N-terminal transmembrane domain of lipase LipA from Pseudomonas protegens Pf-5: A must for its efficient folding into an active conformation.

Abstract:

:LipA from Pseudomonas protegens Pf-5 has been proven not to be secreted into the extracytoplasmic space, proposing that it is a membrane protein in virtue of its N-terminal transmembrane domain predicted by the TMHMM 2.0. However, LipA was confirmed to be an intracellular protein through determining the effects of lipA deletion or overexpression on the lipase activities in the whole-cell, lysis supernatant and lysis pellet, even through its transmembrane domain being able to make heterologous LacZ locate on the cytoplasmic membrane via construction of β-galactosidase reporter strains. Subsequently, lipase activity assays showed that the transmembrane domain played an indispensable role for the catalytic function of LipA through construction of the markerless deletion mutant of transmembrane domain sequence of lipA and the expression and purification of LipA and LipAΔTMD. To further investigate why the transmembrane domain lost its membrane localization function and significantly affected the catalytic function of LipA, the 3D structures of LipA and LipAΔTMD were constructed. The results indicated that the transmembrane domain, located in the interior of LipA, helped the α-helical lid to form an open conformation by the mediation of α5 helix. It seems to act as a kind of intramolecular chaperone like the β-roll motif of subfamily I.3 lipases, which is novel and is the first to notify the intramolecular chaperone of a subfamily I.1 lipase.

journal_name

Biochimie

journal_title

Biochimie

authors

Zha D,Zhang H,Zhang H,Xu L,Yan Y

doi

10.1016/j.biochi.2014.07.007

subject

Has Abstract

pub_date

2014-10-01 00:00:00

pages

165-71

eissn

0300-9084

issn

1638-6183

pii

S0300-9084(14)00185-0

journal_volume

105

pub_type

杂志文章
  • Disintegrins of Crotalus simus tzabcan venom: Isolation, characterization and evaluation of the cytotoxic and anti-adhesion activities of tzabcanin, a new RGD disintegrin.

    abstract::Disintegrins are small non-enzymatic proteins common in the venoms of many viperid snakes. These proteins have received significant attention due to their ability to inhibit platelet aggregation and cell adhesion, making them model compounds in drug development and design investigations. The present study used a combi...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2015.07.005

    authors: Saviola AJ,Modahl CM,Mackessy SP

    更新日期:2015-09-01 00:00:00

  • Residual structure and dynamics in DMSO-d6 denatured dynein light chain protein.

    abstract::Structural and motional features in the denatured state of a protein dictate the early folding events starting from that state and these features vary depending upon the nature of the denaturant used. Here, we have attempted to decipher the early events in the folding of Dynein Light Chain protein (DLC8), starting fro...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2011.10.013

    authors: Chakraborty S,Mohan PM,Hosur RV

    更新日期:2012-01-01 00:00:00

  • PPAR gamma, 10 years later.

    abstract::It is now over 10 years since the discovery of peroxisome proliferator activated receptor gamma (PPAR gamma) and its unique role in adipogenesis. The subsequent identification of PPAR gamma as the target of insulin sensitizing drugs certified this ligand-regulated transcription factor as an exciting link between adipo...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2004.10.021

    authors: Lazar MA

    更新日期:2005-01-01 00:00:00

  • 7β-hydroxycholesterol-induced cell death, oxidative stress, and fatty acid metabolism dysfunctions attenuated with sea urchin egg oil.

    abstract::Some oxysterols resulting either from enzymatic oxidation or autoxidation of cholesterol are associated with age-related diseases including neurodegenerative diseases. Among these oxysterols, 7β-hydroxycholesterol (7β-OHC) is often found at increased levels in patients. It is therefore important to identify molecules ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2018.06.027

    authors: Zarrouk A,Ben Salem Y,Hafsa J,Sghaier R,Charfeddine B,Limem K,Hammami M,Majdoub H

    更新日期:2018-10-01 00:00:00

  • Dynamic expression of novel and conserved microRNAs and their targets in diploid and tetraploid of Paulownia tomentosa.

    abstract::MicroRNAs (miRNAs) play profound roles in plant growth and development by regulating gene expression. Tetraploid plants often have better physical characteristics and stress tolerance than their diploid progenitors, but the role of miRNAs in this superiority is unclear. Paulownia tomentosa, (Paulowniaceae) is attracti...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2014.02.008

    authors: Fan G,Zhai X,Niu S,Ren Y

    更新日期:2014-07-01 00:00:00

  • Alterations of endogenous sphingolipid metabolism in cardiometabolic diseases: Towards novel therapeutic approaches.

