Evaluation of genotype-specific survival using joint analysis of genetic and non-genetic subsamples of longitudinal data.

Abstract:

:Small sample size of genetic data is often a limiting factor for desirable accuracy of estimated genetic effects on age-specific risks and survival. Longitudinal non-genetic data containing information on survival or disease onsets of study participants for whom the genetic data were not collected may provide an additional "reserve" for increasing the accuracy of respective estimates. We present a novel method for joint analyses of "genetic" (covering individuals for whom both genetic information and mortality/morbidity data are available) and "non-genetic" (covering individuals for whom only mortality/morbidity data were collected) subsamples of longitudinal data. Our simulation studies show substantial increase in the accuracy of estimates in such joint analyses compared to analyses based on genetic subsample alone. Application of this method to analysis of the effect of common apolipoprotein E (APOE) polymorphism on survival using combined genetic and non-genetic subsamples of the Framingham Heart Study original cohort data showed that female, but not male, carriers of the APOE e4 allele have significantly worse survival than non-carriers, whereas empirical analyses did not produce any significant results for either sex.

journal_name

Biogerontology

journal_title

Biogerontology

authors

Arbeev KG,Ukraintseva SV,Arbeeva LS,Akushevich I,Kulminski AM,Yashin AI

doi

10.1007/s10522-010-9316-1

subject

Has Abstract

pub_date

2011-04-01 00:00:00

pages

157-66

issue

2

eissn

1389-5729

issn

1573-6768

journal_volume

12

pub_type

杂志文章
  • Effect of chronic treatments with GH, melatonin, estrogens, and phytoestrogens on oxidative stress parameters in liver from aged female rats.

    abstract::The aging theory postulates that this process may be due to the accumulation of oxidative damage in cells and molecules. The present study has investigated the effect of castration in old female rats on various parameters related to the antioxidant properties of several cellular fractions obtained from the liver, and ...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-007-9089-3

    authors: Kireev RA,Tresguerres AF,Vara E,Ariznavarreta C,Tresguerres JA

    更新日期:2007-10-01 00:00:00

  • Physiology declines prior to death in Drosophila melanogaster.

    abstract::For a period of 6-15 days prior to death, the fecundity and virility of Drosophila melanogaster fall significantly below those of same-aged flies that are not near death. It is likely that other aspects of physiology may decline during this period. This study attempts to document changes in two physiological character...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-012-9398-z

    authors: Shahrestani P,Tran X,Mueller LD

    更新日期:2012-10-01 00:00:00

  • Neoplastic disease through the human life span.

    abstract::Cancers are different diseases that start and evolve each in its own manner, and trigger variable responses from the organism depending upon the neoplastic process under way and upon the physiopathology of the organism. The clinical incidence of the different cancers is spread through the human life span, with regiona...

    journal_title:Biogerontology

    pub_type: 杂志文章,评审

    doi:10.1023/a:1011552822076

    authors: Macieira-Coelho A

    更新日期:2001-01-01 00:00:00

  • Age-dependent differential expression of death-associated protein 6 (Daxx) in various peripheral tissues and different brain regions of C57BL/6 male mice.

    abstract::Death-associated protein 6 (DAXX) is a ubiquitous protein implicated in various cellular processes such as apoptosis, tumorigenesis, development and transcription. The role of DAXX is however ambiguous and many contradictory results regarding its function in apoptosis upon various cellular stresses are described in th...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-016-9651-y

    authors: Lessard-Beaudoin M,Laroche M,Demers MJ,Duclos C,Denault JB,Grenier G,Riechers SP,Wanker EE,Graham RK

    更新日期:2016-11-01 00:00:00

  • D-galactose: a model of accelerated ageing sufficiently sensitive to reflect preventative efficacy of an antioxidant treatment.

    abstract::Considering that the phenomenon of accelerated ageing contributes to early onset of various chronic diseases, modelling of the relevant dysregulated systems or responses is vital for research aimed at identification of potential therapeutic targets. Here, we aimed to establish a model capable of simulating the redox a...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-020-09891-x

    authors: Ross KS,Smith C

    更新日期:2020-12-01 00:00:00

  • Identification of histone methylation multiplicities patterns in the brain of senescence-accelerated prone mouse 8.

