Deep learning enables high-quality and high-throughput prediction of enzyme commission numbers.

abstract：:Tentoxin, a natural cyclic tetrapeptide produced by phytopathogenic fungi from the Alternaria species affects the catalytic function of the chloroplast F(1)-ATPase in certain sensitive species of plants. In this study, we show that the uncompetitive inhibitor tentoxin binds to the alphabeta-interface of the chloroplas...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Groth G

更新日期：2002-03-19 00:00:00

abstract：:Mosquito repellency data on acylpiperidines derived from the U.S. Department of Agriculture archives were modeled by using molecular descriptors calculated by CODESSA PRO software. An artificial neural network model was developed for the correlation of these archival results and used to predict the repellent activity ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Katritzky AR,Wang Z,Slavov S,Tsikolia M,Dobchev D,Akhmedov NG,Hall CD,Bernier UR,Clark GG,Linthicum KJ

更新日期：2008-05-27 00:00:00

abstract：:Certain models of spoken-language processing, like those for many other perceptual and cognitive processes, posit continuous uptake of sensory input and dynamic competition between simultaneously active representations. Here, we provide compelling evidence for this continuity assumption by using a continuous response,...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Spivey MJ,Grosjean M,Knoblich G

更新日期：2005-07-19 00:00:00

abstract：:Lesion of the sciatic nerve caused a rapid increase in c-fos and c-jun mRNA that was followed about 2 hr later by an increase in nerve growth factor (NGF) mRNA. To evaluate whether the initial increase in c-fos mRNA is causally related to the subsequent increase in NGF mRNA, we performed experiments with fibroblasts o...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Hengerer B,Lindholm D,Heumann R,Rüther U,Wagner EF,Thoenen H

更新日期：1990-05-01 00:00:00

abstract：:Like protein enzymes, RNA enzymes (ribozymes) provide specific binding sites for their substrates. We now show that equilibrium dissociation constants for complexes between the Tetrahymena ribozyme and its RNA substrates and products can be directly measured by electrophoresis in polyacrylamide gels containing divalen...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Pyle AM,McSwiggen JA,Cech TR

更新日期：1990-11-01 00:00:00

abstract：:Cytological preparations of interphase nuclei and chromosomes from mouse 3T6 cells prepared at various times after infection with the murine sarcomaleukemia virus complex were hybridized with the [(3)H]DNA product of the viral RNA-directed DNA polymerase. While uninfected nuclei had an average of 4 autoradiographic gr...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Loni MC,Green M

更新日期：1974-09-01 00:00:00

abstract：:RNA-directed DNA polymerase (reverse transcriptase) from leukocytes of individual leukemic patients can be grouped by velocity gradient analyses into two distinct classes, a low-molecular-weight (LMW) class of approximately 70,000 and a high-molecular-weight (HMW) class of 130,000 to 140,000. The reverse transcriptase...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Mondal H,Gallagher RE,Gallo RC

更新日期：1975-03-01 00:00:00

abstract：:HLA-DR2 is associated with susceptibility to multiple sclerosis (MS). A peptide from human myelin basic protein (MBP, residues 85-99) was previously found to bind to purified HLA-DR2 (DRA, DRB1*1501) and to be recognized by human MBP-specific T cell clones. Soluble HLA-DR2 was expressed in the baculovirus system by re...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Gauthier L,Smith KJ,Pyrdol J,Kalandadze A,Strominger JL,Wiley DC,Wucherpfennig KW

更新日期：1998-09-29 00:00:00

abstract：:The effects of urea and of guanidinium chloride on binding constants in water for 6-(4-tert-butylanilino)-naphthalene-2-sulfonate and of bis(p-tert-butylphenyl) phosphate binding to beta-cyclodextrin and to N,N'-bis(6-beta-cyclo-dextrinyl)imidazolium ion have been determined. Their effects on the water solubility of p...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Breslow R,Halfon S

更新日期：1992-08-01 00:00:00

abstract：:The sphinganine analog mycotoxin, AAL-toxin, induces a death process in plant and animal cells that shows apoptotic morphology. In nature, the AAL-toxin is the primary determinant of the Alternaria stem canker disease of tomato, thus linking apoptosis to this disease caused by Alternaria alternata f. sp. lycopersici. ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Lincoln JE,Richael C,Overduin B,Smith K,Bostock R,Gilchrist DG