    abstract::The increasing prevalence of obesity and metabolic diseases is a worldwide public health concern, and the advent of new analytical technologies has made it possible to highlight the involvement of some molecules, such as sphingolipids (SL), in their pathophysiology. SL are constituents of cell membranes, lipoproteins ...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2019.10.003

    authors: Le Barz M,Boulet MM,Calzada C,Cheillan D,Michalski MC

    更新日期:2020-02-01 00:00:00

  • OURCIN: a tool to build expert systems.

    abstract::OURCIN is a tool to build expert systems, which was developed by a joint team from INRIA and SEMA. We emphasized developing on this system the ergonomic features which make Expert Systems a comfortable and interesting approach for knowledge engineering. ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(85)80267-4

    authors: Quinqueton J

    更新日期:1985-05-01 00:00:00

  • Antibodies to N-(guanosin-8-yl)-2-aminofluorene.

    abstract::Antibodies to Guo-AF were elicited in rabbits by immunization with bovine serum albumin -Guo-AF conjugate. The antibodies were purified by affinity chromatography. The affinity of the antibodies towards several ligands was studied by radioimmunoassays. The antibodies recognize Gua-AAF and Guo-AF (K(Guo-AF)/K(Guo-AAF) ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(80)80066-6

    authors: Rio P,Leng M

    更新日期:1980-01-01 00:00:00

  • Effect of beta-agonists on expression of calpain and calpastatin activity in skeletal muscle.

    abstract::Administration of beta-adrenergic agonists to domestic species can lead to skeletal muscle hypertrophy, probably by reducing the rate of myofibrillar protein breakdown. Myofibrillar breakdown is associated with the calcium-dependent proteinase system (calpains I,II and calpastatin) whose activity also changes during b...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(92)90125-x

    authors: Bardsley RG,Allcock SM,Dawson JM,Dumelow NW,Higgins JA,Lasslett YV,Lockley AK,Parr T,Buttery PJ

    更新日期:1992-03-01 00:00:00

  • Methylation process of mammalian ribosomal precursor RNA.

    abstract::The analysis of RNA from L5178 Y cells, by electrophoreis in 1.7% polyacrylamide gel, after short time labelling with [methyl-3H] methionine, shows that the three molecular species 47S, 46S and 45S RNA from the ribosomal RNA "45S fraction" are methylated. Comparative studies of the kinetics obtained after labelling fo...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(76)80544-5

    authors: Tiollais P,Auger MA,Galibert F

    更新日期:1975-11-01 00:00:00

  • Three-dimensional structure and antigen binding specificity of antibodies.

    abstract::A number of specific Fab and Fv fragments and their complexes with antigens (avian lysozymes), haptens, and anti-idiotopic Fabs have been studied by immunochemical and crystallographic techniques. Antigen and antibody interact through closely complementary contacting surfaces, without major conformational changes. An ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(90)90114-v

    authors: Tello D,Spinelli S,Souchon H,Saul FA,Riottot MM,Mariuzza RA,Lascombe MB,Houdusse A,Eiselé JL,Fischmann T

    更新日期:1990-08-01 00:00:00

  • Regulation of translation and cell growth by eIF-4E.

    abstract::This review discusses the regulation of a key controlling step in the initiation of protein synthesis, the binding of mRNA to ribosomes. Particular focus is given to the phosphorylation of the cap-binding factor, eIF-4E, and the role of this factor in the regulation of cell growth. ...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/0300-9084(94)90185-6

    authors: Sonenberg N

    更新日期:1994-01-01 00:00:00

  • Regulatory network of the allosteric ATP inhibition of E. coli phosphofructokinase-2 studied by hybrid dimers.

    abstract::We have proposed an allosteric ATP inhibition mechanism of Pfk-2 determining the structure of different forms of the enzyme together with a kinetic enzyme analysis. Here we complement the mechanism by using hybrid oligomers of the homodimeric enzyme to get insights about the allosteric communication pathways between t...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2016.08.013

    authors: Villalobos P,Soto F,Baez M,Babul J

    更新日期:2016-09-01 00:00:00

  • Modification of SR-PSOX functions by multi-point mutations of basic amino acid residues.

    abstract::SR-PSOX can function as a scavenger receptor, a chemokine and an adhesion molecule, and it could be an interesting player in the formation of atherosclerotic lesions. Our previous studies demonstrated that basic amino acid residues in the chemokine domain of SR-PSOX are critical for its functions. In this study the co...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2012.09.016

    authors: Liu W,Yin L,Dai Y

    更新日期:2013-02-01 00:00:00

  • Amphibian metamorphosis as a model for studying the developmental actions of thyroid hormone.

