Distinct responses from bacterial, archaeal and fungal streambed communities to severe hydrological disturbances.

Abstract:

:Stream microbes that occur in the Mediterranean Basin have been shown to possess heightened sensitivity to intensified water stress attributed to climate change. Here, we investigate the effects of long-term drought (150 days), storms and rewetting (7 days) on the diversity and composition of archaea, bacteria and fungi inhabiting intermittent streambed sediment (surface and hyporheic) and buried leaves. Hydrological alterations modified the archaeal community composition more than the bacterial community composition, whereas fungi were the least affected. Throughout the experiment, archaeal communities colonizing sediments showed greater phylogenetic distances compared to those of bacteria and fungi, suggesting considerable adaptation to severe hydrological disturbances. The increase in the class abundances, such as those of Thermoplasmata within archaea and of Actinobacteria and Bacilli within bacteria, revealed signs of transitioning to a drought-favoured and soil-like community composition. Strikingly, we found that in comparison to the drying phase, water return (as sporadic storms and rewetting) led to larger shifts in the surface microbial community composition and diversity. In addition, microhabitat characteristics, such as the greater capacity of the hyporheic zone to maintain/conserve moisture, tended to modulate the ability of certain microbes (e.g., bacteria) to cope with severe hydrological disturbances.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Gionchetta G,Romaní AM,Oliva F,Artigas J

doi

10.1038/s41598-019-49832-4

subject

Has Abstract

pub_date

2019-09-18 00:00:00

pages

13506

issue

1

issn

2045-2322

pii

10.1038/s41598-019-49832-4

journal_volume

9

pub_type

杂志文章
  • Global identification and analysis of isozyme-specific possible substrates crosslinked by transglutaminases using substrate peptides in mouse liver fibrosis.

    abstract::The transglutaminase (TG) family comprises eight isozymes that form the isopeptide bonds between glutamine and lysine residues and contribute to the fibrotic diseases via crosslinking-mediated stabilization of ECM and the activation of TGF-β in several tissues. However, despite a growing body of evidence implicating T...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45049

    authors: Tatsukawa H,Tani Y,Otsu R,Nakagawa H,Hitomi K

    更新日期:2017-03-22 00:00:00

  • Enrichment of Eucalyptus oil nanoemulsion by micellar nanotechnology: transdermal analgesic activity using hot plate test in rats' assay.

    abstract::Eucalyptus globulus is an aromatic medicinal plant which known for its 1,8-cineole main pharmacological constituent exhibits as natural analgesic agent. Eucalyptus globulus-loaded micellar nanoparticle was developed via spontaneous emulsification technique and further evaluation for its analgesic efficacy study, in vi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-50134-y

    authors: Aziz ZAA,Nasir HM,Ahmad A,Setapar SHM,Ahmad H,Noor MHM,Rafatullah M,Khatoon A,Kausar MA,Ahmad I,Khan S,Al-Shaeri M,Ashraf GM

    更新日期:2019-09-23 00:00:00

  • An efficient micropropagation protocol for an endangered ornamental tree species (Magnolia sirindhorniae Noot. & Chalermglin) and assessment of genetic uniformity through DNA markers.

    abstract::Magnolia sirindhorniae Noot. & Chalermglin is an endangered species with high ornamental and commercial value that needs to be urgently protected and judiciously commercialized. In this study, a protocol for efficient regeneration of this species is standardized. The lateral buds of the M. sirindhorniae plant were use...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46050-w

    authors: Cui Y,Deng Y,Zheng K,Hu X,Zhu M,Deng X,Xi R

    更新日期:2019-07-03 00:00:00

  • Magnetotrichography: Measuring the dc magnetic field produced by hair follicles.

    abstract::We here describe the dc magnetic field over the human head produced by healthy hair follicles when the scalp is lightly pressed. This phenomenon was briefly reported decades earlier, where a double-planar SQUID (Superconducting Quantum Interference Devices) gradiometer at a single location was used. We here perform a ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-52110-y

    authors: Khan S,Cohen D

    更新日期:2019-10-30 00:00:00

  • Quantifying the role of motor imagery in brain-machine interfaces.

    abstract::Despite technical advances in brain machine interfaces (BMI), for as-yet unknown reasons the ability to control a BMI remains limited to a subset of users. We investigate whether individual differences in BMI control based on motor imagery (MI) are related to differences in MI ability. We assessed whether differences ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep24076

    authors: Marchesotti S,Bassolino M,Serino A,Bleuler H,Blanke O

    更新日期:2016-04-07 00:00:00

  • Outdoor Temperature, Heart Rate and Blood Pressure in Chinese Adults: Effect Modification by Individual Characteristics.

