Exploring Leishmania secretory proteins to design B and T cell multi-epitope subunit vaccine using immunoinformatics approach.

Abstract:

:Visceral leishmaniasis (VL) is a fatal form of leishmaniasis which affects 70 countries, worldwide. Increasing drug resistance, HIV co-infection, and poor health system require operative vaccination strategy to control the VL transmission dynamics. Therefore, a holistic approach is needed to generate T and B memory cells to mediate long-term immunity against VL infection. Consequently, immunoinformatics approach was applied to design Leishmania secretory protein based multi-epitope subunit vaccine construct consisting of B and T cell epitopes. Further, the physiochemical characterization was performed to check the aliphatic index, theoretical PI, molecular weight, and thermostable nature of vaccine construct. The allergenicity and antigenicity were also predicted to ensure the safety and immunogenic behavior of final vaccine construct. Moreover, homology modeling, followed by molecular docking and molecular dynamics simulation study was also performed to evaluate the binding affinity and stability of receptor (TLR-4) and ligand (vaccine protein) complex. This study warrants the experimental validation to ensure the immunogenicity and safety profile of presented vaccine construct which may be further helpful to control VL infection.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Khatoon N,Pandey RK,Prajapati VK

doi

10.1038/s41598-017-08842-w

subject

Has Abstract

pub_date

2017-08-15 00:00:00

pages

8285

issue

1

issn

2045-2322

pii

10.1038/s41598-017-08842-w

journal_volume

7

pub_type

杂志文章
  • Increased estrogen to androgen ratio enhances immunoglobulin levels and impairs B cell function in male mice.

    abstract::Sex steroids, such as estrogens and androgens, are important regulators of the humoral immune response. Studies in female mice have demonstrated that alteration of circulating estrogen concentration regulates antibody-mediated immunity. As males have normally little endogenous estrogen, we hypothesized that in males h...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-75059-9

    authors: Aguilar-Pimentel JA,Cho YL,Gerlini R,Calzada-Wack J,Wimmer M,Mayer-Kuckuk P,Adler T,Schmidt-Weber CB,Busch DH,Fuchs H,Gailus-Durner V,Ollert M,Hrabě de Angelis M,Ohlsson C,Poutanen M,Teperino R,Strauss L

    更新日期:2020-10-27 00:00:00

  • Hybrid Modelling of Transarterial Chemoembolisation Therapies (TACE) for Hepatocellular Carcinoma (HCC).

    abstract::We extend an agent-based multiscale model of vascular tumour growth and angiogenesis to describe transarterial chemoembolisation (TACE) therapies. The model accounts for tumour and normal cells that are both nested in a vascular system that changes its structure according to tumour-related growth factors. Oxygen promo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-65012-1

    authors: Perfahl H,Jain HV,Joshi T,Horger M,Malek N,Bitzer M,Reuss M

    更新日期:2020-06-29 00:00:00

  • Investigation of Electric Field Induced Mixing in Silicon Micro Ring Resonators.

    abstract::In this paper we present a detailed theoretical investigation of the electric field induced mixing effect, in which the up and down frequency-conversion processes are obtained by inducing an effective second order susceptibility via the periodic spatial distribution of reversed biased p-i-n junctions. The possibility ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-03485-3

    authors: De Leonardis F,Soref RA,Passaro VMN

    更新日期:2017-06-13 00:00:00

  • Expression of Arabidopsis MYB transcription factor, AtMYB111, in tobacco requires light to modulate flavonol content.

    abstract::Flavonoids, due to their pharmacological attributes, have recently become target molecules for metabolic engineering in commonly consumed food crops. Strategies including expression of single genes and gene pyramiding have provided only limited success, due principally to the highly branched and complex biosynthetic p...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep05018

    authors: Pandey A,Misra P,Bhambhani S,Bhatia C,Trivedi PK

    更新日期:2014-05-21 00:00:00

  • Fasting activates macroautophagy in neurons of Alzheimer's disease mouse model but is insufficient to degrade amyloid-beta.

    abstract::We developed a new technique to observe macroautophagy in the brain in vivo, and examined whether fasting induced macroautophagy in neurons and how the induction was different between Alzheimer's disease (AD) model and control mice. Lentivirus for EGFP-LC3 injected into the brain successfully visualized autophagosome ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep12115

    authors: Chen X,Kondo K,Motoki K,Homma H,Okazawa H

    更新日期:2015-07-14 00:00:00

  • The ability to recognize dog emotions depends on the cultural milieu in which we grow up.