    abstract::The thyroid hormones L-thyroxine and triiodo-L-thyronine have profound effects on postembryonic development of most vertebrates. Analysis of their action in mammals is vitiated by the exposure of the developing foetus to a number of maternal factors which do not allow one to specifically define the role of thyroid hor...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(99)80082-0

    authors: Tata JR

    更新日期:1999-04-01 00:00:00

  • The relationship between HDL-, LDL-, liposomes-free cholesterol, biliary cholesterol and bile salts in the rat.

    abstract::In order to study the relationship between bile cholesterol and free cholesterol carried by high and low density lipoproteins (HDL and LDL), 10 male Wistar rats, 11 weeks old and fed with a standard diet were divided into 3 groups which received an intravenous infusion (jugular vein) of either LDL, HDL or liposomes. L...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(87)90270-7

    authors: Esnault-Dupuy C,Chanussot F,LaFont H,Chabert C,Hauton J

    更新日期:1987-01-01 00:00:00

  • Activation of regulator ArcA in the presence of hypochlorite in Salmonella enterica serovar Typhimurium.

    abstract::Oxidative stress is the main mechanism behind efficient disinfectants, causing damage in bacterial macromolecules. Importantly, bacteria activate resistance mechanisms in response to damage generated by oxidative stress. Strategies allowing pathogens to survive oxidative stress are highly conserved among microorganism...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2020.11.009

    authors: Cabezas CE,Laulié AM,Briones AC,Pardo-Esté C,Lorca DE,Cofré AA,Morales EH,Mora AY,Krüger GI,Bueno SM,Hidalgo AA,Saavedra CP

    更新日期:2021-01-01 00:00:00

  • May omega-3 fatty acid dietary supplementation help reduce severe complications in Covid-19 patients?

    abstract::In around 10% of SARS-CoV-2 infected patients, coronavirus disease-2019 (Covid-19) symptoms are complicated with a severe lung damage called Acute Respiratory Distress Syndrome (ARDS), which is often lethal. ARDS is mainly associated with an uncontrolled overproduction of immune cells and cytokines, called "cytokine s...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2020.09.003

    authors: Weill P,Plissonneau C,Legrand P,Rioux V,Thibault R

    更新日期:2020-12-01 00:00:00

  • Empirical genome evolution models root the tree of life.

    abstract::A reliable phylogenetic reconstruction of the evolutionary history of contemporary species depends on a robust identification of the universal common ancestor (UCA) at the root of the Tree of Life (ToL). That root polarizes the tree so that the evolutionary succession of ancestors to descendants is discernable. In eff...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2017.04.014

    authors: Harish A,Kurland CG

    更新日期:2017-07-01 00:00:00

  • Loop residues of thrombin-binding DNA aptamer impact G-quadruplex stability and thrombin binding.

    abstract::The thrombin-binding DNA aptamer (TBA) 5'-d(GGTTGGTGTGGTTGG)-3' forms a G-quadruplex that is necessary for binding to the coagulation factor thrombin. The stability of the G-quadruplex of TBA when bound to thrombin and potassium ion (K(+)) were investigated for the wild-type oligonucleotide and for mutants in which th...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2011.03.013

    authors: Nagatoishi S,Isono N,Tsumoto K,Sugimoto N

    更新日期:2011-08-01 00:00:00

  • Purification and characterization of a approximately 34 kDa antioxidant protein (beta-turmerin) from turmeric (Curcuma longa) waste grits.

    abstract::Beta-turmerin from turmeric (Curcuma longa) waste grits obtained after extraction of curcumin was purified by successive gel permeation chromatography. Homogeneity of beta-turmerin was confirmed by its movement as single band both in SDS-PAGE and as well as in native (basic) PAGE. The apparent molecular mass is approx...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2009.06.006

    authors: Smitha S,Dhananjaya BL,Dinesha R,Srinivas L

    更新日期:2009-09-01 00:00:00

  • Mitochondrial creatine kinase interaction with heterogeneous monolayers: Effect on lipid lateral organization.

    abstract::Our study highlights the tight relationship between protein binding to monolayers and the phase-state of the phospholipids. Interaction of mitochondrial creatine kinase with phospholipidic membranes was analysed using a two-phase monolayer system containing anionic phospholipids under chain mismatch conditions. Monola...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2009.03.014

    authors: Vernoux N,Maniti O,Marcillat O,Vial C,Granjon T

    更新日期:2009-06-01 00:00:00

  • Uncovering the secretes of mesenchymal stem cells.

