Effectiveness of 10 polymorphic microsatellite markers for parentage and pedigree analysis in plateau pika (Ochotona curzoniae).

Abstract:

BACKGROUND:The plateau pika (Ochotona curzoniae) is an underground-dwelling mammal, native to the Tibetan plateau of China. A set of 10 polymorphic microsatellite loci has been developed earlier. Its reliability for parentage assignment has been tested in a plateau pika population. Two family groups with a known pedigree were used to validate the power of this set of markers. RESULTS:The error in parentage assignment using a combination of these 10 loci was very low as indicated by their power of discrimination (0.803 - 0.932), power of exclusion (0.351 - 0.887), and an effectiveness of the combined probability of exclusion in parentage assignment of 99.999%. CONCLUSION:All the offspring of a family could be assigned to their biological mother; and their father or relatives could also be identified. This set of markers therefore provides a powerful and efficient tool for parentage assignment and other population analyses in the plateau pika.

journal_name

BMC Genet

journal_title

BMC genetics

authors

Li K,Geng J,Qu J,Zhang Y,Hu S

doi

10.1186/1471-2156-11-101

subject

Has Abstract

pub_date

2010-11-10 00:00:00

pages

101

issn

1471-2156

pii

1471-2156-11-101

journal_volume

11

pub_type

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