Paenibacillus polymyxa ND25: candidate genome for lignocellulosic biomass utilization.

Abstract:

:Genome sequence of Paenibacillus polymyxa ND25 isolated from cow rumen is reported for being a potential candidate in hydrolysis of lignocellulosic plant biomass. Draft genome sequence generated 5.73 Mb data containing 4922 putative protein coding genes, of which 140 are annotated for glycoside hydrolases. P. polymyxa ND25 strain comprises diverse lignocellulolytic components, especially 12 cellulase along with 23 hemicellulases and 11 esterases, signifying its potential for lignocellulose hydrolysis. Subsequent enzyme assay exhibited the potential of strain to produce 0.49, 0.24 and 0.44 U/ml U/ml of endoglucanase, exoglucanase and β-glucosidase, respectively, utilizing sugarcane bagasse as the sole carbon source. This study signifies the efficient application of P. polymyxa ND25 for facilitating plant-biomass utilization.

journal_name

3 Biotech

journal_title

3 Biotech

authors

Bohra V,Dafale NA,Purohit HJ

doi

10.1007/s13205-018-1274-3

subject

Has Abstract

pub_date

2018-05-01 00:00:00

pages

248

issue

5

eissn

2190-572X

issn

2190-5738

pii

1274

journal_volume

8

pub_type

杂志文章
  • Xanthine oxidase inhibitory and antioxidant potential of Indian Muscodor species.

    abstract::Xanthine oxidase is a key enzyme responsible for hyperuricemia, a pre-disposing factor for Gout and oxidative stress-related diseases. Only two clinically approved xanthine oxidase inhibitors Allopurinol and Febuxostat are currently used for treatment of hyperuricemia. However, owing to their side effects there is a n...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0569-5

    authors: Kapoor N,Saxena S

    更新日期:2016-12-01 00:00:00

  • In silico docking studies of α-amylase inhibitors from the anti-diabetic plant Leucas ciliata Benth. and an endophyte, Streptomyces longisporoflavus.

    abstract::In this investigation, potential inhibitors of α-amylase, one of the key regulatory enzymes in diabetes were characterized from the methanolic extract of Leucas ciliata Benth. (Lamiaceae), a traditional medicinal plant of the Western Ghats, southern India and the ethyl acetate extract of Streptomyces longisporoflavus ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02547-0

    authors: Akshatha JV,SantoshKumar HS,Prakash HS,Nalini MS

    更新日期:2021-02-01 00:00:00

  • Inhibition of respiratory syncytial virus replication and suppression of RSV-induced airway inflammation in neonatal rats by colchicine.

    abstract::The present study investigated the role of colchicine in the treatment of RSV infection. Treatment of BEAS-2B cells following RSV infection with colchicine caused a significant decrease in the number of viral plaques. In RSV-infected BEAS-2B cells' treatment with colchicine leads to a significant up-regulation of both...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1917-z

    authors: Lu N,Yang Y,Liu H,Ding X,Ou Y,Xia J,Du Y

    更新日期:2019-11-01 00:00:00

  • Deciphering the evolutionary affiliations among bacterial strains (Pseudomonas and Frankia sp.) inhabiting same ecological niche using virtual RFLP and simulation-based approaches.

    abstract::To decipher an evolutionary lineage between two different but important bacterial groups, i.e., Pseudomonas strain (γ-Proteobacteria) and Frankia strain (actinobacteria) growing in the same ecological niche in and around of an actinorhizal plant Hippophae salicifolia D. Don, genetic diversity and comparative molecular...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0488-5

    authors: Srivastava M,Kaushik MS,Srivastava A,Singh A,Verma E,Mishra AK

    更新日期:2016-12-01 00:00:00

  • Medium composition potentially regulates the anthocyanin production from suspension culture of Daucus carota.

    abstract::In the present study, an effort has been made to optimize various culture conditions for enhanced production of anthocyanin. Nutrient content of MS medium (ammonium to potassium nitrate ratio and phosphate concentration) had a profound influence on the cell biomass and anthocyanin accumulation in cell suspension cultu...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-018-1146-x

    authors: Saad KR,Parvatam G,Shetty NP

    更新日期:2018-03-01 00:00:00

  • Agricultural residues for cellulolytic enzyme production by Aspergillus niger: effects of pretreatment.

    abstract::Different agricultural residues were considered in this study for their ability to support cellulolytic enzyme production by Aspergillus niger. A total of eleven agricultural residues including finger millet hulls, sorghum hulls, soybean hulls, groundnut husk, banana peels, corn stalk, cassava peels, sugarcane bagasse...

