Skewed distribution of leaf color RGB model and application of skewed parameters in leaf color description model.

Abstract:

Background:Image processing techniques have been widely used in the analysis of leaf characteristics. Earlier techniques for processing digital RGB color images of plant leaves had several drawbacks, such as inadequate de-noising, and adopting normal-probability statistical estimation models which have few parameters and limited applicability. Results:We confirmed the skewness distribution characteristics of the red, green, blue and grayscale channels of the images of tobacco leaves. Twenty skewed-distribution parameters were computed including the mean, median, mode, skewness, and kurtosis. We used the mean parameter to establish a stepwise regression model that is similar to earlier models. Other models based on the median and the skewness parameters led to accurate RGB-based description and prediction, as well as better fitting of the SPAD value. More parameters improved the accuracy of RGB model description and prediction, and extended its application range. Indeed, the skewed-distribution parameters can describe changes of the leaf color depth and homogeneity. Conclusions:The color histogram of the blade images follows a skewed distribution, whose parameters greatly enrich the RGB model and can describe changes in leaf color depth and homogeneity.

journal_name

Plant Methods

journal_title

Plant methods

authors

Chen Z,Wang F,Zhang P,Ke C,Zhu Y,Cao W,Jiang H

doi

10.1186/s13007-020-0561-2

subject

Has Abstract

pub_date

2020-02-26 00:00:00

pages

23

issn

1746-4811

pii

561

journal_volume

16

pub_type

杂志文章
  • Barley callus: a model system for bioengineering of starch in cereals.

    abstract:BACKGROUND:Starch is the most important source of calories for human nutrition and the majority of it is produced by cereal farming. Starch is also used as a renewable raw material in a range of industrial sectors. It can be chemically modified to introduce new physicochemical properties. In this way starch is adapted ...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-8-36

    authors: Carciofi M,Blennow A,Nielsen MM,Holm PB,Hebelstrup KH

    更新日期:2012-09-07 00:00:00

  • Instantaneous and non-destructive relative water content estimation from deep learning applied to resonant ultrasonic spectra of plant leaves.

    abstract:Background:Non-contact resonant ultrasound spectroscopy (NC-RUS) has been proven as a reliable technique for the dynamic determination of leaf water status. It has been already tested in more than 50 plant species. In parallel, relative water content (RWC) is highly used in the ecophysiological field to describe the de...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0511-z

    authors: Fariñas MD,Jimenez-Carretero D,Sancho-Knapik D,Peguero-Pina JJ,Gil-Pelegrín E,Gómez Álvarez-Arenas T

    更新日期:2019-11-07 00:00:00

  • Use of the non-radioactive SUnSET method to detect decreased protein synthesis in proteasome inhibited Arabidopsis roots.

    abstract:BACKGROUND:In eukaryotic cells, the proteasome maintains homeostasis by selectively degrading regulatory and misfolded proteins, and in doing so contributes to the amino acid pool. Inhibition of the proteasome in yeast and human cells decreases de novo protein synthesis. However, it is not know if proteasome inhibition...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-016-0120-z

    authors: Van Hoewyk D

    更新日期:2016-03-16 00:00:00

  • Computer aided data acquisition tool for high-throughput phenotyping of plant populations.

    abstract:BACKGROUND:The data generated during a course of a biological experiment/study can be sometimes be massive and its management becomes quite critical for the success of the investigation undertaken. The accumulation and analysis of such large datasets often becomes tedious for biologists and lab technicians. Most of the...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-5-18

    authors: Vankadavath RN,Hussain AJ,Bodanapu R,Kharshiing E,Basha PO,Gupta S,Sreelakshmi Y,Sharma R

    更新日期:2009-12-10 00:00:00

  • The advantages and limitations of trait analysis with GWAS: a review.

    abstract::Over the last 10 years, high-density SNP arrays and DNA re-sequencing have illuminated the majority of the genotypic space for a number of organisms, including humans, maize, rice and Arabidopsis. For any researcher willing to define and score a phenotype across many individuals, Genome Wide Association Studies (GWAS)...

    journal_title:Plant methods

    pub_type: 杂志文章,评审

    doi:10.1186/1746-4811-9-29

    authors: Korte A,Farlow A

    更新日期:2013-07-22 00:00:00

  • Improved methodology for assaying brassinosteroids in plant tissues using magnetic hydrophilic material for both extraction and derivatization.