    abstract::Histone post-translational modifications (PTMs) are involved in diverse biological processes and methylation was regarded as a long-term epigenetic mark. Though aging represented one of the major risk factors for neurodegenerative diseases, no systematic investigations had correlated the patterns of histone PTMs in th...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-009-9231-5

    authors: Wang CM,Tsai SN,Yew TW,Kwan YW,Ngai SM

    更新日期:2010-02-01 00:00:00

  • An evolutionary heterogeneity model of late-life fecundity in Drosophila.

    abstract::There is now a significant body of research that establishes the deceleration of mortality rates in late life and their ultimate leveling off on a late-life plateau. Natural selection has been offered as one mechanism responsible for these plateaus. The force of natural selection should also exert such effects on fema...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-006-9042-x

    authors: Mueller LD,Rauser CL,Rose MR

    更新日期:2007-04-01 00:00:00

  • Age-related alterations of Apolipoprotein E and interleukin-1beta in the aging brain.

    abstract::With normal aging, the brain undergoes several alterations including reduced neuronal functioning and alterations in glia homeostasis. An increase in inflammatory signaling has also been reported in some studies of the aging brain, with inflammation potentially mediating age-related changes in the brain. Apolipoprotei...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-005-6039-9

    authors: Gee JR,Ding Q,Keller JN

    更新日期:2006-04-01 00:00:00

  • Cross-life stage and cross-generational effects of gamma irradiations at the egg stage on Drosophila melanogaster life histories.

    abstract::The long-term effects of X-irradiation with 0.25, 0.5, 0.75 and 1 Gy of 1 h eggs on the fitness-related life history traits in adult Drosophila melanogaster fruit flies and their offspring were investigated. Following irradiation with 0.25, 0.5 and 0.75 Gy, both F0 and F1 flies have decreased adult body weight and inc...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-004-2571-2

    authors: Vaiserman AM,Koshel NM,Mechova LV,Voitenko VP

    更新日期:2004-01-01 00:00:00

  • Sarcopenia: current theories and the potential beneficial effect of creatine application strategies.

    abstract::Sarcopenia, defined as the age-related loss of muscle mass, subsequently has a negative effect on strength, metabolic rate and functionality leading to a reduced quality of life. With the projected increase in life expectancy, the incidence of muscle loss may rise and further drain the health care system, with greater...

    journal_title:Biogerontology

    pub_type: 杂志文章,评审

    doi:10.1007/s10522-011-9327-6

    authors: Candow DG

    更新日期:2011-08-01 00:00:00

  • Mitochondrial biogenesis and neural differentiation of human iPSC is modulated by idebenone in a developmental stage-dependent manner.

    abstract::Idebenone, the synthetic analog of coenzyme Q10 can improve electron transport in mitochondria. Therefore, it is used in the treatment of Alzheimer's disease and other cognitive impairments. However, the mechanism of its action on neurodevelopment is still to be elucidated. Here we demonstrate that the cellular respon...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-017-9718-4

    authors: Augustyniak J,Lenart J,Zychowicz M,Stepien PP,Buzanska L

    更新日期:2017-08-01 00:00:00

  • Caloric restriction increases longevity substantially only when the reaction norm is steep.

    abstract::Evolutionary theory leads to the general expectation that dietary restriction will often result in increased survival probabilities, and thus increased lifespan. The reaction norm is a basic tool of evolutionary analysis that quantifies the relationship between environmental parameters and functional characters, inclu...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-006-9005-2

    authors: Phelan JP,Rose MR

    更新日期:2006-06-01 00:00:00

  • Glycerol stimulates innate chaperoning, proteasomal and stress-resistance functions: implications for geronto-manipulation.

    abstract::Aging is associated with accumulation of toxic intracellular and extracellular protein aggregates. Cells manage "aged" proteins by mobilizing their molecular chaperones or heat shock proteins that are also considered as determinants of lifespan in diverse species. In this study, we tested whether an exogenous addition...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-008-9136-8

    authors: Deocaris CC,Takano S,Priyandoko D,Kaul Z,Yaguchi T,Kraft DC,Yamasaki K,Kaul SC,Wadhwa R

    更新日期:2008-08-01 00:00:00

  • Reproducible effects of the mitochondria-targeted plastoquinone derivative SkQ1 on Drosophila melanogaster lifespan under different experimental scenarios.

