Barley callus: a model system for bioengineering of starch in cereals.

Abstract:

BACKGROUND:Starch is the most important source of calories for human nutrition and the majority of it is produced by cereal farming. Starch is also used as a renewable raw material in a range of industrial sectors. It can be chemically modified to introduce new physicochemical properties. In this way starch is adapted to a variety of specific end-uses. Recombinant DNA technologies offers an alternative to starch industrial processing. The plant biosynthetic pathway can be manipulated to design starches with novel structure and improved technological properties. In the future this may reduce or eliminate the economical and environmental costs of industrial modification. Recently, many advances have been achieved to clarify the genetic mechanism that controls starch biosynthesis. Several genes involved in the synthesis and modification of complex carbohydrates in many organisms have been identified and cloned. This knowledge suggests a number of strategies and a series of candidate genes for genetic transformation of crops to generate new types of starch-based polymers. However transformation of cereals is a slow process and there is no easy model system available to test the efficiency of candidate genes in planta. RESULTS:We explored the possibility to use transgenic barley callus generated from immature embryo for a fast test of transgenic modification strategies of starch biosynthesis. We found that this callus contains 4% (w/w dw) starch granules, which we could modify by generating fully transgenic calli by Agrobacterium-transformation. A Green Fluorescent Protein reporter protein tag was used to identify and propagate only fully transgenic callus explants. Around 1 - 1.5 g dry weight of fully transgenic callus could be produced in 9 weeks. Callus starch granules were smaller than endosperm starch granules and contained less amylose. Similarly the expression profile of starch biosynthesis genes were slightly different in callus compared with developing endosperm. CONCLUSIONS:In this study we have developed an easy and rapid in planta model system for starch bioengineering in cereals. We suggest that this method can be used as a time-efficient model system for fast screening of candidate genes for the generation of modified starch or new types of carbohydrate polymers.

journal_name

Plant Methods

journal_title

Plant methods

authors

Carciofi M,Blennow A,Nielsen MM,Holm PB,Hebelstrup KH

doi

10.1186/1746-4811-8-36

subject

Has Abstract

pub_date

2012-09-07 00:00:00

pages

36

issue

1

issn

1746-4811

pii

1746-4811-8-36

journal_volume

8

pub_type

杂志文章
  • Isolation of dimorphic chloroplasts from the single-cell C4 species Bienertia sinuspersici.

    abstract:: Three terrestrial plants are known to perform C4 photosynthesis without the dual-cell system by partitioning two distinct types of chloroplasts in separate cytoplasmic compartments. We report herein a protocol for isolating the dimorphic chloroplasts from Bienertia sinuspersici. Hypo-osmotically lysed protoplasts und...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-8-8

    authors: Lung SC,Yanagisawa M,Chuong SD

    更新日期:2012-03-06 00:00:00

  • Evaluation of quinclorac toxicity and alleviation by salicylic acid in rice seedlings using ground-based visible/near-infrared hyperspectral imaging.

    abstract:Background:To investigate potential effects of herbicide phytotoxic on crops, a major challenge is a lack of non-destructive and rapid methods to detect plant growth that could allow characterization of herbicide-resistant plants. In such a case, hyperspectral imaging can quickly obtain the spectrum for each pixel in t...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-020-00576-7

    authors: Wang J,Zhang C,Shi Y,Long M,Islam F,Yang C,Yang S,He Y,Zhou W

    更新日期:2020-03-05 00:00:00

  • An in vitro protocol for rapidly assessing the effects of antimicrobial compounds on the unculturable bacterial plant pathogen, Candidatus Liberibacter asiaticus.

    abstract:Background:Most bacteria are not culturable, but can be identified through molecular methods such as metagenomics studies. Due to specific metabolic requirements and symbiotic relationships, these bacteria cannot survive on typical laboratory media. Many economically and medically important bacteria are unculturable; i...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0465-1

    authors: Krystel J,Shi Q,Shaw J,Gupta G,Hall D,Stover E

    更新日期:2019-07-31 00:00:00

  • Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites.

    abstract:BACKGROUND:Protein phosphorylation is accepted as a major regulatory pathway in plants. More than 1000 protein kinases are predicted in the Arabidopsis proteome, however, only a few studies look systematically for in vivo protein phosphorylation sites. Owing to the low stoichiometry and low abundance of phosphorylated ...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-1-9

    authors: Wolschin F,Weckwerth W

    更新日期:2005-11-01 00:00:00

  • High-throughput quantification of more than 100 primary- and secondary-metabolites, and phytohormones by a single solid-phase extraction based sample preparation with analysis by UHPLC-HESI-MS/MS.