    abstract:BACKGROUND:Brassinosteriods (BRs) are a group of important phytohormones that have major effects on plant growth and development. To fully elucidate the function of BRs, a sensitive BR assay is required. However, most of the previously reported methods are tedious and time-consuming due to multiple pretreatment steps. ...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-10-39

    authors: Ding J,Wu JH,Liu JF,Yuan BF,Feng YQ

    更新日期:2014-11-24 00:00:00

  • Integrating field-based heat tents and cyber-physical system technology to phenotype high night-time temperature impact on winter wheat.

    abstract:Background:Many agronomic traits have been bred into modern wheat varieties, but wheat (Triticum aestivum L.) continues to be vulnerable to heat stress, with high night-time temperature (HNT) stress shown to have large negative impact on yield and quality. Global mean temperature during the day is consistently warming ...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0424-x

    authors: Hein NT,Wagner D,Bheemanahalli R,Šebela D,Bustamante C,Chiluwal A,Neilsen ML,Jagadish SVK

    更新日期:2019-04-24 00:00:00

  • Fluctuating light experiments and semi-automated plant phenotyping enabled by self-built growth racks and simple upgrades to the IMAGING-PAM.

    abstract:Background:Over the last years, several plant science labs have started to employ fluctuating growth light conditions to simulate natural light regimes more closely. Many plant mutants reveal quantifiable effects under fluctuating light despite being indistinguishable from wild-type plants under standard constant light...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0546-1

    authors: Schneider D,Lopez LS,Li M,Crawford JD,Kirchhoff H,Kunz HH

    更新日期:2019-12-23 00:00:00

  • An efficient transient expression system for gene function analysis in rose.

    abstract:Background:Roses are widely used as garden ornamental plants and cut flowers. Rosa chinensis cv 'Old Blush' has been used as a model genotype in rose studies due to its contribution to recurrent flowering and tea scent traits of modern roses. The deficiency of efficient genetic transformation systems is a handicap limi...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-017-0268-1

    authors: Lu J,Bai M,Ren H,Liu J,Wang C

    更新日期:2017-12-22 00:00:00

  • De novo assembly of potential linear artificial chromosome constructs capped with expansive telomeric repeats.

    abstract:BACKGROUND:Artificial chromosomes (ACs) are a promising next-generation vector for genetic engineering. The most common methods for developing AC constructs are to clone and combine centromeric DNA and telomeric DNA fragments into a single large DNA construct. The AC constructs developed from such methods will contain ...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-7-10

    authors: Lin L,Koo DH,Zhang W,St Peter J,Jiang J

    更新日期:2011-04-15 00:00:00

  • High-throughput quantification of more than 100 primary- and secondary-metabolites, and phytohormones by a single solid-phase extraction based sample preparation with analysis by UHPLC-HESI-MS/MS.

    abstract:BACKGROUND:Plant metabolites are commonly functionally classified, as defense- or growth-related phytohormones, primary and specialized metabolites, and so forth. Analytical procedures for the quantifications of these metabolites are challenging because the metabolites can vary over several orders of magnitude in conce...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-016-0130-x

    authors: Schäfer M,Brütting C,Baldwin IT,Kallenbach M

    更新日期:2016-05-26 00:00:00

  • Protocol: Streamlined sub-protocols for floral-dip transformation and selection of transformants in Arabidopsis thaliana.

    abstract:: Generating and identifying transformants is essential for many studies of gene function. In Arabidopsis thaliana, a revolutionary protocol termed floral dip is now the most widely used transformation method. Although robust, it involves a number of relatively time-consuming and laborious steps, including manipulating...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-5-3

    authors: Davis AM,Hall A,Millar AJ,Darrah C,Davis SJ

    更新日期:2009-02-27 00:00:00

  • Genome-wide identification of microsatellites in white clover (Trifolium repens L.) using FIASCO and phpSSRMiner.

    abstract:BACKGROUND:Allotetraploid white clover (Trifolium repens L.) is an important forage legume widely cultivated in most temperate regions. Only a small number of microsatellite markers are publicly available and can be utilized in white clover breeding programs. The objectives of this study were to develop an integrated a...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-4-19

    authors: Zhang Y,He J,Zhao PX,Bouton JH,Monteros MJ

    更新日期:2008-07-16 00:00:00

  • Microscopy of Physcomitrella patens sperm cells.

    abstract:BACKGROUND:Archegoniates (bryophytes, ferns and gymnosperms), such as the moss Physcomitrella patens, possess freely motile sperm cells (spermatozoids) which reach the egg cell via surface water. Although these motile flagellated sperm cells are a traditional botanical subject, they have not been thoroughly analysed in...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-017-0186-2

    authors: Horst NA,Reski R

    更新日期:2017-05-10 00:00:00

  • Developing transgenic wheat to encounter rusts and powdery mildew by overexpressing barley chi26 gene for fungal resistance.