    abstract::We collected data from Kailuan cohort study from 2006 to 2011 to examine whether short-term effects of ambient temperature on heart rate (HR) and blood pressure (BP) are non-linear or linear, and their potential modifying factors. The HR, BP and individual information, including basic characteristics, life style, soci...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21003

    authors: Madaniyazi L,Zhou Y,Li S,Williams G,Jaakkola JJ,Liang X,Liu Y,Wu S,Guo Y

    更新日期:2016-02-15 00:00:00

  • Perception of an ambiguous figure is affected by own-age social biases.

    abstract::Although the perception of faces depends on low-level neuronal processes, it is also affected by high-level social processes. Faces from a social in-group, such as people of a similar age, receive more in-depth processing and are processed holistically. To explore whether own-age biases affect subconscious face percep...

    journal_title:Scientific reports

    pub_type: 临床试验,杂志文章

    doi:10.1038/s41598-018-31129-7

    authors: Nicholls MER,Churches O,Loetscher T

    更新日期:2018-08-23 00:00:00

  • Space division multiplexing chip-to-chip quantum key distribution.

    abstract::Quantum cryptography is set to become a key technology for future secure communications. However, to get maximum benefit in communication networks, transmission links will need to be shared among several quantum keys for several independent users. Such links will enable switching in quantum network nodes of the quantu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-12309-3

    authors: Bacco D,Ding Y,Dalgaard K,Rottwitt K,Oxenløwe LK

    更新日期:2017-09-29 00:00:00

  • Simulating photoacoustic waves produced by individual biological particles with spheroidal wave functions.

    abstract::Under the usual approximation of treating a biological particle as a spheroidal droplet, we consider the analysis of its size and shape with the high frequency photoacoustics and develop a numerical method which can simulate its characteristic photoacoustic waves. This numerical method is based on the calculation of s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep14801

    authors: Li Y,Fang H,Min C,Yuan X

    更新日期:2015-10-07 00:00:00

  • Orientational Mapping Augmented Sub-Wavelength Hyper-Spectral Imaging of Silk.

    abstract::Molecular alignment underpins optical, mechanical, and thermal properties of materials, however, its direct measurement from volumes with micrometer dimensions is not accessible, especially, for structurally complex bio-materials. How the molecular alignment is linked to extraordinary properties of silk and its amorph...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07502-3

    authors: Ryu M,Balčytis A,Wang X,Vongsvivut J,Hikima Y,Li J,Tobin MJ,Juodkazis S,Morikawa J

    更新日期:2017-08-07 00:00:00

  • An experimental study of network effects on coordination in asymmetric games.

    abstract::Network structure has often proven to be important in understanding the decision behavior of individuals or agents in different interdependent situations. Computational studies predict that network structure has a crucial influence on behavior in iterated 2 by 2 asymmetric 'battle of the sexes' games. We test such beh...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-43260-0

    authors: Broere J,Buskens V,Stoof H,Sánchez A

    更新日期:2019-05-02 00:00:00

  • A signal processing method for alignment-free metagenomic binning: multi-resolution genomic binary patterns.

    abstract::Algorithms in bioinformatics use textual representations of genetic information, sequences of the characters A, T, G and C represented computationally as strings or sub-strings. Signal and related image processing methods offer a rich source of alternative descriptors as they are designed to work in the presence of no...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-38197-9

    authors: Kouchaki S,Tapinos A,Robertson DL

    更新日期:2019-02-15 00:00:00

  • Divergence of stable isotopes in tap water across China.

    abstract::Stable isotopes in water (e.g., δ2H and δ18O) are important indicators of hydrological and ecological patterns and processes. Tap water can reflect integrated features of regional hydrological processes and human activities. China is a large country with significant meteorological and geographical variations. This rep...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep43653

    authors: Zhao S,Hu H,Tian F,Tie Q,Wang L,Liu Y,Shi C

    更新日期:2017-03-02 00:00:00

  • Associating cryptogenic ischemic stroke in the young with cardiovascular risk factor phenotypes.

    abstract::Acute Ischemic Stroke (AIS) in the young is increasing in prevalence and the largest subtype within this cohort is cryptogenic. To curb this trend, new ways of defining cryptogenic stroke and associated risk factors are needed. We aimed to gain insights into the presence or absence of cardiovascular risk factors in ca...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79499-1

    authors: Dardick JM,Flomenbaum D,Labovitz DL,Cheng N,Liberman AL,Esenwa C

    更新日期:2021-01-11 00:00:00

  • Coherent Response of Vietnam and Sumatra-Java Upwellings to Cross-Equatorial Winds.

