Host proteostasis modulates influenza evolution.

Abstract:

:Predicting and constraining RNA virus evolution require understanding the molecular factors that define the mutational landscape accessible to these pathogens. RNA viruses typically have high mutation rates, resulting in frequent production of protein variants with compromised biophysical properties. Their evolution is necessarily constrained by the consequent challenge to protein folding and function. We hypothesized that host proteostasis mechanisms may be significant determinants of the fitness of viral protein variants, serving as a critical force shaping viral evolution. Here, we test that hypothesis by propagating influenza in host cells displaying chemically-controlled, divergent proteostasis environments. We find that both the nature of selection on the influenza genome and the accessibility of specific mutational trajectories are significantly impacted by host proteostasis. These findings provide new insights into features of host-pathogen interactions that shape viral evolution, and into the potential design of host proteostasis-targeted antiviral therapeutics that are refractory to resistance.

journal_name

Elife

journal_title

eLife

authors

Phillips AM,Gonzalez LO,Nekongo EE,Ponomarenko AI,McHugh SM,Butty VL,Levine SS,Lin YS,Mirny LA,Shoulders MD

doi

10.7554/eLife.28652

subject

Has Abstract

pub_date

2017-09-26 00:00:00

issn

2050-084X

journal_volume

6

pub_type

杂志文章

相关文献

eLife文献大全
  • Structural basis of nucleic-acid recognition and double-strand unwinding by the essential neuronal protein Pur-alpha.

    abstract::The neuronal DNA-/RNA-binding protein Pur-alpha is a transcription regulator and core factor for mRNA localization. Pur-alpha-deficient mice die after birth with pleiotropic neuronal defects. Here, we report the crystal structure of the DNA-/RNA-binding domain of Pur-alpha in complex with ssDNA. It reveals base-specif...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.11297

    authors: Weber J,Bao H,Hartlmüller C,Wang Z,Windhager A,Janowski R,Madl T,Jin P,Niessing D

    更新日期:2016-01-08 00:00:00

  • The structure of the COPII transport-vesicle coat assembled on membranes.

    abstract::Coat protein complex II (COPII) mediates formation of the membrane vesicles that export newly synthesised proteins from the endoplasmic reticulum. The inner COPII proteins bind to cargo and membrane, linking them to the outer COPII components that form a cage around the vesicle. Regulated flexibility in coat architect...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.00951

    authors: Zanetti G,Prinz S,Daum S,Meister A,Schekman R,Bacia K,Briggs JA

    更新日期:2013-09-17 00:00:00

  • Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation.

    abstract::Variation in the presence or absence of transposable elements (TEs) is a major source of genetic variation between individuals. Here, we identified 23,095 TE presence/absence variants between 216 Arabidopsis accessions. Most TE variants were rare, and we find these rare variants associated with local extremes of gene ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.20777

    authors: Stuart T,Eichten SR,Cahn J,Karpievitch YV,Borevitz JO,Lister R

    更新日期:2016-12-02 00:00:00

  • Pervasive duplication of tumor suppressors in Afrotherians during the evolution of large bodies and reduced cancer risk.

    abstract::The risk of developing cancer is correlated with body size and lifespan within species. Between species, however, there is no correlation between cancer and either body size or lifespan, indicating that large, long-lived species have evolved enhanced cancer protection mechanisms. Elephants and their relatives (Probosc...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.65041

    authors: Vazquez JM,Lynch VJ

    更新日期:2021-01-29 00:00:00

  • Plasmodium P36 determines host cell receptor usage during sporozoite invasion.

    abstract::Plasmodium sporozoites, the mosquito-transmitted forms of the malaria parasite, first infect the liver for an initial round of replication before the emergence of pathogenic blood stages. Sporozoites represent attractive targets for antimalarial preventive strategies, yet the mechanisms of parasite entry into hepatocy...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.25903

    authors: Manzoni G,Marinach C,Topçu S,Briquet S,Grand M,Tolle M,Gransagne M,Lescar J,Andolina C,Franetich JF,Zeisel MB,Huby T,Rubinstein E,Snounou G,Mazier D,Nosten F,Baumert TF,Silvie O

    更新日期:2017-05-16 00:00:00

  • Perinatal hormones favor CC17 group B Streptococcus intestinal translocation through M cells and hypervirulence in neonates.

    abstract::Group B Streptococcus (GBS) is the leading cause of invasive bacterial neonatal infections. Late-onset diseases (LOD) occur between 7 and 89 days of life and are largely due to the CC17 GBS hypervirulent clone. We studied the impact of estradiol (E2) and progesterone (P4), which impregnate the fetus during pregnancy, ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.48772

    authors: Hays C,Touak G,Bouaboud A,Fouet A,Guignot J,Poyart C,Tazi A

    更新日期:2019-11-11 00:00:00

  • Lipids and ions traverse the membrane by the same physical pathway in the nhTMEM16 scramblase.