    abstract:BACKGROUND:Plant metabolites are commonly functionally classified, as defense- or growth-related phytohormones, primary and specialized metabolites, and so forth. Analytical procedures for the quantifications of these metabolites are challenging because the metabolites can vary over several orders of magnitude in conce...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-016-0130-x

    authors: Schäfer M,Brütting C,Baldwin IT,Kallenbach M

    更新日期:2016-05-26 00:00:00

  • Rapid, high efficiency virus-mediated mutant complementation and gene silencing in Antirrhinum.

    abstract:Background:Antirrhinum (snapdragon) species are models for genetic and evolutionary research but recalcitrant to genetic transformation, limiting use of transgenic methods for functional genomics. Transient gene expression from viral vectors and virus-induced gene silencing (VIGS) offer transformation-free alternatives...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-020-00683-5

    authors: Tan Y,Bukys A,Molnár A,Hudson A

    更新日期:2020-10-27 00:00:00

  • Isolation of antimicrobial peptides from different plant sources: Does a general extraction method exist?

    abstract::Plants are good sources of biologically active compounds with antimicrobial activity, including polypeptides. Antimicrobial peptides (AMPs) represent one of the main barriers of plant innate immunity to environmental stress factors and are attracting much research interest. There are some extraction methods for isolat...

    journal_title:Plant methods

    pub_type: 杂志文章,评审

    doi:10.1186/s13007-020-00687-1

    authors: Barashkova AS,Rogozhin EA

    更新日期:2020-10-23 00:00:00

  • Serial ChIP as a tool to investigate the co-localization or exclusion of proteins on plant genes.

    abstract:BACKGROUND:Establishing transcriptional regulatory networks that include protein-protein and protein-DNA interactions has become a key component to better understanding many fundamental biological processes. Although a variety of techniques are available to expose protein-protein and protein-DNA interactions, unequivoc...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-4-25

    authors: Xie Z,Grotewold E

    更新日期:2008-10-27 00:00:00

  • Methanol fixation of plant tissue for Scanning Electron Microscopy improves preservation of tissue morphology and dimensions.

    abstract:BACKGROUND:It is well known that preparation of biological (plant and animal) tissues for Scanning Electron Microscopy (SEM) by chemical fixation and critical point drying results in shrinkage of tissues, often by up to 20-30%, depending on the tissue type and fixation protocol used. We sought to identify a protocol th...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-9-36

    authors: Talbot MJ,White RG

    更新日期:2013-10-02 00:00:00

  • A new method for functional analysis of plastid EMBRYO-DEFECTIVE PPR genes by efficiently constructing cosuppression lines in Arabidopsis.

    abstract:BACKGROUND:Pentatricopeptide-repeat proteins (PPRs) characterized by tandem arrays of a degenerate 35-amino-acid repeat (PPR motif) can bind a single strand RNA and regulate organelle gene expression at the post-transcriptional level, including RNA cleavage, splicing, editing and stability etc. PPRs are conserved in al...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-020-00696-0

    authors: Chen J,Zhu H,Huang J,Huang W

    更新日期:2020-11-18 00:00:00

  • Methodology: an optimized, high-yield tomato leaf chloroplast isolation and stroma extraction protocol for proteomics analyses and identification of chloroplast co-localizing proteins.

    abstract:Background:Chloroplasts are critical organelles that perceive and convey metabolic and stress signals to different cellular components, while remaining the seat of photosynthesis and a metabolic factory. The proteomes of intact leaves, chloroplasts, and suborganellar fractions of plastids have been evaluated in the mod...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-020-00667-5

    authors: Bhattacharya O,Ortiz I,Walling LL

    更新日期:2020-09-24 00:00:00

  • Suitable transfection methods for single particle tracing in plant suspension cells.

    abstract:BACKGROUND:A multitude of different imaging systems are already available to image genetically altered RNA species; however, only a few of these techniques are actually suitable to visualize endogenous RNA. One possibility is to use fluorescently-labelled and hybridization-sensitive probes. In order to yield more infor...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-10-15

    authors: Göhring J,Fulcher N,Schilcher K,Barta A,Jacak J

    更新日期:2014-05-31 00:00:00

  • Quantifying spatial heterogeneity of chlorophyll fluorescence during plant growth and in response to water stress.

    abstract:BACKGROUND:Effects of abiotic and biotic stresses on plant photosynthetic performance lead to fitness and yield decrease. The maximum quantum efficiency of photosystem II (F v/F m) is a parameter of chlorophyll fluorescence (ChlF) classically used to track changes in photosynthetic performance. Despite recent technical...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-015-0067-5

    authors: Bresson J,Vasseur F,Dauzat M,Koch G,Granier C,Vile D

    更新日期:2015-03-26 00:00:00

  • A new image-based tool for the high throughput phenotyping of pollen viability: evaluation of inter- and intra-cultivar diversity in grapevine.