更新日期：2002-11-12 00:00:00

abstract：:Gamma delta (γδ) T cells represent a major IL-17 committed T-cell population (γδT17 cells) in the mouse dermis. Following exposure to the inflammatory agent imiquimod (IMQ) the Vγ4(+) subset of γδT cells produce IL-17 in the skin and expand rapidly in draining lymph nodes (LNs). Local IMQ treatment in humans is known ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ramírez-Valle F,Gray EE,Cyster JG

更新日期：2015-06-30 00:00:00

abstract：:Utilizing the bicistronic reporter transposon mini-Tn5 lacZ-tet/1, we have identified lacZ fusions to four Escherichia coli genes/operons that are strongly activated by the accumulation of self-produced extracellular signals. These fusions were designated cma9, cma48, cma113, and cma114 for conditioned medium activate...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Baca-DeLancey RR,South MM,Ding X,Rather PN

更新日期：1999-04-13 00:00:00

abstract：:Patients with primary (AL) cardiac amyloidosis suffer from progressive cardiomyopathy with a median survival of less than 8 months and a 5-year survival of <10%. Contributing to this poor prognosis is the fact that these patients generally do not tolerate standard heart failure therapies. The molecular mechanisms unde...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Shi J,Guan J,Jiang B,Brenner DA,Del Monte F,Ward JE,Connors LH,Sawyer DB,Semigran MJ,Macgillivray TE,Seldin DC,Falk R,Liao R

更新日期：2010-03-02 00:00:00

abstract：:Ectopic activation of the Wnt signaling pathway is highly oncogenic for many human tissues. Here, we show that ectopic Wnt signaling increases the effective stem cell activity in mouse mammary glands in vivo. Furthermore, Wnt effectors induce the accumulation of mouse mammary epithelial progenitors (assayed by Hoechst...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Liu BY,McDermott SP,Khwaja SS,Alexander CM

更新日期：2004-03-23 00:00:00

abstract：:Members of the voltage-gated-like ion channel superfamily have a conserved pore structure. Transmembrane helices that line the pore (M2 or S6) are thought to gate it at the cytoplasmic end by bending at a hinge glycine residue. Proline residues favor bending of alpha-helices, and substitution of proline for this glyci...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Zhao Y,Scheuer T,Catterall WA

更新日期：2004-12-21 00:00:00

abstract：:The localization of calmodulin, a calcium-dependent modulator of many enzymes, was studied in rat liver, skeletal muscle, and adrenal slices. Calmodulin is found in liver cytoplasm, nucleus, and plasma membrane. Much of the cytoplasmic calmodulin is associated with glycogen particles presumably bound to enzymes involv...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Harper JF,Cheung WY,Wallace RW,Huang HL,Levine SN,Steiner AL

更新日期：1980-01-01 00:00:00

abstract：:O-GlcNAc glycosylation (or O-GlcNAcylation) is a dynamic, inducible posttranslational modification found on proteins associated with neurodegenerative diseases such as α-synuclein, amyloid precursor protein, and tau. Deletion of the O-GlcNAc transferase (ogt) gene responsible for the modification causes early postnata...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Wang AC,Jensen EH,Rexach JE,Vinters HV,Hsieh-Wilson LC

更新日期：2016-12-27 00:00:00

abstract：:Influenza viruses contain segmented, negative-strand RNA genomes. Genome segmentation facilitates reassortment between different influenza virus strains infecting the same cell. This phenomenon results in the rapid exchange of RNA segments. In this study, we have developed a method to prevent the free reassortment of ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Gao Q,Palese P

更新日期：2009-09-15 00:00:00

abstract：:Development of effective chemopreventive agents against prostate cancer (CaP) for humans requires conclusive evidence of their efficacy in animal models that closely emulates human disease. The autochthonous transgenic adenocarcinoma of the mouse prostate (TRAMP) model, which spontaneously develops metastatic CaP, is ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Gupta S,Hastak K,Ahmad N,Lewin JS,Mukhtar H

更新日期：2001-08-28 00:00:00

abstract：:The results obtained in this study establish that liposome formulations incorporating a synthetic polyethylene glycol-derivatized phospholipid have a pronounced effect on liposome tissue distribution and can produce a large increase in the pharmacological efficacy of encapsulated antitumor drugs. This effect is substa...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Papahadjopoulos D,Allen TM,Gabizon A,Mayhew E,Matthay K,Huang SK,Lee KD,Woodle MC,Lasic DD,Redemann C