    journal_title:3 Biotech

    pub_type:

    doi:10.1007/s13205-015-0294-5

    authors: Salihu A,Abbas O,Sallau AB,Alam MZ

    更新日期:2015-12-01 00:00:00

  • Subtle changes in light intensity affect in vitro responses but not ex vitro performance of Limonium sinuatum.

    abstract::Environmental conditions during the in vitro stages of a micropropagation process can further affect the ex vitro plant performance. In this work, the behaviour of four blue cultivars of statice (Limonium sinuatum) was studied with respect to four distances (18.0, 12.5, 8.0, or 2.0 cm) between culture tubes and the li...

    journal_title:3 Biotech

    pub_type:

    doi:10.1007/s13205-018-1367-z

    authors: Sánchez-Sánchez J,López-Orenes A,Ferrer MA,Calderón AA

    更新日期:2018-08-01 00:00:00

  • miRNomes involved in imparting thermotolerance to crop plants.

    abstract::Thermal stress is one of the challenges to crop plants that negatively impacts crop yield. To overcome this ever-growing problem, utilization of regulatory mechanisms, especially microRNAs (miRNAs), that provide efficient and precise regulation in a targeted manner have been found to play determining roles. Besides th...

    journal_title:3 Biotech

    pub_type: 杂志文章,评审

    doi:10.1007/s13205-018-1521-7

    authors: Gahlaut V,Baranwal VK,Khurana P

    更新日期:2018-12-01 00:00:00

  • Biotransformation of phenol in synthetic wastewater using the functionalized magnetic nano-biocatalyst particles carrying tyrosinase.

    abstract::Low conversion efficiency and long-processing time are some of the major problems associated with the use of biocatalysts in industrial processes. In this study, modified magnetic iron oxide nanoparticles bearing tyrosinase (tyrosinase-MNPs) were employed as a magnetic nano-biocatalyst to treat phenol-containing waste...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-018-1445-2

    authors: Abdollahi K,Yazdani F,Panahi R,Mokhtarani B

    更新日期:2018-10-01 00:00:00

  • Synthesis, characterization and biological applications of mycosynthesized silver nanoparticles.

    abstract::Silver nanoparticles (AgNPs) have been known for their inhibitory and bactericidal effects. In the present study, less toxic AgNPs using Cunninghamella echinulata is reported for the first time. The obtained AgNPs were characterized using UV-Visible spectrophotometer, XRD, FT-IR, FE-SEM with EDAX and HR-TEM. AgNPs sho...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0961-9

    authors: Anbazhagan S,Azeez S,Morukattu G,Rajan R,Venkatesan K,Thangavelu KP

    更新日期:2017-10-01 00:00:00

  • Biochemical and functional properties of a lectin purified from the seeds of Cicer arietinum L.

    abstract::A 35 kDa rabbit erythrocyte agglutinating lectin from the seeds of Cicer arietinum was purified and designated as CAL. The lectin was inhibited by fetuin and N-acetyl-d-galactosamine at a concentration of 20 and 50 mM respectively, but not by simple mono or oligosaccharides. CAL is active between pH 5 and 10 presented...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-018-1272-5

    authors: Gautam AK,Srivastava N,Nagar DP,Bhagyawant SS

    更新日期:2018-06-01 00:00:00

  • Genome of a known but distinct begomovirus associated with a novel satellite molecule infecting a new host bitter gourd (Momordica charantia).

    abstract::Coccinia mosaic Virdhunagar virus (KY860899), Tomato leaf curl New Delhi virus (KY860898) and Tomato leaf curl Virdhunagar alphasatellite (KY848691) were found to be associated with leaf curl disease in Momordica charantia (bitter gourd). The complete nucleotide sequence of Coccinia mosaic Virdhunagar virus showed 82%...

    journal_title:3 Biotech

    pub_type:

    doi:10.1007/s13205-019-1775-8

    authors: Muthupandi K,Marwal A,Tennyson J

    更新日期:2019-06-01 00:00:00

  • Immobilization of endoglucanase Cel9A on chitosan nanoparticles leads to its stabilization against organic solvents: the use of polyols to improve the stability.

    abstract::The immobilization of enzymes improves their stability in non-conventional media such as organic solvents. In this work, the effects of solvents (DMSO, methanol, ethanol, and n-propanol) on the endoglucanase Cel9A activity and stability were studied. Then, the enzymes were stabilized by its immobilization on chitosan ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1794-5

    authors: Mohammadi M,Najavand S,Pazhang M

    更新日期:2019-07-01 00:00:00

  • Combined effects of Allium sativum and Cuminum cyminum essential oils on planktonic and biofilm forms of Salmonella typhimurium isolates.