    abstract:BACKGROUND:The main aim of this study was to improve fungal resistance in bread wheat via transgenesis. Transgenic wheat plants harboring barley chitinase (chi26) gene, driven by maize ubi promoter, were obtained using biolistic bombardment, whereas the herbicide resistance gene, bar, driven by the CaMV 35S promoter wa...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-017-0191-5

    authors: Eissa HF,Hassanien SE,Ramadan AM,El-Shamy MM,Saleh OM,Shokry AM,Abdelsattar M,Morsy YB,El-Maghraby MA,Alameldin HF,Hassan SM,Osman GH,Mahfouz HT,Gad El-Karim GA,Madkour MA,Bahieldin A

    更新日期:2017-05-22 00:00:00

  • A sterile hydroponic system for characterising root exudates from specific root types and whole-root systems of large crop plants.

    abstract:Background:Plant roots release a variety of organic compounds into the soil which alter the physical, chemical and biological properties of the rhizosphere. Root exudates are technically challenging to measure in soil because roots are difficult to access and exudates can be bound by minerals or consumed by microorgani...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-018-0380-x

    authors: Kawasaki A,Okada S,Zhang C,Delhaize E,Mathesius U,Richardson AE,Watt M,Gilliham M,Ryan PR

    更新日期:2018-12-20 00:00:00

  • Striga parasitizes transgenic hairy roots of Zea mays and provides a tool for studying plant-plant interactions.

    abstract:BACKGROUND:Striga species are noxious root hemi-parasitic weeds that debilitate cereal production in sub-Saharan Africa (SSA). Control options for Striga are limited and developing Striga resistant crop germplasm is regarded as the best and most sustainable control measure. Efforts to improve germplasm for Striga resis...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-8-20

    authors: Runo S,Macharia S,Alakonya A,Machuka J,Sinha N,Scholes J

    更新日期:2012-06-21 00:00:00

  • Fast virtual histology using X-ray in-line phase tomography: application to the 3D anatomy of maize developing seeds.

    abstract:BACKGROUND:Despite increasing demand, imaging the internal structure of plant organs or tissues without the use of transgenic lines expressing fluorescent proteins remains a challenge. Techniques such as magnetic resonance imaging, optical projection tomography or X-ray absorption tomography have been used with various...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-015-0098-y

    authors: Rousseau D,Widiez T,Di Tommaso S,Rositi H,Adrien J,Maire E,Langer M,Olivier C,Peyrin F,Rogowsky P

    更新日期:2015-12-18 00:00:00

  • A rapid phenotyping method for adult plant resistance to leaf rust in wheat.

    abstract:BACKGROUND:Leaf rust (LR), caused by Puccinia triticina and is an important disease of wheat (Triticum aestivum L.). The most sustainable method for controlling rust diseases is deployment of cultivars incorporating adult plant resistance (APR). However, phenotyping breeding populations or germplasm collections for res...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-016-0117-7

    authors: Riaz A,Periyannan S,Aitken E,Hickey L

    更新日期:2016-03-02 00:00:00

  • A new approach to varietal identification in plants by microsatellite high resolution melting analysis: application to the verification of grapevine and olive cultivars.

    abstract:BACKGROUND:Microsatellites are popular molecular markers in many plant species due to their stable and highly polymorphic nature. A number of analysis methods have been described but analyses of these markers are typically performed on cumbersome polyacrylamide gels or more conveniently by capillary electrophoresis on ...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-4-8

    authors: Mackay JF,Wright CD,Bonfiglioli RG

    更新日期:2008-05-19 00:00:00

  • Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants.

    abstract::Primer design is a critical step in the application of PCR-based technologies in gene expression and genetic diversity analysis. As more plant genomes have been sequenced in recent years, the emphasis of primer design strategy has shifted to genome-wide and high-throughput direction. This paper summarizes recent advan...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-2-4

    authors: Yang X,Scheffler BE,Weston LA

    更新日期:2006-03-01 00:00:00

  • Isolation of dimorphic chloroplasts from the single-cell C4 species Bienertia sinuspersici.

    abstract:: Three terrestrial plants are known to perform C4 photosynthesis without the dual-cell system by partitioning two distinct types of chloroplasts in separate cytoplasmic compartments. We report herein a protocol for isolating the dimorphic chloroplasts from Bienertia sinuspersici. Hypo-osmotically lysed protoplasts und...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-8-8

    authors: Lung SC,Yanagisawa M,Chuong SD

    更新日期:2012-03-06 00:00:00

  • Assessing plant performance in the Enviratron.