    abstract::Previously, extremely low, nanomolar concentrations of the mitochondria-targeted plastoquinone derivative SkQ1 (10-(6'-plastoquinonyl) decyltriphenylphosphonium) were shown to prolong the lifespan of male and female Drosophila melanogaster by about 10 % (Anisimov et al., Biochemistry (Moscow) 73:1329-1342, 2008). Usin...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-012-9404-5

    authors: Krementsova AV,Roshina NV,Tsybul'ko EA,Rybina OY,Symonenko AV,Pasyukova EG

    更新日期:2012-12-01 00:00:00

  • Life extension in Drosophila maintained under lengthened light/dark regime.

    abstract::In the present study, we investigated whether the length of light/dark cycle could influence the pre-adult developmental time and adult life span in Drosophila melanogaster. Flies were reared to adulthood and maintained as adults under both 24-h (light/dark 12:12 h) and 48-h (light/dark 24:24 h) cycles. The flies rear...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-008-9146-6

    authors: Vaiserman AM,Pisaruck AV,Timchenko AN,Voitenko VP,Koshel NM,Grigoriev PE

    更新日期:2008-10-01 00:00:00

  • The Fischer 344/NNiaHSd X Brown Norway/BiNia is a better model of sarcopenia than the Fischer 344/NNiaHSd: a comparative analysis of muscle mass and contractile properties in aging male rat models.

    abstract::Sarcopenia, characterized by profound muscle atrophy and the loss of contractile function, contributes significantly to the development of frailty and functional impairment in older age. Although present in aging humans, rat models have failed to clearly demonstrate a similar degree of this age-associated loss of musc...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-005-4808-0

    authors: Rice KM,Linderman JK,Kinnard RS,Blough ER

    更新日期:2005-01-01 00:00:00

  • Effects of lifelong exercise and aging on the blood metabolic fingerprint of rats.

    abstract::Regular exercise is an important part of a healthy lifestyle, as it helps maintain a healthy weight and reduces the risk of chronic diseases. We explored the effects of lifelong exercise and aging on rat metabolism through a metabolomics approach. Thirty-six rats were divided into four equal groups: exercise during th...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-020-09871-1

    authors: Tzimou A,Benaki D,Nikolaidis S,Mikros E,Taitzoglou I,Mougios V

    更新日期:2020-10-01 00:00:00

  • Chromosome and aging: genetic conception of aging.

    abstract::The mutation level (chromosome aberrations covering telomere regions), modifications of chromosome structure (level of condensed chromatin identified by the methods of electron microscopy and differential scanning microcalorimetry; level of C-banding constitutive heterochromatin; transcriptional activity of DNA-depend...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1023/a:1013266411263

    authors: Lezhava T

    更新日期:2001-01-01 00:00:00

  • Effect of insulin and growth hormone on rat heart and liver oxidative stress in control and caloric restricted animals.

    abstract::In order to know if insulin-like signalling is involved in the control of oxidative stress in mammalian tissues in relation to aging, ad libitum-fed and caloric restricted Wistar rats were treated during 2 weeks with GH and insulin. The most consistent effect of the hormonal treatments was an increase in plasma IGF-1 ...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-004-7380-0

    authors: Sanz A,Gredilla R,Pamplona R,Portero-Otín M,Vara E,Tresguerres JA,Barja G

    更新日期:2005-01-01 00:00:00

  • The senescence-accelerated mouse (SAM-P8) as a model for the study of vascular functional alterations during aging.

    abstract::We studied vascular function in quiescent aortas from senescence-accelerated resistant (SAM-R1) and prone (SAM-P8) mice. Myographical studies of thoracic aorta segments from 6-7 month-old mice showed that the contractility of SAM-P8 aortas was markedly higher than that of SAM-R1 after KCl depolarization or phenylephri...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-007-9108-4

    authors: Lloréns S,de Mera RM,Pascual A,Prieto-Martín A,Mendizábal Y,de Cabo C,Nava E,Jordán J

    更新日期:2007-12-01 00:00:00

  • Involvement of IGF binding protein 5 in prostaglandin E(2)-induced cellular senescence in human fibroblasts.