    abstract::Salmonella typhimurium (S. typhimurium) represents an important global public health problem and has the ability to survive under desiccation conditions in foods and food processing facilities for years. The aim of this study was to investigate the effects of Allium sativum (A. sativum) and Cuminum cyminum (C. cyminum...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02286-2

    authors: Hakimi Alni R,Ghorban K,Dadmanesh M

    更新日期:2020-07-01 00:00:00

  • Molecular characterization of teosinte branched1 gene governing branching architecture in cultivated maize and wild relatives.

    abstract::We sequenced the entire tb1 gene in six maize inbreds and its wild relatives (parviglumis, mexicana, perennis and luxurians) to characterize it at molecular level. Hopscotch and Tourist transposable elements were observed in the upstream of tb1 in all maize inbreds, while they were absent in wild relatives. In maize, ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-2052-6

    authors: Prakash NR,Chhabra R,Zunjare RU,Muthusamy V,Hossain F

    更新日期:2020-02-01 00:00:00

  • Emerging roles of mistletoes in malignancy management.

    abstract::Mistletoes are a group of obligate plant semi-parasites in the order Santalales. These clumps of plants growing on a wide range of host plants have been traditionally regarded as medicinal repositories. However, current scientific discoveries have validated their health potentials like never before. Their extracts con...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-013-0124-6

    authors: Patel S,Panda S

    更新日期:2014-02-01 00:00:00

  • Disease management of tomato through PGPB: current trends and future perspective.

    abstract::Tomato is the world's second most cultivated vegetable. During cultivation or post-harvest storage, it is susceptible to more than 200 diseases caused by an array of pathogenic fungi, nematodes, bacteria, and viruses. Although wide range of chemical pesticides are currently available to manage plant diseases, continuo...

    journal_title:3 Biotech

    pub_type: 杂志文章,评审

    doi:10.1007/s13205-017-0896-1

    authors: Singh VK,Singh AK,Kumar A

    更新日期:2017-08-01 00:00:00

  • Evaluation of indigenous Trichoderma isolates from Manipur as biocontrol agent against Pythium aphanidermatum on common beans.

    abstract::Pythium aphanidermatum is one of the common causal pathogen of damping-off disease of beans (Phaseolus vulgaris L.) grown in Manipur. A total of 110 indigenous Trichoderma isolates obtained from North east India were screened for their biocontrol activity which can inhibit the mycelial growth of P. aphanidermatum, the...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-011-0027-3

    authors: Kamala T,Indira S

    更新日期:2011-12-01 00:00:00

  • Culturable endophytic bacteria associated with medicinal plant Ferula songorica: molecular phylogeny, distribution and screening for industrially important traits.

    abstract::Xinjiang, a region of high salinity and drought, is a host to many arid and semi-arid plants. Many of these plants including Ferula spp. have indigenous pharmaceutical histories. As many of the medicinal properties of plants are in tandem with the associated microorganisms residing within the plant tissues, it is advi...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0522-7

    authors: Liu YH,Guo JW,Salam N,Li L,Zhang YG,Han J,Mohamad OA,Li WJ

    更新日期:2016-12-01 00:00:00

  • Biodegradation of propiconazole by newly isolated Burkholderia sp. strain BBK_9.

    abstract::The isolation of propiconazole (PCZ) degrading bacterium BBK_9 strain was done from paddy soil, and it was identified as Burkholderia sp. based on the morphological characteristics and biochemical properties combined with 16S rRNA gene sequencing analysis. It has been seen that the factors such as temperature and pH i...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0429-3

    authors: Satapute P,Kaliwal B

    更新日期:2016-06-01 00:00:00

  • Enhanced transgene expression using two β-globin MARs flanking expression cassettes in stably transfected CHO-K1 cells.

    abstract::In this study, we systemically investigated the positions and orientations of matrix attachment regions (MARs) in expression vectors to fully explore the mechanism for improving transgene expression. We constructed 14 vectors that incorporated human β-globin MARs into pIRES-eGFP backbone vectors. The MARs flanked the ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1971-6

    authors: Zhang J,Zhang J,Cheng S,Yang W,Li S

    更新日期:2019-11-01 00:00:00

  • Comparative assessment of four RNA extraction methods and modification to obtain high-quality RNA from Parthenium hysterophorus leaf.

    abstract::Isolation of high-quality RNA from weed plants such as Parthenium hysterophorus is a difficult task due to the hindrance caused by numerous secondary metabolites. Such metabolites not only affect the quality and yield of RNA, but also limit the quality of downstream applications. Therefore, the present study was under...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-1003-3

    authors: Ahmad J,Baig MA,Ali AA,Al-Huqail A,Ibrahim MM,Qureshi MI

    更新日期:2017-12-01 00:00:00

  • Identification and characterization of finger millet OPAQUE2 transcription factor gene under different nitrogen inputs for understanding their role during accumulation of prolamin seed storage protein.

