H3K9me2 orchestrates inheritance of spatial positioning of peripheral heterochromatin through mitosis.

Abstract:

:Cell-type-specific 3D organization of the genome is unrecognizable during mitosis. It remains unclear how essential positional information is transmitted through cell division such that a daughter cell recapitulates the spatial genome organization of the parent. Lamina-associated domains (LADs) are regions of repressive heterochromatin positioned at the nuclear periphery that vary by cell type and contribute to cell-specific gene expression and identity. Here we show that histone 3 lysine 9 dimethylation (H3K9me2) is an evolutionarily conserved, specific mark of nuclear peripheral heterochromatin and that it is retained through mitosis. During mitosis, phosphorylation of histone 3 serine 10 temporarily shields the H3K9me2 mark allowing for dissociation of chromatin from the nuclear lamina. Using high-resolution 3D immuno-oligoFISH, we demonstrate that H3K9me2-enriched genomic regions, which are positioned at the nuclear lamina in interphase cells prior to mitosis, re-associate with the forming nuclear lamina before mitotic exit. The H3K9me2 modification of peripheral heterochromatin ensures that positional information is safeguarded through cell division such that individual LADs are re-established at the nuclear periphery in daughter nuclei. Thus, H3K9me2 acts as a 3D architectural mitotic guidepost. Our data establish a mechanism for epigenetic memory and inheritance of spatial organization of the genome.

journal_name

Elife

journal_title

eLife

authors

Poleshko A,Smith CL,Nguyen SC,Sivaramakrishnan P,Wong KG,Murray JI,Lakadamyali M,Joyce EF,Jain R,Epstein JA

doi

10.7554/eLife.49278

subject

Has Abstract

pub_date

2019-10-01 00:00:00

issn

2050-084X

pii

49278

journal_volume

8

pub_type

杂志文章

相关文献

eLife文献大全
  • GnT1IP-L specifically inhibits MGAT1 in the Golgi via its luminal domain.

    abstract::Mouse GnT1IP-L, and membrane-bound GnT1IP-S (MGAT4D) expressed in cultured cells inhibit MGAT1, the N-acetylglucosaminyltransferase that initiates the synthesis of hybrid and complex N-glycans. However, it is not known where in the secretory pathway GnT1IP-L inhibits MGAT1, nor whether GnT1IP-L inhibits other N-glycan...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.08916

    authors: Huang HH,Hassinen A,Sundaram S,Spiess AN,Kellokumpu S,Stanley P

    更新日期:2015-09-15 00:00:00

  • Cell non-autonomous regulation of health and longevity.

    abstract::As the demographics of the modern world skew older, understanding and mitigating the effects of aging is increasingly important within biomedical research. Recent studies in model organisms demonstrate that the aging process is frequently modified by an organism's ability to perceive and respond to changes in its envi...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.62659

    authors: Miller HA,Dean ES,Pletcher SD,Leiser SF

    更新日期:2020-12-10 00:00:00

  • Calmodulin-controlled spatial decoding of oscillatory Ca2+ signals by calcineurin.

    abstract::Calcineurin is responsible for mediating a wide variety of cellular processes in response to dynamic calcium (Ca(2+)) signals, yet the precise mechanisms involved in the spatiotemporal control of calcineurin signaling are poorly understood. Here, we use genetically encoded fluorescent biosensors to directly probe the ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.03765

    authors: Mehta S,Aye-Han NN,Ganesan A,Oldach L,Gorshkov K,Zhang J

    更新日期:2014-07-23 00:00:00

  • Knockout of Slo2.2 enhances itch, abolishes KNa current, and increases action potential firing frequency in DRG neurons.

    abstract::Two mammalian genes, Kcnt1 and Kcnt2, encode pore-forming subunits of Na(+)-dependent K(+) (KNa) channels. Progress in understanding KNa channels has been hampered by the absence of specific tools and methods for rigorous KNa identification in native cells. Here, we report the genetic disruption of both Kcnt1 and Kcnt...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.10013

    authors: Martinez-Espinosa PL,Wu J,Yang C,Gonzalez-Perez V,Zhou H,Liang H,Xia XM,Lingle CJ

    更新日期:2015-11-11 00:00:00

  • BRAF activates PAX3 to control muscle precursor cell migration during forelimb muscle development.

