ATR-FTIR spectral discrimination between normal and tumorous mouse models of lymphoma and melanoma from serum samples.

Abstract:

:This study presents, attenuated total reflection Fourier transforms infrared spectroscopy of dried serum samples in an effort to assess biochemical changes induced by non-Hodgkin's lymphoma and subcutaneous melanoma. An EL4 mouse model of non-Hodgkin lymphoma and a B16 mouse model of subcutaneous melanoma are used to extract a snapshot of tumor-associated alteration in the serum. The study of both cancer-bearing mouse models in wild types and their corresponding control types, emphasizes the diagnostic potential of this approach as a screening technique for non-Hodgkin lymphoma and melanoma skin cancer. Infrared absorbance values of the different spectral bands, hierarchical clustering and integral values of the component bands by curve fitting, show statistically significant differences (student's t-test, two-tailed unequal variance p-value < 0.05) between spectra representing healthy and tumorous mouse. This technique may thus be useful for having individualized route maps for rapid evaluation of lymphoma and melanoma status and associated therapeutic modalities.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Ghimire H,Venkataramani M,Bian Z,Liu Y,Perera AGU

doi

10.1038/s41598-017-17027-4

subject

Has Abstract

pub_date

2017-12-05 00:00:00

pages

16993

issue

1

issn

2045-2322

pii

10.1038/s41598-017-17027-4

journal_volume

7

pub_type

杂志文章
  • Acute and chronic mitochondrial respiratory chain deficiency differentially regulate lysosomal biogenesis.

    abstract::Mitochondria are key cellular signaling platforms, affecting fundamental processes such as cell proliferation, differentiation and death. However, it remains unclear how mitochondrial signaling affects other organelles, particularly lysosomes. Here, we demonstrate that mitochondrial respiratory chain (RC) impairments ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45076

    authors: Fernández-Mosquera L,Diogo CV,Yambire KF,Santos GL,Luna Sánchez M,Bénit P,Rustin P,Lopez LC,Milosevic I,Raimundo N

    更新日期:2017-03-27 00:00:00

  • Deep sequencing reveals the eight facets of the influenza A/HongKong/1/1968 (H3N2) virus cap-snatching process.

    abstract::The influenza A virus RNA polymerase cleaves the 5' end of host pre-mRNAs and uses the capped RNA fragments as primers for viral mRNA synthesis. We performed deep sequencing of the 5' ends of viral mRNAs from all genome segments transcribed in both human (A549) and mouse (M-1) cells infected with the influenza A/HongK...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06181

    authors: Sikora D,Rocheleau L,Brown EG,Pelchat M

    更新日期:2014-08-26 00:00:00

  • Tuning the photo-response in monolayer MoS2 by plasmonic nano-antenna.

    abstract::Monolayer molybdenum disulfide (MoS2) has recently attracted intense interests due to its remarkable optical properties of valley-selected optical response, strong nonlinear wave mixing and photocurrent/photovoltaic generation and many corresponding potential applications. However, the nature of atomic-thin thickness ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep23626

    authors: Li J,Ji Q,Chu S,Zhang Y,Li Y,Gong Q,Liu K,Shi K

    更新日期:2016-03-31 00:00:00

  • Detection of the Malaria causing Plasmodium Parasite in Saliva from Infected Patients using Topoisomerase I Activity as a Biomarker.

    abstract::Malaria is among the major threats to global health with the main burden of disease being in rural areas of developing countries where accurate diagnosis based on non-invasive samples is in high demand. We here present a novel molecular assay for detection of malaria parasites based on technology that may be adapted f...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-22378-7

    authors: Hede MS,Fjelstrup S,Lötsch F,Zoleko RM,Klicpera A,Groger M,Mischlinger J,Endame L,Veletzky L,Neher R,Simonsen AKW,Petersen E,Mombo-Ngoma G,Stougaard M,Ho YP,Labouriau R,Ramharter M,Knudsen BR