    abstract::Inter-specific emotion recognition is especially adaptive when species spend a long time in close association, like dogs and humans. Here, we comprehensively studied the human ability to recognize facial expressions associated with dog emotions (hereafter, emotions). Participants were presented with pictures of dogs, ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-52938-4

    authors: Amici F,Waterman J,Kellermann CM,Karimullah K,Bräuer J

    更新日期:2019-11-11 00:00:00

  • Plasma dipeptidyl-peptidase-4 activity is associated with left ventricular systolic function in patients with ST-segment elevation myocardial infarction.

    abstract::Plasma dipeptidyl-peptidase-4 activity (DPP4a) is inversely associated with left ventricular function in patients with heart failure (HF) or diabetes. However, the association between DPP4a and left ventricular function in ST-segment elevation myocardial infarction (STEMI) patients has not been reported. We studied th...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-06514-3

    authors: Li JW,Chen YD,Liu YQ,Wang JD,Chen WR,Zhang YQ,Ma Q

    更新日期:2017-07-21 00:00:00

  • Targeted analysis of polymorphic loci from low-coverage shotgun sequence data allows accurate genotyping of HLA genes in historical human populations.

    abstract::The highly polymorphic human leukocyte antigen (HLA) plays a crucial role in adaptive immunity and is associated with various complex diseases. Accurate analysis of HLA genes using ancient DNA (aDNA) data is crucial for understanding their role in human adaptation to pathogens. Here, we describe the TARGT pipeline for...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-64312-w

    authors: Pierini F,Nutsua M,Böhme L,Özer O,Bonczarowska J,Susat J,Franke A,Nebel A,Krause-Kyora B,Lenz TL

    更新日期:2020-04-30 00:00:00

  • Directly Predicting Water Quality Criteria from Physicochemical Properties of Transition Metals.

    abstract::Transition metals are a group of elements widespread in aquatic environments that can be hazardous when concentrations exceeding threshold values. Due to insufficient data, criteria maximum concentrations (CMCs) of only seven transition metals for protecting aquatic life have been recommended by the USEPA. Hence, it i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep22515

    authors: Wang Y,Wu F,Mu Y,Zeng EY,Meng W,Zhao X,Giesy JP,Feng C,Wang P,Liao H,Chen C

    更新日期:2016-03-03 00:00:00

  • Quantitative blood flow velocity imaging using laser speckle flowmetry.

    abstract::Laser speckle flowmetry suffers from a debated quantification of the inverse relation between decorrelation time (τc) and blood flow velocity (V), i.e. 1/τc = αV. Using a modified microcirculation imager (integrated sidestream dark field - laser speckle contrast imaging [SDF-LSCI]), we experimentally investigate on th...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25258

    authors: Nadort A,Kalkman K,van Leeuwen TG,Faber DJ

    更新日期:2016-04-29 00:00:00

  • Extracting the multi-timescale activity patterns of online financial markets.

    abstract::Online financial markets can be represented as complex systems where trading dynamics can be captured and characterized at different resolutions and time scales. In this work, we develop a methodology based on non-negative tensor factorization (NTF) aimed at extracting and revealing the multi-timescale trading dynamic...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-29537-w

    authors: Kobayashi T,Sapienza A,Ferrara E

    更新日期:2018-07-25 00:00:00

  • Cross comparison and prognostic assessment of breast cancer multigene signatures in a large population-based contemporary clinical series.

    abstract::Multigene expression signatures provide a molecular subdivision of early breast cancer associated with patient outcome. A gap remains in the validation of such signatures in clinical treatment groups of patients within population-based cohorts of unselected primary breast cancer representing contemporary disease stage...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-48570-x

    authors: Vallon-Christersson J,Häkkinen J,Hegardt C,Saal LH,Larsson C,Ehinger A,Lindman H,Olofsson H,Sjöblom T,Wärnberg F,Ryden L,Loman N,Malmberg M,Borg Å,Staaf J

    更新日期:2019-08-21 00:00:00

  • Functional interplay between the transcription factors USF1 and PDX-1 and protein kinase CK2 in pancreatic β-cells.

    abstract::Glucose homeostasis is regulated by insulin, which is produced in the β-cells of the pancreas. The synthesis of insulin is controlled by several transcription factors including PDX-1, USF1 and USF2. Both, PDX-1 and USF1 were identified as substrates for protein kinase CK2. Here, we have analysed the interplay of PDX-1...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-16590-0

    authors: Spohrer S,Groß R,Nalbach L,Schwind L,Stumpf H,Menger MD,Ampofo E,Montenarh M,Götz C

    更新日期:2017-11-27 00:00:00

  • AlN formation by an Al/GaN substitution reaction.

    abstract::Aluminium nitride (AlN) is a promising semiconductor material for use as a substrate in high-power, high-frequency electronic and deep-ultraviolet optoelectronic devices. We study the feasibility of a novel AlN fabrication technique by using the Al/GaN substitution reaction method. The substitution method we propose h...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69992-y

    authors: Noorprajuda M,Ohtsuka M,Adachi M,Fukuyama H

    更新日期:2020-08-03 00:00:00

  • Subcellular localization of the sigma-1 receptor in retinal neurons - an electron microscopy study.