更新日期：1991-12-15 00:00:00

abstract：:The rapid worldwide spread of severe acute respiratory syndrome demonstrated the potential threat an infectious disease poses in a closely interconnected and interdependent world. Here we introduce a probabilistic model that describes the worldwide spread of infectious diseases and demonstrate that a forecast of the g...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Hufnagel L,Brockmann D,Geisel T

更新日期：2004-10-19 00:00:00

abstract：:Populations of isogenic embryonic stem cells or clonal bacteria often exhibit extensive phenotypic heterogeneity that arises from intrinsic stochastic dynamics of cells. The phenotypic state of a cell can be transmitted epigenetically in cell division, leading to correlations in the states of cells related by descent....

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Hormoz S,Desprat N,Shraiman BI

更新日期：2015-05-05 00:00:00

abstract：:Tropical birds are relatively long-lived and produce few offspring, which develop slowly and mature relatively late in life, the slow end of the life-history axis, whereas temperate birds lie at the opposite end of this continuum. We tested the hypothesis that tropical birds have evolved a reduced basal metabolic rate...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Wiersma P,Muñoz-Garcia A,Walker A,Williams JB

更新日期：2007-05-29 00:00:00

abstract：:A molecular genetic approach employing polymorphic DNA markers has been used to investigate the role of chromosomal aberrations in meningioma, one of the most common tumors of the human nervous system. Comparison of the alleles detected by DNA markers in tumor DNA versus DNA from normal tissue revealed chromosomal alt...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Seizinger BR,de la Monte S,Atkins L,Gusella JF,Martuza RL

更新日期：1987-08-01 00:00:00

abstract：:Large-scale conformational changes in proteins are often associated with the binding of a substrate. Because conformational changes may be related to the function of an enzyme, understanding the kinetics and energetics of these motions is very important. We have delineated the atomically detailed conformational transi...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Arora K,Brooks CL 3rd

更新日期：2007-11-20 00:00:00

abstract：:Mutational inactivation of the retinoblastoma (RB) gene has been implicated in the genesis of retinoblastoma, osteosarcoma, and other human tumors. Our strategy has been to characterize naturally occurring mutants from tumor cells to pinpoint potential domains of RB protein crucial for tumor suppression. We show here ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Shew JY,Lin BT,Chen PL,Tseng BY,Yang-Feng TL,Lee WH

更新日期：1990-01-01 00:00:00

abstract：:High levels of inbreeding cause populations to become composed of homozygous, inbred lines. High levels of homozygosity limit the effectiveness of recombination, and therefore, retard the rate of decay of linkage (gametic phase) disequilibrium (LD) among mutations. Inbreeding and recombination interact to shape the ex...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Morrell PL,Toleno DM,Lundy KE,Clegg MT

更新日期：2005-02-15 00:00:00

abstract：:Polyclonal antibodies reactive with a cleavage site in human proinsulin (HPI) (C-peptide-A-chain junction) have been raised (rabbit, guinea pig) using a synthetic peptide antigen coupled with keyhole limpet hemocyanin. These antisera recognize native HPI and des-31,32-HPI equally well but react 20-50 times less well w...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Steiner DF,Michael J,Houghten R,Mathieu M,Gardner PR,Ravazzola M,Orci L

更新日期：1987-09-01 00:00:00

abstract：:Although it has long been recognized that the enteric community of bacteria that inhabit the human distal intestinal track broadly impacts human health, the biochemical details that underlie these effects remain largely undefined. Here, we report a broad MS-based metabolomics study that demonstrates a surprisingly lar...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Wikoff WR,Anfora AT,Liu J,Schultz PG,Lesley SA,Peters EC,Siuzdak G

更新日期：2009-03-10 00:00:00

abstract：:Antifreeze proteins (AFPs) are a diverse class of proteins that depress the kinetically observable freezing point of water. AFPs have been of scientific interest for decades, but the lack of an accurate model for predicting AFP activity has hindered the logical design of novel antifreeze systems. To address this, we p...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Kozuch DJ,Stillinger FH,Debenedetti PG

更新日期：2018-12-26 00:00:00