    更新日期:2018-03-07 00:00:00

  • Classification of naturally evoked compound action potentials in peripheral nerve spatiotemporal recordings.

    abstract::Peripheral neural signals have the potential to provide the necessary motor, sensory or autonomic information for robust control in many neuroprosthetic and neuromodulation applications. However, developing methods to recover information encoded in these signals is a significant challenge. We introduce the idea of usi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-47450-8

    authors: Koh RGL,Nachman AI,Zariffa J

    更新日期:2019-07-31 00:00:00

  • Combinatorial metabolic engineering of Pseudomonas putida KT2440 for efficient mineralization of 1,2,3-trichloropropane.

    abstract::An industrial waste, 1,2,3-trichloropropane (TCP), is toxic and extremely recalcitrant to biodegradation. To date, no natural TCP degraders able to mineralize TCP aerobically have been isolated. In this work, we engineered a biosafety Pseudomonas putida strain KT2440 for aerobic mineralization of TCP by implantation o...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07435-x

    authors: Gong T,Xu X,Che Y,Liu R,Gao W,Zhao F,Yu H,Liang J,Xu P,Song C,Yang C

    更新日期:2017-08-01 00:00:00

  • The Preparation and Properties of Porous Sepiolite Ceramics.

    abstract::In this paper, a new type of porous ceramics was prepared using the raw sepiolite mineral. The porous ceramics was shaped by the dry pressing method and sintered in the range of 700 ~ 1200 °C. The temperature-microstructure evolution and the properties of porous sepiolite ceramics were investigated by thermo gravimetr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-43918-9

    authors: Tian L,Wang L,Wang K,Zhang Y,Liang J

    更新日期:2019-05-14 00:00:00

  • The complete chloroplast genome of Gleditsia sinensis and Gleditsia japonica: genome organization, comparative analysis, and development of taxon specific DNA mini-barcodes.

    abstract::Chloroplast genomes have been widely considered an informative and valuable resource for molecular marker development and phylogenetic reconstruction in plant species. This study evaluated the complete chloroplast genomes of the traditional Chinese medicine Gleditsia sinensis and G. japonica, an adulterant of the form...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-73392-7

    authors: Tan W,Gao H,Jiang W,Zhang H,Yu X,Liu E,Tian X

    更新日期:2020-10-01 00:00:00

  • Electron tomography provides a direct link between the Payne effect and the inter-particle spacing of rubber composites.

    abstract::Rubber-filler composites are a key component in the manufacture of tyres. The filler provides mechanical reinforcement and additional wear resistance to the rubber, but it in turn introduces non-linear mechanical behaviour to the material which most likely arises from interactions between the filler particles, mediate...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep07389

    authors: Staniewicz L,Vaudey T,Degrandcourt C,Couty M,Gaboriaud F,Midgley P

    更新日期:2014-12-09 00:00:00

  • Valid gene expression normalization by RT-qPCR in studies on hPDL fibroblasts with focus on orthodontic tooth movement and periodontitis.

    abstract::Meaningful, reliable and valid mRNA expression analyses by real-time quantitative PCR (RT-qPCR) can only be achieved, if suitable reference genes are chosen for normalization and if appropriate RT-qPCR quality standards are met. Human periodontal ligament (hPDL) fibroblasts play a major mediating role in orthodontic t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-15281-0

    authors: Kirschneck C,Batschkus S,Proff P,Köstler J,Spanier G,Schröder A

    更新日期:2017-11-07 00:00:00

  • Nonmonotonic particle-size-dependence of magnetoelectric coupling in strained nanosized particles of BiFeO3.

    abstract::Using high resolution powder x-ray and neutron diffraction experiments, we determined the off-centered displacement of the ions within a unit cell and magnetoelectric coupling in nanoscale BiFeO3 (≈20-200 nm). We found that both the off-centered displacement of the ions and magnetoelectric coupling exhibit nonmonotoni...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-21803-1

    authors: Goswami S,Bhattacharya D,Ghosh CK,Ghosh B,Kaushik SD,Siruguri V,Krishna PSR