    abstract::The Sigma-1 receptor (S1R) is known to play a protective role in the central nervous system including the retina. A major barrier for understanding the underlying mechanism is an ambiguity of S1R subcellular localizations. We thus conducted the first electron microscopy (EM) study of S1R subcellular distribution in th...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10689

    authors: Mavlyutov TA,Epstein M,Guo LW

    更新日期:2015-06-02 00:00:00

  • Effects of grazing on photosynthetic features and soil respiration of rangelands in the Tianshan Mountains of Northwest China.

    abstract::Rangelands play a critical role in the global carbon cycle. However, the eco-physiological mechanisms associated with the effects of grazing on leaf photosynthesis and soil respiration remain poorly understood. To examine the impacts of grazing on leaf photosynthesis and soil respiration, we measured the photosyntheti...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep30087

    authors: Liu H,Zang R,Chen HY

    更新日期:2016-07-25 00:00:00

  • Bacterial diversity among the fruit bodies of ectomycorrhizal and saprophytic fungi and their corresponding hyphosphere soils.

    abstract::Macro-fungi play important roles in the soil elemental cycle in terrestrial ecosystems. Many researchers have focused on the interactions between mycorrhizal fungi and host plants, whilst comparatively few studies aim to characterise the relationships between macro-fungi and bacteria in situ. In this study, we detecte...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30120-6

    authors: Liu Y,Sun Q,Li J,Lian B

    更新日期:2018-08-03 00:00:00

  • Enhancement of carrier transport characteristic in the Sb2Se2Te topological insulators by N2 adsorption.

    abstract::The carrier transport characteristics of Sb2Se2Te topological insulators were investigated, after exposure to different levels of nitrogen gas. The magnetoresistance (MR) slope for the Sb2Se2Te crystal increased by approximately 100% at 10 K after 2-days of exposure. The Shubnikov-de Haas (SdH) oscillation amplitude i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-05369-y

    authors: Huang SM,Huang SJ,Hsu C,Wadekar PV,Yan YJ,Yu SH,Chou M

    更新日期:2017-07-11 00:00:00

  • The invasiveness of human cervical cancer associated to the function of NaV1.6 channels is mediated by MMP-2 activity.

    abstract::Voltage-gated sodium (NaV) channels have been related with cell migration and invasiveness in human cancers. We previously reported the contribution of NaV1.6 channels activity with the invasion capacity of cervical cancer (CeCa) positive to Human Papilloma Virus type 16 (HPV16), which accounts for 50% of all CeCa cas...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-31364-y

    authors: Lopez-Charcas O,Espinosa AM,Alfaro A,Herrera-Carrillo Z,Ramirez-Cordero BE,Cortes-Reynosa P,Perez Salazar E,Berumen J,Gomora JC

    更新日期:2018-08-29 00:00:00

  • HIV burden in men who have sex with men: a prospective cohort study 2007-2012.

    abstract::We conducted a prospective cohort study among HIV-negative MSM aged 18 years or older between 2007 and 2012 in Beijing, China to measure the rates of incident HIV and identify risk factors for infection. Among 5,800 participants evaluated at enrollment, we identified 486 prevalent cases of HIV (8.4%). Among the 3,625 ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11205

    authors: Jia Z,Huang X,Wu H,Zhang T,Li N,Ding P,Sun Y,Liu Z,Wei F,Zhang H,Jiao Y,Ji Y,Zhang Y,Guo C,Li W,Mou D,Xia W,Li Z,Chen D,Yan H,Chen X,Zhao J,Meyers K,Cohen T,Mayer K,Salomon JA,Lu Z,Dye C

    更新日期:2015-07-02 00:00:00

  • How to Regenerate and Protect Desert Riparian Populus euphratica Forest in Arid Areas.

    abstract::We found that the most suitable flooding disturbance model for regenerating Populus euphratica forest was two to three times per year with a duration of 15-20 days and an intensity of 25-30 m(3)/s. The flooding should take place during the seed emergence to young tree growth stages, and should be based on flooding exp...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15418

    authors: Ling H,Zhang P,Xu H,Zhao X

    更新日期:2015-10-20 00:00:00

  • Different conformations of the German shepherd dog breed affect its posture and movement.

