Human Holliday junction resolvase GEN1 uses a chromodomain for efficient DNA recognition and cleavage.

Abstract:

:Holliday junctions (HJs) are key DNA intermediates in homologous recombination. They link homologous DNA strands and have to be faithfully removed for proper DNA segregation and genome integrity. Here, we present the crystal structure of human HJ resolvase GEN1 complexed with DNA at 3.0 Å resolution. The GEN1 core is similar to other Rad2/XPG nucleases. However, unlike other members of the superfamily, GEN1 contains a chromodomain as an additional DNA interaction site. Chromodomains are known for their chromatin-targeting function in chromatin remodelers and histone(de)acetylases but they have not previously been found in nucleases. The GEN1 chromodomain directly contacts DNA and its truncation severely hampers GEN1's catalytic activity. Structure-guided mutations in vitro and in vivo in yeast validated our mechanistic findings. Our study provides the missing structure in the Rad2/XPG family and insights how a well-conserved nuclease core acquires versatility in recognizing diverse substrates for DNA repair and maintenance.

journal_name

Elife

journal_title

eLife

authors

Lee SH,Princz LN,Klügel MF,Habermann B,Pfander B,Biertümpfel C

doi

10.7554/eLife.12256

subject

Has Abstract

pub_date

2015-12-18 00:00:00

issn

2050-084X

journal_volume

4

pub_type

杂志文章

相关文献

eLife文献大全
  • Three rules govern thalamocortical connectivity of fast-spike inhibitory interneurons in the visual cortex.

    abstract::Some cortical neurons receive highly selective thalamocortical (TC) input, but others do not. Here, we examine connectivity of single thalamic neurons (lateral geniculate nucleus, LGN) onto putative fast-spike inhibitory interneurons in layer 4 of rabbit visual cortex. We show that three 'rules' regulate this connecti...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.60102

    authors: Bereshpolova Y,Hei X,Alonso JM,Swadlow HA

    更新日期:2020-12-08 00:00:00

  • An ancient Pygo-dependent Wnt enhanceosome integrated by Chip/LDB-SSDP.

    abstract::TCF/LEF factors are ancient context-dependent enhancer-binding proteins that are activated by β-catenin following Wnt signaling. They control embryonic development and adult stem cell compartments, and their dysregulation often causes cancer. β-catenin-dependent transcription relies on the NPF motif of Pygo proteins. ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.09073

    authors: Fiedler M,Graeb M,Mieszczanek J,Rutherford TJ,Johnson CM,Bienz M

    更新日期:2015-08-27 00:00:00

  • Cell-type-specific control of basolateral amygdala neuronal circuits via entorhinal cortex-driven feedforward inhibition.

    abstract::The basolateral amygdala (BLA) plays a vital role in associating sensory stimuli with salient valence information. Excitatory principal neurons (PNs) undergo plastic changes to encode this association; however, local BLA inhibitory interneurons (INs) gate PN plasticity via feedforward inhibition (FFI). Despite literat...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.50601

    authors: Guthman EM,Garcia JD,Ma M,Chu P,Baca SM,Smith KR,Restrepo D,Huntsman MM

    更新日期:2020-01-09 00:00:00

  • Multifactorial processes underlie parallel opsin loss in neotropical bats.

    abstract::The loss of previously adaptive traits is typically linked to relaxation in selection, yet the molecular steps leading to such repeated losses are rarely known. Molecular studies of loss have tended to focus on gene sequences alone, but overlooking other aspects of protein expression might underestimate phenotypic div...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.37412

    authors: Sadier A,Davies KT,Yohe LR,Yun K,Donat P,Hedrick BP,Dumont ER,Dávalos LM,Rossiter SJ,Sears KE

    更新日期:2018-12-18 00:00:00

  • Requirement of Smurf-mediated endocytosis of Patched1 in sonic hedgehog signal reception.

    abstract::Cell surface reception of Sonic hedgehog (Shh) must ensure that the graded morphogenic signal is interpreted accordingly in neighboring cells to specify tissue patterns during development. Here, we report endocytic sorting signals for the receptor Patched1 (Ptch1), comprising two 'PPXY' motifs, that direct it to degra...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.02555

    authors: Yue S,Tang LY,Tang Y,Tang Y,Shen QH,Ding J,Chen Y,Zhang Z,Yu TT,Zhang YE,Cheng SY

    更新日期:2014-06-12 00:00:00

  • Mutual inhibition among postmitotic neurons regulates robustness of brain wiring in Drosophila.

    abstract::Brain connectivity maps display a delicate balance between individual variation and stereotypy, suggesting the existence of dedicated mechanisms that simultaneously permit and limit individual variation. We show that during the development of the Drosophila central nervous system, mutual inhibition among groups of nei...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.00337

    authors: Langen M,Koch M,Yan J,De Geest N,Erfurth ML,Pfeiffer BD,Schmucker D,Moreau Y,Hassan BA