    abstract::Migration of skeletal muscle precursor cells is a key step during limb muscle development and depends on the activity of PAX3 and MET. Here, we demonstrate that BRAF serves a crucial function in formation of limb skeletal muscles during mouse embryogenesis downstream of MET and acts as a potent inducer of myoblast cel...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.18351

    authors: Shin J,Watanabe S,Hoelper S,Krüger M,Kostin S,Pöling J,Kubin T,Braun T

    更新日期:2016-12-01 00:00:00

  • Clearance of beta-amyloid is facilitated by apolipoprotein E and circulating high-density lipoproteins in bioengineered human vessels.

    abstract::Amyloid plaques, consisting of deposited beta-amyloid (Aβ), are a neuropathological hallmark of Alzheimer's Disease (AD). Cerebral vessels play a major role in AD, as Aβ is cleared from the brain by pathways involving the cerebrovasculature, most AD patients have cerebrovascular amyloid (cerebral amyloid angiopathy (C...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.29595

    authors: Robert J,Button EB,Yuen B,Gilmour M,Kang K,Bahrabadi A,Stukas S,Zhao W,Kulic I,Wellington CL

    更新日期:2017-10-10 00:00:00

  • Mechanical inhibition of isolated Vo from V/A-ATPase for proton conductance.

    abstract::V-ATPase is an energy converting enzyme, coupling ATP hydrolysis/synthesis in the hydrophilic V1 domain, with proton flow through the Vo membrane domain, via rotation of the central rotor complex relative to the surrounding stator apparatus. Upon dissociation from the V1 domain, the Vo domain of the eukaryotic V-ATPas...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.56862

    authors: Kishikawa JI,Nakanishi A,Furuta A,Kato T,Namba K,Tamakoshi M,Mitsuoka K,Yokoyama K

    更新日期:2020-07-08 00:00:00

  • Doa10 is a membrane protein retrotranslocase in ER-associated protein degradation.

    abstract::In endoplasmic reticulum-associated protein degradation (ERAD), membrane proteins are ubiquitinated, extracted from the membrane, and degraded by the proteasome. The cytosolic ATPase Cdc48 drives extraction by pulling on polyubiquitinated substrates. How hydrophobic transmembrane (TM) segments are moved from the phosp...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.56945

    authors: Schmidt CC,Vasic V,Stein A

    更新日期:2020-06-26 00:00:00

  • Sliding to the rescue of damaged DNA.

    abstract::Single-molecule imaging experiments have shed new light on the methods used by the enzyme RecA to align single- and double-stranded DNA so that double-strand breaks can be repaired. ...

    journal_title:eLife

    pub_type: 评论,杂志文章

    doi:10.7554/eLife.00347

    authors: Gibb B,Greene EC

    更新日期:2012-12-13 00:00:00

  • A mitochondria-anchored isoform of the actin-nucleating spire protein regulates mitochondrial division.

    abstract::Mitochondrial division, essential for survival in mammals, is enhanced by an inter-organellar process involving ER tubules encircling and constricting mitochondria. The force for constriction is thought to involve actin polymerization by the ER-anchored isoform of the formin protein inverted formin 2 (INF2). Unknown i...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.08828

    authors: Manor U,Bartholomew S,Golani G,Christenson E,Kozlov M,Higgs H,Spudich J,Lippincott-Schwartz J

    更新日期:2015-08-25 00:00:00

  • Deconstruction of the beaten Path-Sidestep interaction network provides insights into neuromuscular system development.

    abstract::An 'interactome' screen of all Drosophila cell-surface and secreted proteins containing immunoglobulin superfamily (IgSF) domains discovered a network formed by paralogs of Beaten Path (Beat) and Sidestep (Side), a ligand-receptor pair that is central to motor axon guidance. Here we describe a new method for interacto...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.28111

    authors: Li H,Watson A,Olechwier A,Anaya M,Sorooshyari SK,Harnett DP,Lee HP,Vielmetter J,Fares MA,Garcia KC,Özkan E,Labrador JP,Zinn K

    更新日期:2017-08-15 00:00:00

  • A bacterial Goldilocks mechanism.

    abstract::Bacillus subtilis can measure the activity of the enzymes that remodel the cell wall to ensure that the levels of activity are 'just right'. ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.54244

    authors: Kim IM,Szurmant H

    更新日期:2020-01-24 00:00:00

  • Anatomical organization of presubicular head-direction circuits.

    abstract::Neurons coding for head-direction are crucial for spatial navigation. Here we explored the cellular basis of head-direction coding in the rat dorsal presubiculum (PreS). We found that layer2 is composed of two principal cell populations (calbindin-positive and calbindin-negative neurons) which targeted the contralater...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.14592

    authors: Preston-Ferrer P,Coletta S,Frey M,Burgalossi A

    更新日期:2016-06-10 00:00:00

  • Long-term antigen exposure irreversibly modifies metabolic requirements for T cell function.