    abstract:Background:Assessing the impact of the environment on plant performance requires growing plants under controlled environmental conditions. Plant phenotypes are a product of genotype × environment (G × E), and the Enviratron at Iowa State University is a facility for testing under controlled conditions the effects of th...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0504-y

    authors: Bao Y,Zarecor S,Shah D,Tuel T,Campbell DA,Chapman AVE,Imberti D,Kiekhaefer D,Imberti H,Lübberstedt T,Yin Y,Nettleton D,Lawrence-Dill CJ,Whitham SA,Tang L,Howell SH

    更新日期:2019-10-23 00:00:00

  • Molecular identification of a root apical cell-specific and stress-responsive enhancer from an Arabidopsis enhancer trap line.

    abstract:Background:Plant root apex is the major part to direct the root growth and development by responding to various signals/cues from internal and soil environments. To study and understand root system biology particularly at a molecular and cellular level, an Arabidopsis T-DNA insertional enhancer trap line J3411 expressi...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0393-0

    authors: Zhang L,Qin LN,Zeng ZR,Wu CZ,Gong YY,Liu LH,Cao FQ

    更新日期:2019-01-31 00:00:00

  • Rapid diagnosis of nitrogen status in rice based on Fourier transform infrared photoacoustic spectroscopy (FTIR-PAS).

    abstract:Background:An effective and expeditious approach to assess plant nitrogen status is urgently needed in rice production and management as the conventional chemical methods are laborious and time-consuming. Results:Fourier transform infrared photoacoustic spectroscopy (FTIR-PAS) was used to record the spectra of rice le...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0482-0

    authors: Wu K,Du C,Ma F,Shen Y,Liang D,Zhou J

    更新日期:2019-08-19 00:00:00

  • Adaptive minirhizotron for pepper roots observation and its installation based on root system architecture traits.

    abstract:Background:Root is the principal part of plants to absorb water and nutrient, anchor the plant and affect yield and quality. Non-destructive detection of root traits is difficult to perform due to the hidden nature of the root. Therefore, improved methods to measure roots are necessary to support plant breeding, and op...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0414-z

    authors: Lu W,Wang X,Wang F

    更新日期:2019-03-23 00:00:00

  • FRET-SLiM on native autofluorescence: a fast and reliable method to study interactions between fluorescent probes and lignin in plant cell wall.

    abstract:Background:Lignocellulosic biomass is a complex network of polymers making the cell walls of plants. It represents a feedstock of sustainable resources to be converted into fuels, chemicals and materials. Because of its complex architecture, lignocellulose is a recalcitrant material that necessitates some pretreatments...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-018-0342-3

    authors: Terryn C,Paës G,Spriet C

    更新日期:2018-08-27 00:00:00

  • DiNAR: revealing hidden patterns of plant signalling dynamics using Differential Network Analysis in R.

    abstract:Background:Progress in high-throughput molecular methods accompanied by more complex experimental designs demands novel data visualisation solutions. To specifically answer the question which parts of the specifical biological system are responding in particular perturbation, integrative approach in which experimental ...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-018-0345-0

    authors: Zagorščak M,Blejec A,Ramšak Ž,Petek M,Stare T,Gruden K

    更新日期:2018-08-30 00:00:00

  • Methodology: an optimized, high-yield tomato leaf chloroplast isolation and stroma extraction protocol for proteomics analyses and identification of chloroplast co-localizing proteins.

    abstract:Background:Chloroplasts are critical organelles that perceive and convey metabolic and stress signals to different cellular components, while remaining the seat of photosynthesis and a metabolic factory. The proteomes of intact leaves, chloroplasts, and suborganellar fractions of plastids have been evaluated in the mod...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-020-00667-5

    authors: Bhattacharya O,Ortiz I,Walling LL

    更新日期:2020-09-24 00:00:00

  • Methanol fixation of plant tissue for Scanning Electron Microscopy improves preservation of tissue morphology and dimensions.

    abstract:BACKGROUND:It is well known that preparation of biological (plant and animal) tissues for Scanning Electron Microscopy (SEM) by chemical fixation and critical point drying results in shrinkage of tissues, often by up to 20-30%, depending on the tissue type and fixation protocol used. We sought to identify a protocol th...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-9-36

    authors: Talbot MJ,White RG

    更新日期:2013-10-02 00:00:00