and contributes to sustaining the hippocampal formation. To investigate whether neurogenesis-related pathways are associated with hippocampal volume, we performed gene-set enrichment analysis using summary statistics from a large-scale ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-50507-3

    authors: Horgusluoglu-Moloch E,Risacher SL,Crane PK,Hibar D,Thompson PM,Saykin AJ,Nho K,Alzheimer’s Disease Neuroimaging Initiative (ADNI).

    更新日期:2019-10-10 00:00:00

  • Interface engineering of graphene for universal applications as both anode and cathode in organic photovoltaics.

    abstract::The high transparency of graphene, together with its good electrical conductivity and mechanical robustness, enable its use as transparent electrodes in optoelectronic devices such as solar cells. While initial demonstrations of graphene-based organic photovoltaics (OPV) have been promising, realization of scalable te...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep01581

    authors: Park H,Chang S,Smith M,Gradečak S,Kong J

    更新日期:2013-01-01 00:00:00

  • Repeated social defeat stress impairs attentional set shifting irrespective of social avoidance and increases female preference associated with heightened anxiety.

    abstract::Repeated social defeat stress (R-SDS) induces multiple behavioral changes in mice. However, the relationships between these behavioral changes were not fully understood. In the first experiment, to examine how the social avoidance is related to R-SDS-impaired behavioral flexibility, 10-week-old male C57BL/6N mice rece...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-28803-1

    authors: Higashida S,Nagai H,Nakayama K,Shinohara R,Taniguchi M,Nagai M,Hikida T,Yawata S,Ago Y,Kitaoka S,Narumiya S,Furuyashiki T

    更新日期:2018-07-11 00:00:00

  • A simple optimization approach for improving target dose homogeneity in intensity-modulated radiotherapy for sinonasal cancer.

    abstract::Homogeneous target dose distribution in intensity-modulated radiotherapy (IMRT) for sinonasal cancer (SNC) is challenging to achieve. To solve this problem, we established and evaluated a basal-dose-compensation (BDC) optimization approach, in which the treatment plan is further optimized based on the initial plans. G...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15361

    authors: Lu JY,Zhang JY,Li M,Cheung ML,Li YK,Zheng J,Huang BT,Zhang WZ

    更新日期:2015-10-26 00:00:00