Genome-wide survey and expression analysis of the MADS-box gene family in soybean.

Abstract:

:MADS-box genes encode important transcription factors in plants that are involved in many processes during plant growth and development. An investigation of the soybean genome revealed 106 putative MADS-box genes. These genes were classified into two classes, type I and type II, based on phylogenetic analysis. The soybean type II group has 72 members, which is higher than that of Arabidopsis, indicating that soybean type II genes have undergone a higher rate of duplication and/or a lower rate of gene loss after duplication. Soybean MADS-box genes are present on all chromosomes. Like Arabidopsis and rice MADS-box genes, soybean MADS-box genes expanded through tandem gene duplication and segmental duplication events. There are many duplicate genes distributed across the soybean genome, with two genomic regions, i.e., MADS-box gene hotspots, where MADS-box genes with high degrees of similarity are clustered. Analysis of high-throughput sequencing data from soybean at different developmental stages and in different tissues revealed that MADS-box genes are expressed in embryos of various stages and in floral buds. This expression pattern suggests that soybean MADS-box genes play an important role in soybean growth and floral development.

journal_name

Mol Biol Rep

authors

Shu Y,Yu D,Wang D,Guo D,Guo C

doi

10.1007/s11033-012-2438-6

subject

Has Abstract

pub_date

2013-06-01 00:00:00

pages

3901-11

issue

6

eissn

0301-4851

issn

1573-4978

journal_volume

40

pub_type

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