    abstract::Upwelling off Vietnam in the South China Sea (SCS) and the Sumatra-Java upwelling in the Indian Ocean significantly modulate regional variation in climate. Although located in different hemispheres, these upwellings nearly concur during the boreal summer; both are the result of wind-induced Ekman divergence. Beyond se...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-40246-w

    authors: Wu CR,Wang LC,Wang YL,Lin YF,Chiang TL,Hsin YC

    更新日期:2019-03-06 00:00:00

  • New ZrO2/Al2O3 Nanocomposite Fabricated from Hybrid Nanoparticles Prepared by CO2 Laser Co-Vaporization.

    abstract::Alumina toughened zirconia (ATZ) and zirconia toughened alumina (ZTA) are currently the materials of choice to meet the need for tough, strong, and bioinert ceramics for medical devices. However, the mechanical properties of ZrO2/Al2O3 dispersion ceramics could be considerably increased by reducing the corresponding g...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep20589

    authors: Bartolomé JF,Smirnov A,Kurland HD,Grabow J,Müller FA

    更新日期:2016-02-05 00:00:00

  • Numerical Simulation of Hemodynamic Changes in Central Veins after Tunneled Cuffed Central Venous Catheter Placement in Patients under Hemodialysis.

    abstract::The tunneled central venous catheter (CVC) plays an important role for hemodialysis patients, but CVC-related thrombosis in the central veins remain problematic. This study is the first try to numerically find out what hemodynamic parameters are predisposed to the initiation and formation of thrombus after CVC inserti...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-12456-7

    authors: Peng L,Qiu Y,Huang Z,Xia C,Dai C,Zheng T,Li Z

    更新日期:2017-11-21 00:00:00

  • Tumor-derived exosomes regulate expression of immune function-related genes in human T cell subsets.

    abstract::Tumor cell-derived exosomes (TEX) suppress functions of immune cells. Here, changes in the gene profiles of primary human T lymphocytes exposed in vitro to exosomes were evaluated. CD4(+) Tconv, CD8(+) T or CD4(+) CD39(+) Treg were isolated from normal donors' peripheral blood and co-incubated with TEX or exosomes iso...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep20254

    authors: Muller L,Mitsuhashi M,Simms P,Gooding WE,Whiteside TL

    更新日期:2016-02-04 00:00:00

  • Observation of terahertz-radiation-induced ionization in a single nano island.

    abstract::Terahertz (THz) electromagnetic wave has been widely used as a spectroscopic probe to detect the collective vibrational mode in vast molecular systems and investigate dielectric properties of various materials. Recent technological advances in generating intense THz radiation and the emergence of THz plasmonics operat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10280

    authors: Seo M,Kang JH,Kim HS,Hyong Cho J,Choi J,Min Jhon Y,Lee S,Hun Kim J,Lee T,Park QH,Kim C

    更新日期:2015-05-22 00:00:00

  • Circadian rhythmicity persists through the Polar night and midnight sun in Svalbard reindeer.

    abstract::Studies of locomotor activity in Svalbard reindeer reported the temporary absence of diel rhythms under Arctic photic conditions. However, using Lomb-Scargle periodogram analyses with high statistical power we found diel or circadian rhythmicity throughout the entire year in measures of behaviour, temperature in the r...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-32778-4

    authors: Arnold W,Ruf T,Loe LE,Irvine RJ,Ropstad E,Veiberg V,Albon SD

    更新日期:2018-09-27 00:00:00

  • Optical properties of drug metabolites in latent fingermarks.

    abstract::Drug metabolites usually have structures of split-ring resonators (SRRs), which might lead to negative permittivity and permeability in electromagnetic field. As a result, in the UV-vis region, the latent fingermarks images of drug addicts and non drug users are inverse. The optical properties of latent fingermarks ar...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep20336

    authors: Shen Y,Ai Q

    更新日期:2016-02-03 00:00:00

  • Heterogeneity assessment of functional T cell avidity.

    abstract::The potency of cellular immune responses strongly depends on T cell avidity to antigen. Yet, functional avidity measurements are rarely performed in patients, mainly due to the technical challenges of characterizing heterogeneous T cells. The mean functional T cell avidity can be determined by the IFN-γ Elispot assay,...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep44320

    authors: Ioannidou K,Baumgaertner P,Gannon PO,Speiser MF,Allard M,Hebeisen M,Rufer N,Speiser DE