    更新日期:2018-02-27 00:00:00

  • Metabolome and molecular basis for carbohydrate increase and nitrate reduction in burley tobacco seedlings by glycerol through upregulating carbon and nitrogen metabolism.

    abstract::Burley tobacco (Nicotiana Tabacum) is a chlorophyll-deficiency mutant. Nitrate is one precursor of tobacco-specific nitrosamines (TSNAs) and is largely accumulated in burley tobacco. To decrease nitrate accumulation in burley tobacco, glycerol, a polyhydric alcohol compound and physiological regulating material, was s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-31432-3

    authors: Li Y,Chang D,Yang H,Wang J,Shi H

    更新日期:2018-09-05 00:00:00

  • The effects of a genome-wide supported variant in the CACNA1C gene on cortical morphology in schizophrenia patients and healthy subjects.

    abstract::Schizophrenia is a highly heritable disorder with multiple susceptibility genes. Previously, we identified CACNA1C rs2007044 as a new risk locus for schizophrenia, with the minor allele G as risk allele. This association was recently validated by a powerful genome-wide association study. However, the underlying neural...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep34298

    authors: Zheng F,Cui Y,Yan H,Liu B,Jiang T

    更新日期:2016-09-29 00:00:00

  • Valproate inhibits mitochondrial bioenergetics and increases glycolysis in Saccharomyces cerevisiae.

    abstract::The widely used mood stabilizer valproate (VPA) causes perturbation of energy metabolism, which is implicated in both the therapeutic mechanism of action of the drug as well as drug toxicity. To gain insight into these mechanisms, we determined the effects of VPA on energy metabolism in yeast. VPA treatment increased ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-68725-5

    authors: Salsaa M,Pereira B,Liu J,Yu W,Jadhav S,Hüttemann M,Greenberg ML

    更新日期:2020-07-16 00:00:00

  • Combined Near-Infrarred Light Transillumination and Direct Digital Radiography Increases Diagnostic In Approximal Caries.

    abstract::The objective of this study was to evaluate the clinical ability of Near-Infrared Light-Transillumination (NILT) for approximal dentinal caries detection and to compare with direct digital-radiography (DDR), as well as to determine whether the combination of both techniques improves the diagnostic capacity of the lesi...

    journal_title:Scientific reports

    pub_type: 临床试验,杂志文章

    doi:10.1038/s41598-019-50850-5

    authors: Melo M,Pascual A,Camps I,Ata-Ali F,Ata-Ali J

    更新日期:2019-10-02 00:00:00

  • Anthropogenic triggering of large earthquakes.

    abstract::The physical mechanism of the anthropogenic triggering of large earthquakes on active faults is studied on the basis of experimental phenomenology, i.e., that earthquakes occur on active tectonic faults, that crustal stress values are those measured in situ and, on active faults, comply to the values of the stress dro...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06100

    authors: Mulargia F,Bizzarri A

    更新日期:2014-08-26 00:00:00

  • Stanniocalcin-1 inhibits thrombin-induced signaling and protects from bleomycin-induced lung injury.

    abstract::Thrombin-induced and proteinase-activated receptor 1 (PAR1)-mediated signaling increases ROS production, activates ERK, and promotes inflammation and fibroblast proliferation in bleomycin-induced lung injury. Stanniocalcin-1 (STC1) activates anti-oxidant pathways, inhibits inflammation and provides cytoprotection; hen...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep18117

    authors: Huang L,Zhang L,Ju H,Li Q,Pan JS,Al-Lawati Z,Sheikh-Hamad D

    更新日期:2015-12-07 00:00:00

  • The T cell receptor resides in ordered plasma membrane nanodomains that aggregate upon patching of the receptor.

