Abstract:
:Although kidney parenchymal tissue can be generated in vitro, reconstructing the complex vasculature of the kidney remains a daunting task. The molecular pathways that specify and sustain functional, phenotypic and structural heterogeneity of the kidney vasculature are unknown. Here, we employ high-throughput bulk and single-cell RNA sequencing of the non-lymphatic endothelial cells (ECs) of the kidney to identify the molecular pathways that dictate vascular zonation from embryos to adulthood. We show that the kidney manifests vascular-specific signatures expressing defined transcription factors, ion channels, solute transporters, and angiocrine factors choreographing kidney functions. Notably, the ontology of the glomerulus coincides with induction of unique transcription factors, including Tbx3, Gata5, Prdm1, and Pbx1. Deletion of Tbx3 in ECs results in glomerular hypoplasia, microaneurysms and regressed fenestrations leading to fibrosis in subsets of glomeruli. Deciphering the molecular determinants of kidney vascular signatures lays the foundation for rebuilding nephrons and uncovering the pathogenesis of kidney disorders.
journal_name
Nat Communjournal_title
Nature communicationsauthors
Barry DM,McMillan EA,Kunar B,Lis R,Zhang T,Lu T,Daniel E,Yokoyama M,Gomez-Salinero JM,Sureshbabu A,Cleaver O,Di Lorenzo A,Choi ME,Xiang J,Redmond D,Rabbany SY,Muthukumar T,Rafii Sdoi
10.1038/s41467-019-12872-5subject
Has Abstractpub_date
2019-12-13 00:00:00pages
5705issue
1issn
2041-1723pii
10.1038/s41467-019-12872-5journal_volume
10pub_type
杂志文章abstract:: ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-06969-6
更新日期:2018-10-24 00:00:00
abstract::Novel methods for information processing are highly desired in our information-driven society. Inspired by the brain's ability to process information, the recently introduced paradigm known as 'reservoir computing' shows that complex networks can efficiently perform computation. Here we introduce a novel architecture ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms1476
更新日期:2011-09-13 00:00:00
abstract::Fatty acids (FAs) are essential nutrients, but how they are transported into cells remains unclear. Here, we show that FAs trigger caveolae-dependent CD36 internalization, which in turn delivers FAs into adipocytes. During the process, binding of FAs to CD36 activates its downstream kinase LYN, which phosphorylates DH...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-18565-8
更新日期:2020-09-21 00:00:00
abstract::Cascade reactions initiated by radical addition to alkynes are synthetically very attractive because they enable access to highly complex molecular skeletons in only few synthetic steps under usually mild conditions. Here we report a general radical cascade reaction of alkynes, N-fluoroarylsulfonimides and alcohols, e...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms8011
更新日期:2015-04-22 00:00:00
abstract::Molecular photoswitches provide an extremely simple solution for solar energy conversion and storage. To convert stored energy to electricity, however, the photoswitch has to be coupled to a semiconducting electrode. In this work, we report on the assembly of an operational solar-energy-storing organic-oxide hybrid in...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-10263-4
更新日期:2019-06-03 00:00:00
abstract::The efficient selection and isolation of individual cells of interest from a mixed population is desired in many biomedical and clinical applications. Here we show the concept of using photoswitchable semiconducting polymer dots (Pdots) as an optical 'painting' tool, which enables the selection of certain adherent cel...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms11468
更新日期:2016-04-27 00:00:00
abstract::The original version of this Article was missing the ORCID ID of Professor Nicola Pugno.Also in the original version of this Article, the third to last sentence of the fourth paragraph of the Results incorrectly read 'However, the stepwise addition of CNTs increases the self-entanglement and thereby the compressive st...
