Abstract:
:Genome read categorization determines the genome of origin for sequence reads from an allopolyploid organism. Different techniques have been used to perform read categorization, mostly based on homoeo-SNPs identified between extant diploid relatives of allopolyploids. We present a novel technique for read categorization implemented by the software PolyDog. We demonstrate its accuracy and improved categorization relative to other methods. We discuss the situations in which one method or another might be most appropriate.
journal_name
BMC Genetjournal_title
BMC geneticsauthors
Page JT,Udall JAdoi
10.1186/1471-2156-16-S2-S4subject
Has Abstractpub_date
2015-01-01 00:00:00pages
S4issn
1471-2156pii
1471-2156-16-S2-S4journal_volume
16 Suppl 2pub_type
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