    abstract::Two related models for T cell signalling initiation suggest either that T cell receptor (TCR) engagement leads to its recruitment to ordered membrane domains, often referred to as lipid rafts, where signalling molecules are enriched or that ordered TCR-containing membrane nanodomains coalesce upon TCR engagement. That...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10082

    authors: Dinic J,Riehl A,Adler J,Parmryd I

    更新日期:2015-05-08 00:00:00

  • Rates and trends of childhood acute lymphoblastic leukaemia: an epidemiology study.

    abstract::Acute lymphoblastic leukaemia (ALL) is the most common childhood cancer and has a high survival rate when properly managed. Prognosis is correlated with many factors such as age, gender, white blood cell (WBC) count, CD10, French-American-British (FAB) classification, and many others. Many of these factors are include...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-63528-0

    authors: Kakaje A,Alhalabi MM,Ghareeb A,Karam B,Mansour B,Zahra B,Hamdan O

    更新日期:2020-04-21 00:00:00

  • Persistence of a stage-structured food-web.

    abstract::Contrary to a theoretical prediction, natural communities comprise many interacting species, thereby developing complex ecosystems. Earlier theoretical studies assumed that each component species within an ecological network has a simple life history, despite the fact that the interaction partners of many species, suc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-11686-z

    authors: Mougi A

    更新日期:2017-09-08 00:00:00

  • High Plasma Lipid Levels Reduce Efficacy of Adenovirus-Mediated Gene Therapy.

    abstract::Adenoviruses are very efficient vectors for delivering therapeutic genes in preclinical and clinical trials. However, randomized controlled human trials have often been lacking clear clinically relevant results. We hypothesized that high lipid levels and specific lipoproteins could significantly decrease adenoviral tr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00376-5

    authors: Kivelä AM,Huusko J,Gurzeler E,Laine A,Dijkstra MH,Dragneva G,Andersen CB,Moestrup SK,Ylä-Herttuala S

    更新日期:2017-03-24 00:00:00

  • Prolactin and its receptor as therapeutic targets in glioblastoma multiforme.

    abstract::Although prolactin (PRL) and its receptor (PRLR) have been detected in glioblastoma multiforme (GBM), their role in its pathogenesis remains unclear. Our aim was to explore their contribution in GBM pathogenesis. We detected PRL and PRLR in all GBM cell lines tested. PRLR activation or overexpression using plasmid tra...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-55860-x

    authors: Asad AS,Nicola Candia AJ,Gonzalez N,Zuccato CF,Abt A,Orrillo SJ,Lastra Y,De Simone E,Boutillon F,Goffin V,Seilicovich A,Pisera DA,Ferraris MJ,Candolfi M

    更新日期:2019-12-20 00:00:00

  • Altered Insulin/Insulin-Like Growth Factor Signaling in a Comorbid Rat model of Ischemia and β-Amyloid Toxicity.

    abstract::Ischemic stroke and diabetes are vascular risk factors for the development of impaired memory such as dementia and/or Alzheimer's disease. Clinical studies have demonstrated that minor striatal ischemic lesions in combination with β-amyloid (Aβ) load are critical in generating cognitive deficits. These cognitive defic...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-22985-4

    authors: Amtul Z,Hill DJ,Arany EJ,Cechetto DF

    更新日期:2018-03-23 00:00:00

  • Long-Term Acclimation to Different Thermal Regimes Affects Molecular Responses to Heat Stress in a Freshwater Clam Corbicula Fluminea.

    abstract::Global climate change (GCC) can negatively affect freshwater ecosystems. However, the degree to which freshwater populations can acclimate to long-term warming and the underlying molecular mechanisms are not yet fully understood. We used the cooling water discharge (CWD) area of a power plant as a model for long-term ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep39476

    authors: Falfushynska HI,Phan T,Sokolova IM

    更新日期:2016-12-20 00:00:00

  • High-throughput Identification and Characterization of Two-dimensional Materials using Density functional theory.