    更新日期:2013-03-05 00:00:00

  • MicroRNAs down-regulate homologous recombination in the G1 phase of cycling cells to maintain genomic stability.

    abstract::Homologous recombination (HR)-mediated repair of DNA double-strand break (DSB)s is restricted to the post-replicative phases of the cell cycle. Initiation of HR in the G1 phase blocks non-homologous end joining (NHEJ) impairing DSB repair. Completion of HR in G1 cells can lead to the loss-of-heterozygosity (LOH), whic...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.02445

    authors: Choi YE,Pan Y,Park E,Konstantinopoulos P,De S,D'Andrea A,Chowdhury D

    更新日期:2014-04-30 00:00:00

  • Early life adversity decreases pre-adolescent fear expression by accelerating amygdala PV cell development.

    abstract::Early life adversity (ELA) is associated with increased risk for stress-related disorders later in life. The link between ELA and risk for psychopathology is well established but the developmental mechanisms remain unclear. Using a mouse model of resource insecurity, limited bedding (LB), we tested the effects of LB o...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.55263

    authors: Manzano Nieves G,Bravo M,Baskoylu S,Bath KG

    更新日期:2020-07-21 00:00:00

  • Mapping residual transmission for malaria elimination.

    abstract::Eliminating malaria from a defined region involves draining the endemic parasite reservoir and minimizing local malaria transmission around imported malaria infections . In the last phases of malaria elimination, as universal interventions reap diminishing marginal returns, national resources must become increasingly ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.09520

    authors: Reiner RC,Le Menach A,Kunene S,Ntshalintshali N,Hsiang MS,Perkins TA,Greenhouse B,Tatem AJ,Cohen JM,Smith DL

    更新日期:2015-12-29 00:00:00

  • Circulating myeloid cells invade the central nervous system to mediate cachexia during pancreatic cancer.

    abstract::Weight loss and anorexia are common symptoms in cancer patients that occur prior to initiation of cancer therapy. Inflammation in the brain is a driver of these symptoms, yet cellular sources of neuroinflammation during malignancy are unknown. In a mouse model of pancreatic ductal adenocarcinoma (PDAC), we observed ea...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.54095

    authors: Burfeind KG,Zhu X,Norgard MA,Levasseur PR,Huisman C,Buenafe AC,Olson B,Michaelis KA,Torres ER,Jeng S,McWeeney S,Raber J,Marks DL

    更新日期:2020-05-11 00:00:00

  • Decoding WW domain tandem-mediated target recognitions in tissue growth and cell polarity.

    abstract::WW domain tandem-containing proteins such as KIBRA, YAP, and MAGI play critical roles in cell growth and polarity via binding to and positioning target proteins in specific subcellular regions. An immense disparity exists between promiscuity of WW domain-mediated target bindings and specific roles of WW domain protein...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.49439

    authors: Lin Z,Yang Z,Xie R,Ji Z,Guan K,Zhang M

    更新日期:2019-09-05 00:00:00

  • Supervised mutational signatures for obesity and other tissue-specific etiological factors in cancer.

    abstract::Determining the etiologic basis of the mutations that are responsible for cancer is one of the fundamental challenges in modern cancer research. Different mutational processes induce different types of DNA mutations, providing 'mutational signatures' that have led to key insights into cancer etiology. The most widely ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.61082

    authors: Afsari B,Kuo A,Zhang Y,Li L,Lahouel K,Danilova L,Favorov A,Rosenquist TA,Grollman AP,Kinzler KW,Cope L,Vogelstein B,Tomasetti C

    更新日期:2021-01-25 00:00:00

  • Host proteostasis modulates influenza evolution.

    abstract::Predicting and constraining RNA virus evolution require understanding the molecular factors that define the mutational landscape accessible to these pathogens. RNA viruses typically have high mutation rates, resulting in frequent production of protein variants with compromised biophysical properties. Their evolution i...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.28652

    authors: Phillips AM,Gonzalez LO,Nekongo EE,Ponomarenko AI,McHugh SM,Butty VL,Levine SS,Lin YS,Mirny LA,Shoulders MD

    更新日期:2017-09-26 00:00:00

  • Gdf3 is required for robust Nodal signaling during germ layer formation and left-right patterning.

    abstract::Vertebrate embryonic patterning depends on signaling from Nodal, a TGFβ superfamily member. There are three Nodal orthologs in zebrafish; southpaw directs left-right asymmetries, while squint and cyclops function earlier to pattern mesendoderm. TGFβ member Vg1 is implicated in mesoderm formation but the role of the ze...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.28635

    authors: Pelliccia JL,Jindal GA,Burdine RD

    更新日期:2017-11-15 00:00:00

  • The RNF168 paralog RNF169 defines a new class of ubiquitylated histone reader involved in the response to DNA damage.