journal_title:Nature communications
pub_type: 杂志文章,已发布勘误
doi:10.1038/s41467-017-02372-9
更新日期:2018-01-09 00:00:00
abstract::Necroptosis is a type of programmed cell death with great significance in many pathological processes. Tumour necrosis factor-α(TNF), a proinflammatory cytokine, is a prototypic trigger of necroptosis. It is known that mitochondrial reactive oxygen species (ROS) promote necroptosis, and that kinase activity of recepto...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms14329
更新日期:2017-02-08 00:00:00
abstract::Aqueous nanofibres constructed by the self-assembly of small amphiphilic molecules can become entangled to form hydrogels that have a variety of applications including tissue engineering, and controlled drug delivery. The hydrogels are formed through the random physical cross-linkings of flexible nanofibres. Here we r...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms1465
更新日期:2011-09-06 00:00:00
abstract::Mangrove forests hold some of the highest densities of carbon recorded in any ecosystem, but have experienced widespread deforestation through conversion to aquaculture and agriculture. Alongside deforestation, mangroves have shown simultaneous natural expansion in some parts of the world, and considerable investments...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-18118-z
更新日期:2020-08-26 00:00:00
abstract::Genome editing critically relies on selective recognition of target sites. However, despite recent progress, the underlying search mechanism of genome-editing proteins is not fully understood in the context of cellular chromatin environments. Here, we use single-molecule imaging in live cells to directly study the beh...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-20672-5
更新日期:2021-01-27 00:00:00
abstract::Conjugated polymeric molecules have been heralded as promising electrode materials for the next-generation energy-storage technologies owing to their chemical flexibility at the molecular level, environmental benefit, and cost advantage. However, before any practical implementation takes place, the low capacity, poor ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-02889-7
更新日期:2018-02-08 00:00:00
abstract::Black phosphorus, a fast emerging two-dimensional material, has been configured as field effect transistors, showing a hole-transport-dominated ambipolar characteristic. Here we report an effective modulation on ambipolar characteristics of few-layer black phosphorus transistors through in situ surface functionalizati...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms7485
更新日期:2015-03-12 00:00:00
abstract::The miR-200 family members have been implicated in stress responses and ovarian tumorigenesis. Here, we find that miR-200c/141 transcription is intimately linked to the transcription of the proximal upstream gene PTPN6 (SHP1) in all physiological conditions tested. PTPN6 and miR-200c/141 are transcriptionally co-regul...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms9959
更新日期:2016-01-04 00:00:00
abstract::The HIV Tat protein competes with the 7SK:HEXIM interaction to hijack pTEFb from 7SK snRNP and recruit it to the TAR motif on stalled viral transcripts. Here we solve structures of 7SK stemloop-1 and TAR in complex with Tat's RNA binding domain (RBD) to gain insights into this process. We find that 7SK is peppered wit...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-06591-6
更新日期:2018-10-15 00:00:00
abstract::The T helper 9 (Th9) cell transcriptional network is formed by an equilibrium of signals induced by cytokines and antigen presentation. Here we show that, within this network, two interferon regulatory factors (IRF), IRF1 and IRF4, display opposing effects on Th9 differentiation. IRF4 dose-dependently promotes, wherea...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms15366
更新日期:2017-05-12 00:00:00
abstract::Digital polymers with precisely ordered units acting as the coded 0- or 1-bit, are introduced as a promising option for molecular data storage. However, the pursuit of better performance in terms of high storage capacity and useful functions never stops. Herein, we propose a concept of an information-coded 2D digital ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-09957-6
更新日期:2019-04-23 00:00:00
abstract::This corrects the article DOI: 10.1038/ncomms9754. ...
