Methodologies and perspectives of proteomics applied to filamentous fungi: from sample preparation to secretome analysis.

Abstract:

:Filamentous fungi possess the extraordinary ability to digest complex biomasses and mineralize numerous xenobiotics, as consequence of their aptitude to sensing the environment and regulating their intra and extra cellular proteins, producing drastic changes in proteome and secretome composition. Recent advancement in proteomic technologies offers an exciting opportunity to reveal the fluctuations of fungal proteins and enzymes, responsible for their metabolic adaptation to a large variety of environmental conditions. Here, an overview of the most commonly used proteomic strategies will be provided; this paper will range from sample preparation to gel-free and gel-based proteomics, discussing pros and cons of each mentioned state-of-the-art technique. The main focus will be kept on filamentous fungi. Due to the biotechnological relevance of lignocellulose degrading fungi, special attention will be finally given to their extracellular proteome, or secretome. Secreted proteins and enzymes will be discussed in relation to their involvement in bio-based processes, such as biomass deconstruction and mycoremediation.

journal_name

Int J Mol Sci

authors

Bianco L,Perrotta G

doi

10.3390/ijms16035803

subject

Has Abstract

pub_date

2015-03-12 00:00:00

pages

5803-29

issue

3

issn

1422-0067

pii

ijms16035803

journal_volume

16

pub_type

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