    abstract::In this study, we report the isolation and characterization of the mRNA encoding OPAQUE2 (O2) like TF of finger millet (FM) (Eleusine coracana) (EcO2). Full-length EcO2 mRNA was isolated using conserved primers designed by aligning O2 mRNAs of different cereals followed by 3' and 5' RACE (Rapid Amplification of cDNA E...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-018-1150-1

    authors: Gaur VS,Kumar L,Gupta S,Jaiswal JP,Pandey D,Kumar A

    更新日期:2018-03-01 00:00:00

  • Purification and characterization of detergent-compatible protease from Aspergillus terreus gr.

    abstract::The possibility of using Aspergillus terreus protease in detergent formulations was investigated. Sodium dodecyl sulfate (SDS) and native polyacrylamide gel electrophoresis indicated that the purified alkaline protease (148.9 U/mg) is a monomeric enzyme with a molecular mass of 16 ± 1 kDa. This was confirmed by liquid...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-014-0200-6

    authors: Niyonzima FN,More SS

    更新日期:2015-02-01 00:00:00

  • Genome-wide analysis of Chongqing native intersexual goats using next-generation sequencing.

    abstract::Sex reversal has been studied extensively in vertebrate species, particularly in domestic goats, because polled intersex syndrome (PIS) has seriously affected their production efficiency. In the present study, we used histopathologically diagnosed cases of PIS to identify correlated genomic regions and variants using ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1612-0

    authors: E GX,Jin ML,Zhao YJ,Li XL,Li LH,Yang BG,Duan XH,Huang YF

    更新日期:2019-03-01 00:00:00

  • Heliomycin and tetracinomycin D: anthraquinone derivatives with histone deacetylase inhibitory activity from marine sponge-associated Streptomyces sp. SP9.

    abstract::Several actinomycetes strains were isolated from different marine sponges collected from the Red Sea shore in Egypt. The efficiency of their crude extracts to inhibit histone deacetylase (HDAC) enzyme was investigated in the nuclear extract of Hela cell line. The crude extract corresponding to Streptomyces sp. SP9 iso...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-018-1304-1

    authors: Abdelfattah MS,Elmallah MIY,Faraag AHI,Hebishy AMS,Ali NH

    更新日期:2018-06-01 00:00:00

  • Single and combined effects of acetic acid, furfural, and sugars on the growth of the pentose-fermenting yeast Meyerozyma guilliermondii.

    abstract::The tolerance of the pentose-fermenting yeast Meyerozyma guilliermondii to the inhibitors released after the biomass hydrolysis, such as acetic acid and furfural, was surveyed. We first verified the effects of acetic acid and cell concentrations and initial pH on the growth of a M. guilliermondii strain in a semi-synt...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-018-1143-0

    authors: Perna MDSC,Bastos RG,Ceccato-Antonini SR

    更新日期:2018-02-01 00:00:00

  • Encapsulation of epigallocatechin-3-gallate into albumin nanoparticles improves pharmacokinetic and bioavailability in rat model.

    abstract::In the present study, we fabricated epigallocatechin-3-gallate (EGCG) loaded albumin nanoparticles (Alb-NP-EGCG) to enhance bioavailability and improve pharmacokinetic parameters of EGCG. The physicochemical properties of the Alb-NP-EGCG were studied using scanning electron microscopy, differential scanning calorimetr...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1772-y

    authors: Ramesh N,Mandal AKA

    更新日期:2019-06-01 00:00:00

  • Biostimulation potentials of corn steep liquor in enhanced hydrocarbon degradation in chronically polluted soil.

    abstract::The effects of corn steep liquor (CSL) on hydrocarbon degradation and microbial community structure and function was evaluated in field-moist soil microcosms. Chronically polluted soil treated with CSL (AB4) and an untreated control (3S) was compared over a period of 6 weeks. Gas chromatographic fingerprints of residu...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1580-4

    authors: Salam LB,Ishaq A

    更新日期:2019-02-01 00:00:00

  • Recent biotechnological advances as potential intervention strategies against COVID-19.

    abstract::The emerging SARS-CoV-2 viral disease (COVID-19) has caused a global health alert due to its high rate of infection and mortality in individuals with chronic cardiovascular comorbidities, in addition to generating complex clinical conditions. This has forced the scientific community to explore different strategies tha...

    journal_title:3 Biotech

    pub_type: 杂志文章,评审

    doi:10.1007/s13205-020-02619-1

    authors: Lobo-Galo N,Gálvez-Ruíz JC,Balderrama-Carmona AP,Silva-Beltrán NP,Ruiz-Bustos E

    更新日期:2021-02-01 00:00:00