    abstract:Background:Low pollen viability may limit grapevine yield under certain conditions, causing relevant economic losses to grape-growers. It is usually evaluated by the quantification of the number of viable and non-viable pollen grains that are present in a sample after an adequate pollen grain staining procedure. Althou...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-017-0267-2

    authors: Tello J,Montemayor MI,Forneck A,Ibáñez J

    更新日期:2018-01-09 00:00:00

  • Infiltration-RNAseq: transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants.

    abstract:BACKGROUND:Transcription factors (TFs) coordinate precise gene expression patterns that give rise to distinct phenotypic outputs. The identification of genes and transcriptional networks regulated by a TF often requires stable transformation and expression changes in plant cells. However, the production of stable trans...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-016-0141-7

    authors: Bond DM,Albert NW,Lee RH,Gillard GB,Brown CM,Hellens RP,Macknight RC

    更新日期:2016-10-19 00:00:00

  • Real-time, non-destructive and in-field foliage yield and growth rate measurement in perennial ryegrass (Lolium perenne L.).

    abstract:Background:In-field measurement of yield and growth rate in pasture species is imprecise and costly, limiting scientific and commercial application. Our study proposed a LiDAR-based mobile platform for non-invasive vegetative biomass and growth rate estimation in perennial ryegrass (Lolium perenne L.). This included de...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0456-2

    authors: Ghamkhar K,Irie K,Hagedorn M,Hsiao J,Fourie J,Gebbie S,Hoyos-Villegas V,George R,Stewart A,Inch C,Werner A,Barrett B

    更新日期:2019-07-10 00:00:00

  • Blue-native PAGE in plants: a tool in analysis of protein-protein interactions.

    abstract::Intact protein complexes can be separated by apparent molecular mass using a standard polyacrylamide gel electrophoresis system combining mild detergents and the dye Coomassie Blue. Referring to the blue coloured gel and the gentle method of solubilization yielding native and enzymatically active protein complexes, th...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-1-11

    authors: Eubel H,Braun HP,Millar AH

    更新日期:2005-11-16 00:00:00

  • An improved procedure for isolation of high-quality RNA from nematode-infected Arabidopsis roots through laser capture microdissection.

    abstract:BACKGROUND:Cyst nematodes are biotrophs that form specialized feeding structures in the roots of host plants, which consist of a syncytial fusion of hypertrophied cells. The formation of syncytium is accompanied by profound transcriptional changes and active metabolism in infected tissues. The challenge in gene express...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-016-0123-9

    authors: Anjam MS,Ludwig Y,Hochholdinger F,Miyaura C,Inada M,Siddique S,Grundler FM

    更新日期:2016-04-26 00:00:00

  • Hyperspectral band selection using genetic algorithm and support vector machines for early identification of charcoal rot disease in soybean stems.

    abstract:Background:Charcoal rot is a fungal disease that thrives in warm dry conditions and affects the yield of soybeans and other important agronomic crops worldwide. There is a need for robust, automatic and consistent early detection and quantification of disease symptoms which are important in breeding programs for the de...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-018-0349-9

    authors: Nagasubramanian K,Jones S,Sarkar S,Singh AK,Singh A,Ganapathysubramanian B

    更新日期:2018-10-03 00:00:00

  • Integrating field-based heat tents and cyber-physical system technology to phenotype high night-time temperature impact on winter wheat.

    abstract:Background:Many agronomic traits have been bred into modern wheat varieties, but wheat (Triticum aestivum L.) continues to be vulnerable to heat stress, with high night-time temperature (HNT) stress shown to have large negative impact on yield and quality. Global mean temperature during the day is consistently warming ...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0424-x

    authors: Hein NT,Wagner D,Bheemanahalli R,Šebela D,Bustamante C,Chiluwal A,Neilsen ML,Jagadish SVK

    更新日期:2019-04-24 00:00:00

  • A light in the shadow: the use of Lucifer Yellow technique to demonstrate nectar reabsorption.

    abstract:BACKGROUND:Nectar reabsorption is a widely known phenomenon, related to the strategy of resource-recovery and also to maintain the nectar homeostasis at the nectary. The method currently performed to demonstrate nectar being reabsorbed involves the use of radioactive tracers applied to the nectary. Although this method...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-9-20

    authors: Cardoso-Gustavson P,Robazzi Bignelli Valente Aguiar JM,Ricardo Pansarin E,de Barros F

    更新日期:2013-06-19 00:00:00

  • Kinome profiling of Arabidopsis using arrays of kinase consensus substrates.

    abstract:BACKGROUND:Kinome profiling aims at the parallel analysis of kinase activities in a cell. Novel developed arrays containing consensus substrates for kinases are used to assess those kinase activities. The arrays described in this paper were already used to determine kinase activities in mammalian systems, but since sub...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-3-3

    authors: Ritsema T,Joore J,van Workum W,Pieterse CM

    更新日期:2007-02-12 00:00:00

  • Protocol: methodology for chromatin immunoprecipitation (ChIP) in Chlamydomonas reinhardtii.