journal_title:Nature communications
pub_type: 杂志文章,已发布勘误
doi:10.1038/ncomms15229
更新日期:2017-08-08 00:00:00
abstract::TP53 mutations are the most frequent genetic alterations in breast cancer and are associated with more aggressive disease and worse overall survival. We have created two conditional mutant Trp53 alleles in the mouse that allow expression of Trp53R172H or Trp53R245W missense mutations in single cells surrounded by a no...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-06146-9
更新日期:2018-09-27 00:00:00
abstract::Knowing which proteins and RNAs directly interact is essential for understanding cellular mechanisms. Unfortunately, discovering such interactions is costly and often unreliable. To overcome these limitations, we developed rec-YnH, a new yeast two and three-hybrid-based screening pipeline capable of detecting interact...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-06128-x
更新日期:2018-09-14 00:00:00
abstract::Sodium-ion batteries are an alternative to lithium-ion batteries for large-scale applications. However, low capacity and poor rate capability of existing anodes are the main bottlenecks to future developments. Here we report a uniform coating of antimony sulphide (stibnite) on graphene, fabricated by a solution-based ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms3922
更新日期:2013-01-01 00:00:00
abstract::Protein scaffolds can provide a promising alternative to antibodies for various biomedical and biotechnological applications, including therapeutics. Here we describe the design and development of the Alphabody, a protein scaffold featuring a single-chain antiparallel triple-helix coiled-coil fold. We report affinity-...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms6237
更新日期:2014-10-30 00:00:00
abstract::A longstanding goal of synthetic biology has been the programmable control of cellular functions. Central to this is the creation of versatile regulatory toolsets that allow for programmable control of gene expression. Of the many regulatory molecules available, RNA regulators offer the intriguing possibility of de no...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-017-01082-6
更新日期:2017-10-19 00:00:00
abstract::Ultraweak light detectors have wide-ranging important applications such as astronomical observation, remote sensing, laser ranging, and night vision. Current commercial ultraweak light detectors are commonly based on a photomultiplier tube or an avalanche photodiode, and they are incompatible with microelectronic devi...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-09206-w
更新日期:2019-03-20 00:00:00
abstract::Noble metal nanoparticles stabilized by organic ligands are important for applications in assembly, site-specific bioconjugate labelling and sensing, drug delivery and medical therapy, molecular recognition and molecular electronics, and catalysis. Here we report crystal structures and theoretical analysis of three Ag...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms3422
更新日期:2013-01-01 00:00:00
abstract::One of the primary efforts in influenza vaccine strain recommendation is to monitor through gene sequencing the viral surface protein haemagglutinin (HA) variants that lead to viral antigenic changes. Here we have developed a computational method, denoted as PREDAC, to predict antigenic clusters of influenza A (H3N2) ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms1710
更新日期:2012-02-28 00:00:00
abstract::Long non-coding RNAs (lncRNAs) contribute to cardiac (patho)physiology. Aging is the major risk factor for cardiovascular disease with cardiomyocyte apoptosis as one underlying cause. Here, we report the identification of the aging-regulated lncRNA Sarrah (ENSMUST00000140003) that is anti-apoptotic in cardiomyocytes. ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-15995-2
更新日期:2020-04-27 00:00:00
abstract::Genetic screens are powerful tools to identify the genes required for a given biological process. However, for technical reasons, comprehensive screens have been restricted to very few model organisms. Therefore, although deep sequencing is revealing the genes of ever more insect species, the functional studies predom...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms8822
更新日期:2015-07-28 00:00:00
abstract::The nasal cellular epigenome may serve as biomarker of airway disease and environmental response. Here we collect nasal swabs from the anterior nares of 547 children (mean-age 12.9 y), and measure DNA methylation (DNAm) with the Infinium MethylationEPIC BeadChip. We perform nasal Epigenome-Wide Association analyses (E...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-11058-3
更新日期:2019-07-12 00:00:00
abstract::IL-17+ CD4+ T (Th17) cells contribute to the pathogenesis of several human inflammatory diseases. Here we demonstrate that TNF inhibitor (TNFi) drugs induce the anti-inflammatory cytokine IL-10 in CD4+ T cells including IL-17+ CD4+ T cells. TNFi-mediated induction of IL-10 in IL-17+ CD4+ T cells is Treg-/Foxp3-indepen...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms4199
更新日期:2014-01-01 00:00:00