    abstract::From bacteria to mammals, different phospholipid species are segregated between the inner and outer leaflets of the plasma membrane by ATP-dependent lipid transporters. Disruption of this asymmetry by ATP-independent phospholipid scrambling is important in cellular signaling, but its mechanism remains incompletely und...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.28671

    authors: Jiang T,Yu K,Hartzell HC,Tajkhorshid E

    更新日期:2017-09-16 00:00:00

  • Phenotypic complementation of genetic immunodeficiency by chronic herpesvirus infection.

    abstract::Variation in the presentation of hereditary immunodeficiencies may be explained by genetic or environmental factors. Patients with mutations in HOIL1 (RBCK1) present with amylopectinosis-associated myopathy with or without hyper-inflammation and immunodeficiency. We report that barrier-raised HOIL-1-deficient mice exh...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.04494

    authors: MacDuff DA,Reese TA,Kimmey JM,Weiss LA,Song C,Zhang X,Kambal A,Duan E,Carrero JA,Boisson B,Laplantine E,Israel A,Picard C,Colonna M,Edelson BT,Sibley LD,Stallings CL,Casanova JL,Iwai K,Virgin HW

    更新日期:2015-01-20 00:00:00

  • DNA damage shifts circadian clock time via Hausp-dependent Cry1 stabilization.

    abstract::The circadian transcriptional repressors cryptochrome 1 (Cry1) and 2 (Cry2) evolved from photolyases, bacterial light-activated DNA repair enzymes. In this study, we report that while they have lost DNA repair activity, Cry1/2 adapted to protect genomic integrity by responding to DNA damage through posttranslational m...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.04883

    authors: Papp SJ,Huber AL,Jordan SD,Kriebs A,Nguyen M,Moresco JJ,Yates JR,Lamia KA

    更新日期:2015-03-10 00:00:00

  • Single-cell RNA-sequencing reveals distinct patterns of cell state heterogeneity in mouse models of breast cancer.

    abstract::Breast cancer stem cells (BCSCs) contribute to intra-tumoral heterogeneity and therapeutic resistance. However, the binary concept of universal BCSCs co-existing with bulk tumor cells is over-simplified. Through single-cell RNA-sequencing, we found that Neu, PyMT and BRCA1-null mammary tumors each corresponded to a sp...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.58810

    authors: Yeo SK,Zhu X,Okamoto T,Hao M,Wang C,Lu P,Lu LJ,Guan JL

    更新日期:2020-08-25 00:00:00

  • Retinal stem cells modulate proliferative parameters to coordinate post-embryonic morphogenesis in the eye of fish.

    abstract::Combining clonal analysis with a computational agent based model, we investigate how tissue-specific stem cells for neural retina (NR) and retinal pigmented epithelium (RPE) of the teleost medaka (Oryzias latipes) coordinate their growth rates. NR cell division timing is less variable, consistent with an upstream role...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.42646

    authors: Tsingos E,Höckendorf B,Sütterlin T,Kirchmaier S,Grabe N,Centanin L,Wittbrodt J

    更新日期:2019-03-26 00:00:00

  • MicroRNAs down-regulate homologous recombination in the G1 phase of cycling cells to maintain genomic stability.

    abstract::Homologous recombination (HR)-mediated repair of DNA double-strand break (DSB)s is restricted to the post-replicative phases of the cell cycle. Initiation of HR in the G1 phase blocks non-homologous end joining (NHEJ) impairing DSB repair. Completion of HR in G1 cells can lead to the loss-of-heterozygosity (LOH), whic...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.02445

    authors: Choi YE,Pan Y,Park E,Konstantinopoulos P,De S,D'Andrea A,Chowdhury D

    更新日期:2014-04-30 00:00:00

  • Mechanism of cargo-directed Atg8 conjugation during selective autophagy.

    abstract::Selective autophagy is mediated by cargo receptors that link the cargo to the isolation membrane via interactions with Atg8 proteins. Atg8 proteins are localized to the membrane in an ubiquitin-like conjugation reaction, but how this conjugation is coupled to the presence of the cargo is unclear. Here we show that the...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.18544

    authors: Fracchiolla D,Sawa-Makarska J,Zens B,Ruiter A,Zaffagnini G,Brezovich A,Romanov J,Runggatscher K,Kraft C,Zagrovic B,Martens S

    更新日期:2016-11-23 00:00:00

  • Regulation of food intake by mechanosensory ion channels in enteric neurons.