    abstract:: We report on a detailed chromatin immunoprecipitation (ChIP) protocol for the unicellular green alga Chlamydomonas reinhardtii. The protocol is suitable for the analysis of nucleosome occupancy, histone modifications and transcription factor binding sites at the level of mononucleosomes for targeted and genome-wide s...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-7-35

    authors: Strenkert D,Schmollinger S,Schroda M

    更新日期:2011-11-03 00:00:00

  • Use of the non-radioactive SUnSET method to detect decreased protein synthesis in proteasome inhibited Arabidopsis roots.

    abstract:BACKGROUND:In eukaryotic cells, the proteasome maintains homeostasis by selectively degrading regulatory and misfolded proteins, and in doing so contributes to the amino acid pool. Inhibition of the proteasome in yeast and human cells decreases de novo protein synthesis. However, it is not know if proteasome inhibition...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-016-0120-z

    authors: Van Hoewyk D

    更新日期:2016-03-16 00:00:00

  • A simplified method to isolate rice mitochondria.

    abstract:BACKGROUND:Mitochondria play critical roles in plant growth, development and stress tolerance. Numerous researchers have carried out studies on the plant mitochondrial genome structure, mitochondrial metabolism and nuclear-cytoplasmic interactions. However, classical plant mitochondria extraction methods are time-consu...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-020-00690-6

    authors: Xu Y,Li X,Huang J,Peng L,Luo D,Zhang Q,Dan Z,Xiao H,Yang F,Hu J

    更新日期:2020-11-04 00:00:00

  • Function and anatomy of plant siRNA pools derived from hairpin transgenes.

    abstract:BACKGROUND:RNA interference results in specific gene silencing by small-interfering RNAs (siRNAs). Synthetic siRNAs provide a powerful tool for manipulating gene expression but high cost suggests that novel siRNA production methods are desirable. Strong evolutionary conservation of siRNA structure suggested that siRNAs...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-3-13

    authors: Chau BL,Lee KA

    更新日期:2007-11-25 00:00:00

  • Striga parasitizes transgenic hairy roots of Zea mays and provides a tool for studying plant-plant interactions.

    abstract:BACKGROUND:Striga species are noxious root hemi-parasitic weeds that debilitate cereal production in sub-Saharan Africa (SSA). Control options for Striga are limited and developing Striga resistant crop germplasm is regarded as the best and most sustainable control measure. Efforts to improve germplasm for Striga resis...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-8-20

    authors: Runo S,Macharia S,Alakonya A,Machuka J,Sinha N,Scholes J

    更新日期:2012-06-21 00:00:00

  • Developing transgenic wheat to encounter rusts and powdery mildew by overexpressing barley chi26 gene for fungal resistance.

    abstract:BACKGROUND:The main aim of this study was to improve fungal resistance in bread wheat via transgenesis. Transgenic wheat plants harboring barley chitinase (chi26) gene, driven by maize ubi promoter, were obtained using biolistic bombardment, whereas the herbicide resistance gene, bar, driven by the CaMV 35S promoter wa...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-017-0191-5

    authors: Eissa HF,Hassanien SE,Ramadan AM,El-Shamy MM,Saleh OM,Shokry AM,Abdelsattar M,Morsy YB,El-Maghraby MA,Alameldin HF,Hassan SM,Osman GH,Mahfouz HT,Gad El-Karim GA,Madkour MA,Bahieldin A

    更新日期:2017-05-22 00:00:00

  • Development of an innovative and sustainable one-step method for rapid plant DNA isolation for targeted PCR using magnetic ionic liquids.

    abstract:Background:Nowadays, there is an increasing demand for fast and reliable plant biomolecular analyses. Conventional methods for the isolation of nucleic acids are time-consuming and require multiple and often non-automatable steps to remove cellular interferences, with consequence that sample preparation is the major bo...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0408-x

    authors: Marengo A,Cagliero C,Sgorbini B,Anderson JL,Emaus MN,Bicchi C,Bertea CM,Rubiolo P

    更新日期:2019-03-09 00:00:00

  • Recent achievements obtained by chloroplast transformation.

    abstract::Chloroplasts play a great role for sustained wellbeing of life on the planet. They have the power and raw materials that can be used as sophisticated biological factories. They are rich in energy as they have lots of pigment-protein complexes capable of collecting sunlight, in sugar produced by photosynthesis and in m...

    journal_title:Plant methods

    pub_type: 杂志文章,评审

    doi:10.1186/s13007-017-0179-1

    authors: Adem M,Beyene D,Feyissa T

    更新日期:2017-04-19 00:00:00