Virus-borne mini-CRISPR arrays are involved in interviral conflicts.

Abstract:

:CRISPR-Cas immunity is at the forefront of antivirus defense in bacteria and archaea and specifically targets viruses carrying protospacers matching the spacers catalogued in the CRISPR arrays. Here, we perform deep sequencing of the CRISPRome-all spacers contained in a microbiome-associated with hyperthermophilic archaea of the order Sulfolobales recovered directly from an environmental sample and from enrichment cultures established in the laboratory. The 25 million CRISPR spacers sequenced from a single sampling site dwarf the diversity of spacers from all available Sulfolobales isolates and display complex temporal dynamics. Comparison of closely related virus strains shows that CRISPR targeting drives virus genome evolution. Furthermore, we show that some archaeal viruses carry mini-CRISPR arrays with 1-2 spacers and preceded by leader sequences but devoid of cas genes. Closely related viruses present in the same population carry spacers against each other. Targeting by these virus-borne spacers represents a distinct mechanism of heterotypic superinfection exclusion and appears to promote archaeal virus speciation.

journal_name

Nat Commun

journal_title

Nature communications

authors

Medvedeva S,Liu Y,Koonin EV,Severinov K,Prangishvili D,Krupovic M

doi

10.1038/s41467-019-13205-2

subject

Has Abstract

pub_date

2019-11-15 00:00:00

pages

5204

issue

1

issn

2041-1723

pii

10.1038/s41467-019-13205-2

journal_volume

10

pub_type

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