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A temporal banding approach for consistent taxonomic ranking above the species level.

Abstract：

:Comparable taxonomic ranks within clades can facilitate more consistent classifications and objective comparisons among taxa. Here we use a temporal approach to identify taxonomic ranks. This is an extension of the temporal banding approach including a Temporal Error Score that finds an objective cut-off for each taxonomic rank using information for the current classification. We illustrate this method using a data set of the lichenized fungal family Parmeliaceae. To assess its performance, we simulated the effect of taxon sampling and compared our method with the other temporal banding method. For our sampled phylogeny, 11 of the 12 included families remained intact and 55 genera were confirmed, whereas 32 genera were lumped and 15 genera were split. Taxon sampling impacted the method at the genus level, whereas yielded only insignificant changes at the family level. The other available temporal approach also gives a similar cutoff point to our method. Our approach to identify taxonomic ranks enables taxonomists to revise and propose classifications on an objective basis, changing ranks of clades only when inconsistent with most taxa in a phylogenetic tree. An R script to find the time point with the minimal temporal error is provided.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Kraichak E,Crespo A,Divakar PK,Leavitt SD,Lumbsch HT

doi

10.1038/s41598-017-02477-7

subject

Has Abstract

pub_date

2017-05-23 00:00:00

pages

2297

issue

1

issn

2045-2322

pii

10.1038/s41598-017-02477-7

journal_volume

7

pub_type

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