    更新日期:2017-03-13 00:00:00

  • Somatic expression of unc-54 and vha-6 mRNAs declines but not pan-neuronal rgef-1 and unc-119 expression in aging Caenorhabditis elegans.

    abstract::Aging is a highly controlled biological process characterized by a progressive deterioration of various cellular activities. One of several hallmarks of aging describes a link to transcriptional alteration, suggesting that it may impact the steady-state mRNA levels. We analyzed the mRNA steady-state levels of polyCAG-...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10692

    authors: Adamla F,Ignatova Z

    更新日期:2015-06-02 00:00:00

  • Potential causal associations between vitamin D and uric acid: Bidirectional mediation analysis.

    abstract::Vitamin D deficiency, a major public-health worldwide, is associated with hyperuricemia but casual association is questioned. The study was conducted to determine potential causal associations between 25-hydroxy vitamin D (25(OH)D) and uric acid (UA). A cross-sectional study of the Electricity Generating Authority of ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep14528

    authors: Thakkinstian A,Anothaisintawee T,Chailurkit L,Ratanachaiwong W,Yamwong S,Sritara P,Ongphiphadhanakul B

    更新日期:2015-09-29 00:00:00

  • Attenuated NoGo-related beta desynchronisation and synchronisation in Parkinson's disease revealed by magnetoencephalographic recording.

    abstract::Parkinson's disease (PD) is a neurodegenerative disorder characterised by motor abnormalities. Many non-demented patients with PD have cognitive impairment especially in executive functions. Using magnetoencephalographic (MEG) recording combined with event-related desynchronisation/synchronisation (ERD/ERS) analysis, ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-43762-x

    authors: Wu HM,Hsiao FJ,Chen RS,Shan DE,Hsu WY,Chiang MC,Lin YY

    更新日期:2019-05-10 00:00:00

  • Author Correction: Flotillin-2 promotes metastasis of nasopharyngeal carcinoma by activating NF-κB and PI3K/Akt3 signaling pathways.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-020-63750-w

    authors: Liu J,Huang W,Ren C,Wen Q,Liu W,Yang X,Wang L,Zhu B,Zeng L,Feng X,Zhang C,Chen H,Jia W,Zhang L,Xia X,Chen Y

    更新日期:2020-04-20 00:00:00

  • Intrinsic and extrinsic noise of gene expression in lineage trees.

    abstract::Cell-to-cell heterogeneity is driven by stochasticity in intracellular reactions and the population dynamics. While these sources are usually studied separately, we develop an agent-based framework that accounts for both factors while tracking every single cell of a growing population. Apart from the common intrinsic ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35927-x

    authors: Thomas P

    更新日期:2019-01-24 00:00:00

  • Raised HIF1α during normoxia in high altitude pulmonary edema susceptible non-mountaineers.

    abstract::High altitude pulmonary edema (HAPE) susceptibility is associated with EGLN1 polymorphisms, we hypothesized that HAPE-susceptible (HAPE-S, had HAPE episode in past) subjects may exhibit abnormal HIF1α levels in normoxic conditions. We measured HIF1α levels in HAPE-S and HAPE resistant (HAPE-R, no HAPE episode) individ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep26468

    authors: Soree P,Gupta RK,Singh K,Desiraju K,Agrawal A,Vats P,Bharadwaj A,Baburaj TP,Chaudhary P,Singh VK,Verma S,Bajaj AC,Singh SB

    更新日期:2016-05-23 00:00:00

  • Pathway-based dissection of the genomic heterogeneity of cancer hallmarks' acquisition with SLAPenrich.

    abstract::Cancer hallmarks are evolutionary traits required by a tumour to develop. While extensively characterised, the way these traits are achieved through the accumulation of somatic mutations in key biological pathways is not fully understood. To shed light on this subject, we characterised the landscape of pathway alterat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-25076-6

    authors: Iorio F,Garcia-Alonso L,Brammeld JS,Martincorena I,Wille DR,McDermott U,Saez-Rodriguez J

    更新日期:2018-04-30 00:00:00

  • Analysis of extracellular vesicles generated from monocytes under conditions of lytic cell death.

    abstract::Extracellular vesicles (EVs) are an important class of membrane-bound structures that have been widely investigated for their roles in intercellular communication in the contexts of tumor progression, vascular function, immunity and regenerative medicine. Much of the current knowledge on the functions of EVs pertains ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-44021-9

    authors: Baxter AA,Phan TK,Hanssen E,Liem M,Hulett MD,Mathivanan S,Poon IKH

    更新日期:2019-05-17 00:00:00