    abstract::Regulation of food intake is fundamental to energy homeostasis in animals. The contribution of non-nutritive and metabolic signals in regulating feeding is unclear. Here we show that enteric neurons play a major role in regulating feeding through specialized mechanosensory ion channels in Drosophila. Modulating activi...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.04402

    authors: Olds WH,Xu T

    更新日期:2014-10-06 00:00:00

  • Uncoupling apical constriction from tissue invagination.

    abstract::Apical constriction is a widely utilized cell shape change linked to folding, bending and invagination of polarized epithelia. It remains unclear how apical constriction is regulated spatiotemporally during tissue invagination and how this cellular process contributes to tube formation in different developmental conte...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.22235

    authors: Chung S,Kim S,Andrew DJ

    更新日期:2017-03-06 00:00:00

  • PROP1 triggers epithelial-mesenchymal transition-like process in pituitary stem cells.

    abstract::Mutations in PROP1 are the most common cause of hypopituitarism in humans; therefore, unraveling its mechanism of action is highly relevant from a therapeutic perspective. Our current understanding of the role of PROP1 in the pituitary gland is limited to the repression and activation of the pituitary transcription fa...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.14470

    authors: Pérez Millán MI,Brinkmeier ML,Mortensen AH,Camper SA

    更新日期:2016-06-28 00:00:00

  • Inhibition of mTORC1 by ER stress impairs neonatal β-cell expansion and predisposes to diabetes in the Akita mouse.

    abstract::Unresolved ER stress followed by cell death is recognized as the main cause of a multitude of pathologies including neonatal diabetes. A systematic analysis of the mechanisms of β-cell loss and dysfunction in Akita mice, in which a mutation in the proinsulin gene causes a severe form of permanent neonatal diabetes, sh...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.38472

    authors: Riahi Y,Israeli T,Yeroslaviz R,Chimenez S,Avrahami D,Stolovich-Rain M,Alter I,Sebag M,Polin N,Bernal-Mizrachi E,Dor Y,Cerasi E,Leibowitz G

    更新日期:2018-11-09 00:00:00

  • Early asymmetric cues triggering the dorsal/ventral gene regulatory network of the sea urchin embryo.

    abstract::Dorsal/ventral (DV) patterning of the sea urchin embryo relies on a ventrally-localized organizer expressing Nodal, a pivotal regulator of the DV gene regulatory network. However, the inceptive mechanisms imposing the symmetry-breaking are incompletely understood. In Paracentrotus lividus, the Hbox12 homeodomain-conta...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.04664

    authors: Cavalieri V,Spinelli G

    更新日期:2014-12-02 00:00:00

  • Replication Study: Transcriptional amplification in tumor cells with elevated c-Myc.

    abstract::As part of the Reproducibility Project: Cancer Biology, we published a Registered Report (Blum et al., 2015), that described how we intended to replicate selected experiments from the paper 'Transcriptional amplification in tumor cells with elevated c-Myc' (Lin et al., 2012). Here we report the results. We found overe...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.30274

    authors: Lewis LM,Edwards MC,Meyers ZR,Talbot CC Jr,Hao H,Blum D,Reproducibility Project: Cancer Biology.

    更新日期:2018-01-09 00:00:00

  • Laminin signals initiate the reciprocal loop that informs breast-specific gene expression and homeostasis by activating NO, p53 and microRNAs.

    abstract::How mammalian tissues maintain their architecture and tissue-specificity is poorly understood. Previously, we documented both the indispensable role of the extracellular matrix (ECM) protein, laminin-111 (LN1), in the formation of normal breast acini, and the phenotypic reversion of cancer cells to acini-like structur...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.26148

    authors: Furuta S,Ren G,Mao JH,Bissell MJ

    更新日期:2018-03-21 00:00:00

  • The transcription factor Pitx2 positions the embryonic axis and regulates twinning.

    abstract::Embryonic polarity of invertebrates, amphibians and fish is specified largely by maternal determinants, which fixes cell fates early in development. In contrast, amniote embryos remain plastic and can form multiple individuals until gastrulation. How is their polarity determined? In the chick embryo, the earliest know...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.03743

    authors: Torlopp A,Khan MA,Oliveira NM,Lekk I,Soto-Jiménez LM,Sosinsky A,Stern CD

    更新日期:2014-12-11 00:00:00

  • Circuit mechanisms encoding odors and driving aging-associated behavioral declines in Caenorhabditis elegans.

    abstract::Chemosensory neurons extract information about chemical cues from the environment. How is the activity in these sensory neurons transformed into behavior? Using Caenorhabditis elegans, we map a novel sensory neuron circuit motif that encodes odor concentration. Primary neurons, AWC(ON) and AWA, directly detect the foo...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.10181

    authors: Leinwand SG,Yang CJ,Bazopoulou D,Chronis N,Srinivasan J,Chalasani SH

    更新日期:2015-09-22 00:00:00

  • Importin-9 wraps around the H2A-H2B core to act as nuclear importer and histone chaperone.