    abstract::Site-specific histone ubiquitylation plays a central role in orchestrating the response to DNA double-strand breaks (DSBs). DSBs elicit a cascade of events controlled by the ubiquitin ligase RNF168, which promotes the accumulation of repair factors such as 53BP1 and BRCA1 on the chromatin flanking the break site. RNF1...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.23872

    authors: Kitevski-LeBlanc J,Fradet-Turcotte A,Kukic P,Wilson MD,Portella G,Yuwen T,Panier S,Duan S,Canny MD,van Ingen H,Arrowsmith CH,Rubinstein JL,Vendruscolo M,Durocher D,Kay LE

    更新日期:2017-04-13 00:00:00

  • Viral genome structures are optimal for capsid assembly.

    abstract::Understanding how virus capsids assemble around their nucleic acid (NA) genomes could promote efforts to block viral propagation or to reengineer capsids for gene therapy applications. We develop a coarse-grained model of capsid proteins and NAs with which we investigate assembly dynamics and thermodynamics. In contra...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.00632

    authors: Perlmutter JD,Qiao C,Hagan MF

    更新日期:2013-06-14 00:00:00

  • Presynaptic PTPσ regulates postsynaptic NMDA receptor function through direct adhesion-independent mechanisms.

    abstract::Synaptic adhesion molecules regulate synapse development and function. However, whether and how presynaptic adhesion molecules regulate postsynaptic NMDAR function remains largely unclear. Presynaptic LAR family receptor tyrosine phosphatases (LAR-RPTPs) regulate synapse development through mechanisms that include tra...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.54224

    authors: Kim K,Shin W,Kang M,Lee S,Kim D,Kang R,Jung Y,Cho Y,Yang E,Kim H,Bae YC,Kim E

    更新日期:2020-03-06 00:00:00

  • Autophagic cell death is dependent on lysosomal membrane permeability through Bax and Bak.

    abstract::Cells deficient in the pro-death Bcl-2 family members Bax and Bak are known to be resistant to apoptotic cell death, and previous we have shown that these two effectors are also needed for mitochondrial-dependent cellular necrosis (Karch et al., 2013). Here we show that mouse embryonic fibroblasts deficient in Bax/Bak...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.30543

    authors: Karch J,Schips TG,Maliken BD,Brody MJ,Sargent MA,Kanisicak O,Molkentin JD

    更新日期:2017-11-17 00:00:00

  • Shearing in flow environment promotes evolution of social behavior in microbial populations.

    abstract::How producers of public goods persist in microbial communities is a major question in evolutionary biology. Cooperation is evolutionarily unstable, since cheating strains can reproduce quicker and take over. Spatial structure has been shown to be a robust mechanism for the evolution of cooperation. Here we study how s...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.34862

    authors: Uppal G,Vural DC

    更新日期:2018-05-22 00:00:00

  • A year in the life of eLife.

    abstract::Improving the peer review process, overcoming the limitations of print journals and providing open access to the very best work in the life and biomedical sciences are three highlights of our first year. ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.01516

    authors: Schekman R,Watt FM,Weigel D

    更新日期:2013-10-15 00:00:00

  • Protein aggregates are associated with replicative aging without compromising protein quality control.

    abstract::Differentiation of cellular lineages is facilitated by asymmetric segregation of fate determinants between dividing cells. In budding yeast, various aging factors segregate to the aging (mother)-lineage, with poorly understood consequences. In this study, we show that yeast mother cells form a protein aggregate during...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.06197

    authors: Saarikangas J,Barral Y

    更新日期:2015-11-06 00:00:00

  • Surface color and predictability determine contextual modulation of V1 firing and gamma oscillations.

    abstract::The integration of direct bottom-up inputs with contextual information is a core feature of neocortical circuits. In area V1, neurons may reduce their firing rates when their receptive field input can be predicted by spatial context. Gamma-synchronized (30-80 Hz) firing may provide a complementary signal to rates, ref...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.42101

    authors: Peter A,Uran C,Klon-Lipok J,Roese R,van Stijn S,Barnes W,Dowdall JR,Singer W,Fries P,Vinck M

    更新日期:2019-02-04 00:00:00

  • Regional complexity in enteric neuron wiring reflects diversity of motility patterns in the mouse large intestine.