    abstract::The conformation of the German shepherd dog (GSD) varies considerably within the breed. These differences may result in large variation in the movement and limb loading and undesirable consequences to their musculoskeletal health. This study aimed to investigate the relationship between conformation and biomechanical ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-73550-x

    authors: Humphries A,Shaheen AF,Gómez Álvarez CB

    更新日期:2020-10-15 00:00:00

  • Publisher Correction: Unbalanced Expression of ICOS and PD-1 in Patients with Neuromyelitis Optica Spectrum Disorder.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-020-64342-4

    authors: Xue Q,Li X,Gu Y,Wang X,Wang M,Tian J,Duan X,Gao H,Ji X,Yan X,Dong W,Fang Q,Zhang X

    更新日期:2020-05-08 00:00:00

  • Hepatitis B virus X protein is capable of down-regulating protein level of host antiviral protein APOBEC3G.

    abstract::The apolipoprotein B mRNA editing catalytic polypeptide-like (APOBEC) family proteins bind RNA and single-stranded DNA, and create C-to-U base modifications through cytidine deaminase activity. APOBEC3G restricts human immunodeficiency virus 1 (HIV-1) infection by creating hypermutations in proviral DNA, while HIV-1-e...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40783

    authors: Chen R,Zhao X,Wang Y,Xie Y,Liu J

    更新日期:2017-01-18 00:00:00

  • Dynamic interplay of multidrug transporters with TolC for isoprenol tolerance in Escherichia coli.

    abstract::Engineering of efflux pumps is a promising way to improve host's tolerance to biofuels such as medium-chain alcohols (CmOHs); however, this strategy is restricted by poor understanding of the efflux pumps engaged in extrusion of solvents. In this study, several Escherichia coli mutants of multidrug transporters were e...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep16505

    authors: Wang C,Yang L,Shah AA,Choi ES,Kim SW

    更新日期:2015-11-13 00:00:00

  • Alteration of contrast enhanced ultrasound (CEUS) of hepatocellular carcinoma in patients with cirrhosis and transjugular intrahepatic portosystemic shunt (TIPS).

    abstract::Transjugular intrahepatic portosystemic shunt (TIPS) can treat portal hypertensive complications and modifies hepatic hemodynamics. Modification of liver perfusion can alter contrast enhancement dynamics of liver nodules. This study investigated the diagnostic performance of contrast-enhanced ultrasound (CEUS) to diag...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-77801-9

    authors: Chang J,Dumitrache A,Böhling N,Abu-Omar J,Meyer C,Strobel D,Luetkens J,Luu AM,Rockstroh J,Strassburg CP,Trebicka J,Gonzalez-Carmona MA,Marinova M,Praktiknjo M

    更新日期:2020-11-26 00:00:00

  • Pro-invasive stimuli and the interacting protein Hsp70 favour the route of alpha-enolase to the cell surface.

    abstract::Cell surface expression of alpha-enolase, a glycolytic enzyme displaying moonlighting activities, has been shown to contribute to the motility and invasiveness of cancer cells through the protein non-enzymatic function of binding plasminogen and enhancing plasmin formation. Although a few recent records indicate the i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-04185-8

    authors: Perconti G,Maranto C,Romancino DP,Rubino P,Feo S,Bongiovanni A,Giallongo A

    更新日期:2017-06-19 00:00:00

  • Self-Heating and Failure in Scalable Graphene Devices.

    abstract::Self-heating induced failure of graphene devices synthesized from both chemical vapor deposition (CVD) and epitaxial means is compared using a combination of infrared thermography and Raman imaging. Despite a larger thermal resistance, CVD devices dissipate >3x the amount of power before failure than their epitaxial c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep26457

    authors: Beechem TE,Shaffer RA,Nogan J,Ohta T,Hamilton AB,McDonald AE,Howell SW

    更新日期:2016-06-09 00:00:00

  • DNA methylation of the INSR gene as a mediator of the association between prenatal exposure to famine and adulthood waist circumference.

    abstract::The aims of this study were to explore whether DNA methylation at INSR and IGF2 mediated the association of prenatal exposure to the Chinese great famine with adulthood waist circumference (WC) and BMI. A total of 235 subjects were selected into the present study from severely affected province and a neighbor province...

    journal_title:Scientific reports

    pub_type: 历史文章,杂志文章

    doi:10.1038/s41598-020-69120-w

    authors: Wang Z,Song J,Li C,Li Y,Shen L,Dong B,Zou Z,Ma J

    更新日期:2020-07-22 00:00:00

  • Differentially expressed microRNAs between cattleyak and yak testis.

    abstract::Cattleyak are interspecific hybrids between cattle and yak, exhibiting the same prominent adaptability as yak and much higher performances than yak. However, male infertility of cattleyak resulted from spermatogenic arrest has greatly restricted their effective utilization in yak breeding. In past decades, much work h...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-18607-0

    authors: Xu C,Wu S,Zhao W,Mipam T,Liu J,Liu W,Yi C,Shah MA,Yu S,Cai X

    更新日期:2018-01-12 00:00:00