    abstract::Mesenchymal stem cells (MSC) show great promise in a wide array of therapeutic applications due mainly to their capacity to suppress immune and inflammatory reactions and instigate normal tissue repair processes. The secretion of bioactive factors is thought to play a predominant role in the mechanisms of action for t...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2013.06.017

    authors: Lavoie JR,Rosu-Myles M

    更新日期:2013-12-01 00:00:00

  • Regulation of CIRL-1 proteolysis and trafficking.

    abstract::Calcium-independent receptor of alpha-latrotoxin (CIRL-1) is an adhesion G protein-coupled receptor implicated in the regulation of exocytosis. CIRL-1 biosynthesis involves constitutive proteolytic processing that takes place in the endoplasmic reticulum, requires the receptor's GPS domain, and yields heterologous two...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2010.01.015

    authors: Deyev IE,Petrenko AG

    更新日期:2010-04-01 00:00:00

  • Properties of gamma-aminobutyraldehyde dehydrogenase from Escherichia coli.

    abstract::gamma-Aminobutyraldehyde dehydrogenase from Escherichia coli K-12 has been purified and characterized from cell mutants able to grow in putrescine as the sole carbon and nitrogen source. The enzyme has an Mr of 195,000 +/- 10,000 in its dimeric form with an Mr of 95,000 +/- 1,000 for each subunit, a pH optimum at 5.4 ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(87)90142-8

    authors: Prieto MI,Martin J,Balaña-Fouce R,Garrido-Pertierra A

    更新日期:1987-11-01 00:00:00

  • Molecular cloning and characterization of four scorpion K(+)-toxin-like peptides: a new subfamily of venom peptides (alpha-KTx14) and genomic analysis of a member.

    abstract::Four full-length cDNAs encoding the precursors of four K(+)-toxin-like peptides (named BmKK(1), BmKK(2), BmKK(3) and BmmKK(4), respectively) were first isolated from a venom gland cDNA library of the Chinese scorpion Buthus martensii Karsch. The deduced precursors of BmKK(1), BmKK(2) and BmKK(3) are all made of 54 ami...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(01)01326-8

    authors: Zeng XC,Peng F,Luo F,Zhu SY,Liu H,Li WX

    更新日期:2001-09-01 00:00:00

  • Insulin-like growth factor I/somatomedin C action on 2-deoxyglucose and alpha-amino isobutyrate uptake in chick embryo fibroblasts.

    abstract::Maximum 125I-IGF-I/Sm-C total binding to chick embryo fibroblasts was 3% at +37 degrees C and decreased to less than 1% in presence of 2.8 X 10(-9) M unlabelled IGF-I/Sm-C. Insulin did not compete with IGF-I/Sm-C for the binding to cells. Biological action of IGF-I/Sm-C was evaluated on 2-deoxyglucose and alpha-aminoi...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(85)80118-8

    authors: Cynober L,Aussel C,Chatelain P,Vaubourdolle M,Agneray J,Ekindjian OG

    更新日期:1985-10-01 00:00:00

  • Brown and brite adipocytes: Same function, but different origin and response.

    abstract::Inducing brown adipocytes in white adipose tissues is a promising target to combat obesity and its related disorders in human beings. This goal has been especially encouraged by new important discoveries of human brown adipose tissues. The accumulating evidence confirms the presence of active brown adipocytes, not onl...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2017.04.017

    authors: Chu DT,Gawronska-Kozak B

    更新日期:2017-07-01 00:00:00

  • Serum vitamin B12 not reflecting vitamin B12 status in patients with type 2 diabetes.

    abstract::Contradictory results for concentrations of vitamin B12, holotranscobalamin (holoTC), and methylmalonic acid (MMA) have been reported. We tested the hypothesis that the extracellular vitamin B12 markers are not reflecting the intracellular vitamin B12-dependent biochemical reactions in individuals with type 2 diabetes...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2012.10.028

    authors: Obeid R,Jung J,Falk J,Herrmann W,Geisel J,Friesenhahn-Ochs B,Lammert F,Fassbender K,Kostopoulos P

    更新日期:2013-05-01 00:00:00

  • Glutathione modulation during sensitization as well as challenge phase regulates airway reactivity and inflammation in mouse model of allergic asthma.

    abstract::Glutathione, being a major intracellular redox regulator has been shown to be implicated in regulation of airway reactivity and inflammation. However, no study so far has investigated the effect of glutathione depletion/repletion during sensitization and challenge phases separately, which could provide an important in...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2014.04.001

    authors: Nadeem A,Siddiqui N,Alharbi NO,Alharbi MM,Imam F,Sayed-Ahmed MM

    更新日期:2014-08-01 00:00:00