    abstract::Energy metabolism is essential for T cell function. However, how persistent antigenic stimulation affects T cell metabolism is unknown. Here, we report that long-term in vivo antigenic exposure induced a specific deficit in numerous metabolic enzymes. Accordingly, T cells exhibited low basal glycolytic flux and limite...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.30938

    authors: Bettonville M,d'Aria S,Weatherly K,Porporato PE,Zhang J,Bousbata S,Sonveaux P,Braun MY

    更新日期:2018-06-18 00:00:00

  • A resource for the Drosophila antennal lobe provided by the connectome of glomerulus VA1v.

    abstract::Using FIB-SEM we report the entire synaptic connectome of glomerulus VA1v of the right antennal lobe in Drosophila melanogaster. Within the glomerulus we densely reconstructed all neurons, including hitherto elusive local interneurons. The fruitless-positive, sexually dimorphic VA1v included >11,140 presynaptic sites ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.37550

    authors: Horne JA,Langille C,McLin S,Wiederman M,Lu Z,Xu CS,Plaza SM,Scheffer LK,Hess HF,Meinertzhagen IA

    更新日期:2018-11-01 00:00:00

  • FBXL19 recruits CDK-Mediator to CpG islands of developmental genes priming them for activation during lineage commitment.

    abstract::CpG islands are gene regulatory elements associated with the majority of mammalian promoters, yet how they regulate gene expression remains poorly understood. Here, we identify FBXL19 as a CpG island-binding protein in mouse embryonic stem (ES) cells and show that it associates with the CDK-Mediator complex. We discov...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.37084

    authors: Dimitrova E,Kondo T,Feldmann A,Nakayama M,Koseki Y,Konietzny R,Kessler BM,Koseki H,Klose RJ

    更新日期:2018-05-29 00:00:00

  • Maintaining neural stem cell identity in the brain.

    abstract::In the developing fruit fly brain, a protein called Trithorax increases the number of neural cells produced from a single stem cell, in part by regulating the transcription of the target genes buttonhead and pointed. ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.05000

    authors: Jiang Y,Reichert H

    更新日期:2014-11-06 00:00:00

  • Blue light-induced LOV domain dimerization enhances the affinity of Aureochrome 1a for its target DNA sequence.

    abstract::The design of synthetic optogenetic tools that allow precise spatiotemporal control of biological processes previously inaccessible to optogenetic control has developed rapidly over the last years. Rational design of such tools requires detailed knowledge of allosteric light signaling in natural photoreceptors. To und...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.11860

    authors: Heintz U,Schlichting I

    更新日期:2016-01-12 00:00:00

  • KATANIN-dependent mechanical properties of the stigmatic cell wall mediate the pollen tube path in Arabidopsis.

    abstract::Successful fertilization in angiosperms depends on the proper trajectory of pollen tubes through the pistil tissues to reach the ovules. Pollen tubes first grow within the cell wall of the papilla cells, applying pressure to the cell. Mechanical forces are known to play a major role in plant cell shape by controlling ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.57282

    authors: Riglet L,Rozier F,Kodera C,Bovio S,Sechet J,Fobis-Loisy I,Gaude T

    更新日期:2020-09-01 00:00:00

  • Dual histone methyl reader ZCWPW1 facilitates repair of meiotic double strand breaks in male mice.

    abstract::Meiotic crossovers result from homology-directed repair of DNA double-strand breaks (DSBs). Unlike yeast and plants, where DSBs are generated near gene promoters, in many vertebrates DSBs are enriched at hotspots determined by the DNA binding activity of the rapidly evolving zinc finger array of PRDM9 (PR domain zinc ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.53360

    authors: Mahgoub M,Paiano J,Bruno M,Wu W,Pathuri S,Zhang X,Ralls S,Cheng X,Nussenzweig A,Macfarlan TS

    更新日期:2020-04-30 00:00:00

  • Notochord vacuoles absorb compressive bone growth during zebrafish spine formation.

    abstract::The vertebral column or spine assembles around the notochord rod which contains a core made of large vacuolated cells. Each vacuolated cell possesses a single fluid-filled vacuole, and loss or fragmentation of these vacuoles in zebrafish leads to spine kinking. Here, we identified a mutation in the kinase gene dstyk tha...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.51221

    authors: Bagwell J,Norman J,Ellis K,Peskin B,Hwang J,Ge X,Nguyen SV,McMenamin SK,Stainier DY,Bagnat M