    abstract::We introduce a simple criterion to identify two-dimensional (2D) materials based on the comparison between experimental lattice constants and lattice constants mainly obtained from Materials-Project (MP) density functional theory (DFT) calculation repository. Specifically, if the relative difference between the two la...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-05402-0

    authors: Choudhary K,Kalish I,Beams R,Tavazza F

    更新日期:2017-07-12 00:00:00

  • Modulation of the Mesenchymal Stem Cell Secretome Using Computer-Controlled Bioreactors: Impact on Neuronal Cell Proliferation, Survival and Differentiation.

    abstract::In recent years it has been shown that the therapeutic benefits of human mesenchymal stem/stromal cells (hMSCs) in the Central Nervous System (CNS) are mainly attributed to their secretome. The implementation of computer-controlled suspension bioreactors has shown to be a viable route for the expansion of these cells ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep27791

    authors: Teixeira FG,Panchalingam KM,Assunção-Silva R,Serra SC,Mendes-Pinheiro B,Patrício P,Jung S,Anjo SI,Manadas B,Pinto L,Sousa N,Behie LA,Salgado AJ

    更新日期:2016-06-15 00:00:00

  • Selectivity and ligand-based molecular modeling of an odorant-binding protein from the leaf beetle Ambrostoma quadriimpressum (Coleoptera: Chrysomelidae) in relation to habitat-related volatiles.

    abstract::In this study, the most abundant and antenna-specific odorant-binding protein (OBP) of the elm pest A. quadriimpressum, AquaOBP4, was expressed and purified. The selectivity of AquaOBP4 was investigated by screening against a panel of 40 habitat-relevant compounds. Based on the obtained results, a homologous model of ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-15538-8

    authors: Wang Y,Jin Y,Chen Q,Wen M,Zhao H,Duan H,Ren B

    更新日期:2017-11-13 00:00:00

  • In-depth characterization of a novel live-attenuated Mayaro virus vaccine candidate using an immunocompetent mouse model of Mayaro disease.

    abstract::Mayaro virus (MAYV) is endemic in South American countries where it is responsible for sporadic outbreaks of acute febrile illness. The hallmark of MAYV infection is a highly debilitating and chronic arthralgia. Although MAYV emergence is a potential threat, there are no specific therapies or licensed vaccine. In this...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-62084-x

    authors: Mota MTO,Costa VV,Sugimoto MA,Guimarães GF,Queiroz-Junior CM,Moreira TP,de Sousa CD,Santos FM,Queiroz VF,Passos I,Hubner J,Souza DG,Weaver SC,Teixeira MM,Nogueira ML

    更新日期:2020-03-24 00:00:00

  • Principled BCI Decoder Design and Parameter Selection Using a Feedback Control Model.

    abstract::Decoders optimized offline to reconstruct intended movements from neural recordings sometimes fail to achieve optimal performance online when they are used in closed-loop as part of an intracortical brain-computer interface (iBCI). This is because typical decoder calibration routines do not model the emergent interact...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-44166-7

    authors: Willett FR,Young DR,Murphy BA,Memberg WD,Blabe CH,Pandarinath C,Stavisky SD,Rezaii P,Saab J,Walter BL,Sweet JA,Miller JP,Henderson JM,Shenoy KV,Simeral JD,Jarosiewicz B,Hochberg LR,Kirsch RF,Bolu Ajiboye A

    更新日期:2019-06-20 00:00:00

  • The remarkable activity and stability of a highly dispersive beta-brass Cu-Zn catalyst for the production of ethylene glycol.

    abstract::Incorporation of Zn atoms into a nanosize Cu lattice is known to alter the electronic properties of Cu, improving catalytic performance in a number of industrially important reactions. However the structural influence of Zn on the Cu phase is not well studied. Here, we show that Cu nano-clusters modified with increasi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep20527

    authors: Li MM,Zheng J,Qu J,Liao F,Raine E,Kuo WC,Su SS,Po P,Yuan Y,Tsang SC

    更新日期:2016-02-09 00:00:00