    abstract::The enteric nervous system controls a variety of gastrointestinal functions including intestinal motility. The minimal neuronal circuit necessary to direct peristalsis is well-characterized but several intestinal regions display also other motility patterns for which the underlying circuits and connectivity schemes th...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.42914

    authors: Li Z,Hao MM,Van den Haute C,Baekelandt V,Boesmans W,Vanden Berghe P

    更新日期:2019-02-12 00:00:00

  • Pathogen effectors and plant immunity determine specialization of the blast fungus to rice subspecies.

    abstract::Understanding how fungi specialize on their plant host is crucial for developing sustainable disease control. A traditional, centuries-old rice agro-system of the Yuanyang terraces was used as a model to show that virulence effectors of the rice blast fungus Magnaporthe oryzaeh play a key role in its specialization on...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.19377

    authors: Liao J,Huang H,Meusnier I,Adreit H,Ducasse A,Bonnot F,Pan L,He X,Kroj T,Fournier E,Tharreau D,Gladieux P,Morel JB

    更新日期:2016-12-23 00:00:00

  • Everyone wins.

    abstract::Aeromonas bacteria living in the gut of zebrafish produce a specific molecule to pacify the immune system of their host. ...

    journal_title:eLife

    pub_type: 评论,杂志文章

    doi:10.7554/eLife.42676

    authors: Matos RC,Leulier F

    更新日期:2018-11-06 00:00:00

  • Importin-9 wraps around the H2A-H2B core to act as nuclear importer and histone chaperone.

    abstract::We report the crystal structure of nuclear import receptor Importin-9 bound to its cargo, the histones H2A-H2B. Importin-9 wraps around the core, globular region of H2A-H2B to form an extensive interface. The nature of this interface coupled with quantitative analysis of deletion mutants of H2A-H2B suggests that the N...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.43630

    authors: Padavannil A,Sarkar P,Kim SJ,Cagatay T,Jiou J,Brautigam CA,Tomchick DR,Sali A,D'Arcy S,Chook YM

    更新日期:2019-03-11 00:00:00

  • A randomized feasibility trial comparing four antimalarial drug regimens to induce Plasmodium falciparum gametocytemia in the controlled human malaria infection model.

    abstract:Background:Malaria elimination strategies require a thorough understanding of parasite transmission from human to mosquito. A clinical model to induce gametocytes to understand their dynamics and evaluate transmission-blocking interventions (TBI) is currently unavailable. Here, we explore the use of the well-establishe...

    journal_title:eLife

    pub_type: 杂志文章,随机对照试验

    doi:10.7554/eLife.31549

    authors: Reuling IJ,van de Schans LA,Coffeng LE,Lanke K,Meerstein-Kessel L,Graumans W,van Gemert GJ,Teelen K,Siebelink-Stoter R,van de Vegte-Bolmer M,de Mast Q,van der Ven AJ,Ivinson K,Hermsen CC,de Vlas S,Bradley J,Collins KA,O

    更新日期:2018-02-27 00:00:00

  • Inactivation of oncogenic cAMP-specific phosphodiesterase 4D by miR-139-5p in response to p53 activation.

    abstract::Increasing evidence highlights the important roles of microRNAs in mediating p53's tumor suppression functions. Here, we report miR-139-5p as another new p53 microRNA target. p53 induced the transcription of miR-139-5p, which in turn suppressed the protein levels of phosphodiesterase 4D (PDE4D), an oncogenic protein i...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.15978

    authors: Cao B,Wang K,Liao JM,Zhou X,Liao P,Zeng SX,He M,Chen L,He Y,Li W,Lu H

    更新日期:2016-07-07 00:00:00

  • The single-cell eQTLGen consortium.

    abstract::In recent years, functional genomics approaches combining genetic information with bulk RNA-sequencing data have identified the downstream expression effects of disease-associated genetic risk factors through so-called expression quantitative trait locus (eQTL) analysis. Single-cell RNA-sequencing creates enormous opp...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.52155

    authors: van der Wijst M,de Vries DH,Groot HE,Trynka G,Hon CC,Bonder MJ,Stegle O,Nawijn MC,Idaghdour Y,van der Harst P,Ye CJ,Powell J,Theis FJ,Mahfouz A,Heinig M,Franke L

    更新日期:2020-03-09 00:00:00

  • Glucocorticoid receptor-mediated amygdalar metaplasticity underlies adaptive modulation of fear memory by stress.

    abstract::Glucocorticoid receptor (GR) is crucial for signaling mediated by stress-induced high levels of glucocorticoids. The lateral nucleus of the amygdala (LA) is a key structure underlying auditory-cued fear conditioning. Here, we demonstrate that genetic disruption of GR in the LA (LAGRKO) resulted in an auditory-cued fea...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.34135

    authors: Inoue R,Abdou K,Hayashi-Tanaka A,Muramatsu SI,Mino K,Inokuchi K,Mori H

    更新日期:2018-06-26 00:00:00