    更新日期:2020-01-29 00:00:00

  • Caught in a TrAP.

    abstract::Some DNA viruses overcome plant defenses by producing a suppressor protein that blocks the silencing of viral genes. ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.11509

    authors: Ré DA,Manavella PA

    更新日期:2015-10-16 00:00:00

  • Finding FISH in a small pond.

    abstract::Advanced microscopy and labeling techniques reveal that bacteria localize mRNAs within their cells in a similar way to eukaryotes. ...

    journal_title:eLife

    pub_type: 评论,杂志文章

    doi:10.7554/eLife.16598

    authors: Jan CH

    更新日期:2016-05-20 00:00:00

  • Multi-phosphorylation reaction and clustering tune Pom1 gradient mid-cell levels according to cell size.

    abstract::Protein concentration gradients pattern developing organisms and single cells. In Schizosaccharomyces pombe rod-shaped cells, Pom1 kinase forms gradients with maxima at cell poles. Pom1 controls the timing of mitotic entry by inhibiting Cdr2, which forms stable membrane-associated nodes at mid-cell. Pom1 gradients rel...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.45983

    authors: Gerganova V,Floderer C,Archetti A,Michon L,Carlini L,Reichler T,Manley S,Martin SG

    更新日期:2019-05-03 00:00:00

  • Cell-cycle-gated feedback control mediates desensitization to interferon stimulation.

    abstract::Cells use molecular circuits to interpret and respond to extracellular cues, such as hormones and cytokines, which are often released in a temporally varying fashion. In this study, we combine microfluidics, time-lapse microscopy, and computational modeling to investigate how the type I interferon (IFN)-responsive reg...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.58825

    authors: Mudla A,Jiang Y,Arimoto KI,Xu B,Rajesh A,Ryan AP,Wang W,Daugherty MD,Zhang DE,Hao N

    更新日期:2020-09-18 00:00:00

  • Actin filaments target the oligomeric maturation of the dynamin GTPase Drp1 to mitochondrial fission sites.

    abstract::While the dynamin GTPase Drp1 plays a critical role during mitochondrial fission, mechanisms controlling its recruitment to fission sites are unclear. A current assumption is that cytosolic Drp1 is recruited directly to fission sites immediately prior to fission. Using live-cell microscopy, we find evidence for a diff...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.11553

    authors: Ji WK,Hatch AL,Merrill RA,Strack S,Higgs HN

    更新日期:2015-11-26 00:00:00

  • Assembling the Tat protein translocase.

    abstract::The twin-arginine protein translocation system (Tat) transports folded proteins across the bacterial cytoplasmic membrane and the thylakoid membranes of plant chloroplasts. The Tat transporter is assembled from multiple copies of the membrane proteins TatA, TatB, and TatC. We combine sequence co-evolution analysis, mo...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.20718

    authors: Alcock F,Stansfeld PJ,Basit H,Habersetzer J,Baker MA,Palmer T,Wallace MI,Berks BC

    更新日期:2016-12-03 00:00:00

  • Exploring chromosomal structural heterogeneity across multiple cell lines.

    abstract::Using computer simulations, we generate cell-specific 3D chromosomal structures and compare them to recently published chromatin structures obtained through microscopy. We demonstrate using machine learning and polymer physics simulations that epigenetic information can be used to predict the structural ensembles of m...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.60312

    authors: Cheng RR,Contessoto VG,Lieberman Aiden E,Wolynes PG,Di Pierro M,Onuchic JN

    更新日期:2020-10-13 00:00:00

  • Sorting of a multi-subunit ubiquitin ligase complex in the endolysosome system.

    abstract::The yeast Dsc E3 ligase complex has long been recognized as a Golgi-specific protein ubquitination system. It shares a striking sequence similarity to the Hrd1 complex that plays critical roles in the ER-associated degradation pathway. Using biochemical purification and mass spectrometry, we identified two novel Dsc s...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.33116

    authors: Yang X,Arines FM,Zhang W,Li M

    更新日期:2018-01-22 00:00:00

  • Direct live imaging of cell-cell protein transfer by transient outer membrane fusion in Myxococcus xanthus.

    abstract::In bacteria, multicellular behaviors are regulated by cell-cell signaling through the exchange of both diffusible and contact-dependent signals. In a multicellular context, Myxococcus cells can share outer membrane (OM) materials by an unknown mechanism involving the traAB genes and gliding motility. Using live imagin...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.00868

    authors: Ducret A,Fleuchot B,Bergam P,Mignot T

    更新日期:2013-07-23 00:00:00