    abstract::We report the crystal structure of nuclear import receptor Importin-9 bound to its cargo, the histones H2A-H2B. Importin-9 wraps around the core, globular region of H2A-H2B to form an extensive interface. The nature of this interface coupled with quantitative analysis of deletion mutants of H2A-H2B suggests that the N...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.43630

    authors: Padavannil A,Sarkar P,Kim SJ,Cagatay T,Jiou J,Brautigam CA,Tomchick DR,Sali A,D'Arcy S,Chook YM

    更新日期:2019-03-11 00:00:00

  • Regulation of the Drosophila ID protein Extra macrochaetae by proneural dimerization partners.

    abstract::Proneural bHLH proteins are transcriptional regulators of neural fate specification. Extra macrochaetae (Emc) forms inactive heterodimers with both proneural bHLH proteins and their bHLH partners (represented in Drosophila by Daughterless). It is generally thought that varying levels of Emc define a prepattern that de...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.33967

    authors: Li K,Baker NE

    更新日期:2018-04-24 00:00:00

  • Systemic hypoxia inhibits T cell response by limiting mitobiogenesis via matrix substrate-level phosphorylation arrest.

    abstract::Systemic oxygen restriction (SOR) is prevalent in numerous clinical conditions, including chronic obstructive pulmonary disease (COPD), and is associated with increased susceptibility to viral infections. However, the influence of SOR on T cell immunity remains uncharacterized. Here we show the detrimental effect of h...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.56612

    authors: Saragovi A,Abramovich I,Omar I,Arbib E,Toker O,Gottlieb E,Berger M

    更新日期:2020-11-23 00:00:00

  • Structural basis for inhibition of erythrocyte invasion by antibodies to Plasmodium falciparum protein CyRPA.

    abstract::Plasmodium falciparum causes malaria in humans with over 450,000 deaths annually. The asexual blood stage involves invasion of erythrocytes by merozoites, in which they grow and divide to release daughter merozoites, which in turn invade new erythrocytes perpetuating the cycle responsible for malaria. A key step in me...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.21347

    authors: Chen L,Xu Y,Wong W,Thompson JK,Healer J,Goddard-Borger ED,Lawrence MC,Cowman AF

    更新日期:2017-02-14 00:00:00

  • The transcription factor NRSF contributes to epileptogenesis by selective repression of a subset of target genes.

    abstract::The mechanisms generating epileptic neuronal networks following insults such as severe seizures are unknown. We have previously shown that interfering with the function of the neuron-restrictive silencer factor (NRSF/REST), an important transcription factor that influences neuronal phenotype, attenuated development of...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.01267

    authors: McClelland S,Brennan GP,Dubé C,Rajpara S,Iyer S,Richichi C,Bernard C,Baram TZ

    更新日期:2014-08-12 00:00:00

  • Aurora A depletion reveals centrosome-independent polarization mechanism in Caenorhabditis elegans.

    abstract::How living systems break symmetry in an organized manner is a fundamental question in biology. In wild-type Caenorhabditis elegans zygotes, symmetry breaking during anterior-posterior axis specification is guided by centrosomes, resulting in anterior-directed cortical flows and a single posterior PAR-2 domain. We unco...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.44552

    authors: Klinkert K,Levernier N,Gross P,Gentili C,von Tobel L,Pierron M,Busso C,Herrman S,Grill SW,Kruse K,Gönczy P

    更新日期:2019-02-26 00:00:00

  • Cell-cycle-gated feedback control mediates desensitization to interferon stimulation.

    abstract::Cells use molecular circuits to interpret and respond to extracellular cues, such as hormones and cytokines, which are often released in a temporally varying fashion. In this study, we combine microfluidics, time-lapse microscopy, and computational modeling to investigate how the type I interferon (IFN)-responsive reg...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.58825

    authors: Mudla A,Jiang Y,Arimoto KI,Xu B,Rajesh A,Ryan AP,Wang W,Daugherty MD,Zhang DE,Hao N

    更新日期:2020-09-18 00:00:00

  • Single molecule analysis reveals reversible and irreversible steps during spliceosome activation.

    abstract::The spliceosome is a complex machine composed of small nuclear ribonucleoproteins (snRNPs) and accessory proteins that excises introns from pre-mRNAs. After assembly the spliceosome is activated for catalysis by rearrangement of subunits to form an active site. How this rearrangement is coordinated is not well-underst...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.14166

    authors: Hoskins AA,Rodgers ML,Friedman LJ,Gelles J,Moore MJ

    更新日期:2016-05-31 00:00:00