    abstract::Inflammation is an underlying basis for the molecular alterations that link aging and age-related pathological processes. In a previous study, we found that secretory phospholipase A(2) (sPLA(2)) induced cellular senescence in human dermal fibroblasts (HDFs). To further investigate the association of inflammation with...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-010-9318-z

    authors: Yang HH,Kim C,Jung B,Kim KS,Kim JR

    更新日期:2011-06-01 00:00:00

  • Up-regulation of nicotinamide phosphoribosyltransferase and increase of NAD+ levels by glucose restriction extend replicative lifespan of human fibroblast Hs68 cells.

    abstract::Calorie restriction (CR) extends lifespan in a remarkable range of organisms. However, the mechanisms of CR related to the longevity effects are not fully elucidated to date. Using human fibroblast Hs68 (Hs68) cells cultured at a lower level of medium glucose (i.e., glucose restriction; GR) to mimic CR, we investigate...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-014-9528-x

    authors: Yang NC,Song TY,Chang YZ,Chen MY,Hu ML

    更新日期:2015-02-01 00:00:00

  • Dissecting cause and effect in host-microbiome interactions using the combined worm-bug model system.

    abstract::High-throughput molecular studies are greatly advancing our knowledge of the human microbiome and its specific role in governing health and disease states. A myriad of ongoing studies aim at identifying links between microbial community disequilibria (dysbiosis) and human diseases. However, due to the inherent complex...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-018-9752-x

    authors: Ezcurra M

    更新日期:2018-12-01 00:00:00

  • The accuracy of statistical estimates in genetic studies of aging can be significantly improved.

    abstract::The sample size of the data used in genetic studies is often a factor limiting the accuracy of statistical estimates. In this paper we suggest a new approach to evaluation of genetic influence on risk of development of aging-related health disorders. The approach results in substantial improvement of the accuracy of s...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-006-9072-4

    authors: Yashin AI,Arbeev KG,Ukraintseva SV

    更新日期:2007-06-01 00:00:00

  • Muscle-specificity of age-related changes in markers of autophagy and sphingolipid metabolism.

    abstract::Our previous findings indicate that the gastrocnemius muscle of aging rats exhibits impairments of muscle quality (force/unit muscle tissue) and autophagy and increased sarcoplasmic reticulum stress. The purpose of this study was to examine age-related changes in soleus muscle contractility and in markers of autophagy...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-015-9598-4

    authors: Russ DW,Boyd IM,McCoy KM,McCorkle KW

    更新日期:2015-12-01 00:00:00

  • Long-term dietary restriction differentially affects the expression of BDNF and its receptors in the cortex and hippocampus of middle-aged and aged male rats.

    abstract::Dietary restriction (DR) exerts significant beneficial effects in terms of aging and age-related diseases in many organisms including humans. The present study aimed to examine the influence of long-term DR on the BDNF system at the transcriptional and translational levels in the cortex and hippocampus of middle-aged ...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-014-9537-9

    authors: Smiljanic K,Pesic V,Mladenovic Djordjevic A,Pavkovic Z,Brkic M,Ruzdijic S,Kanazir S

    更新日期:2015-02-01 00:00:00

  • The secretory phenotype of senescent astrocytes isolated from Wistar newborn rats changes with anti-inflammatory drugs, but does not have a short-term effect on neuronal mitochondrial potential.

    abstract::In the central nervous system (CNS), senescent astrocytes have been associated with neurodegeneration. Senescent cells secrete a complex mixture of pro-inflammatory factors, which are collectively called Senescence Associated Secretory Phenotype (SASP). The SASP components can vary depending on the cell type, senescen...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-018-9767-3

    authors: Maciel-Barón LÁ,Morales-Rosales SL,Silva-Palacios A,Rodríguez-Barrera RH,García-Álvarez JA,Luna-López A,Pérez VI,Torres C,Königsberg M

    更新日期:2018-10-01 00:00:00

  • Is rate of skin wound healing associated with aging or longevity phenotype?

    abstract::Wound healing (WH) is a fundamental biological process. Is it associated with a longevity or aging phenotype? In an attempt to answer this question, we compared the established mouse models with genetically modified life span and also an altered rate of WH in the skin. Our analysis showed that the rate of skin WH in a...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-011-9343-6

    authors: Yanai H,Budovsky A,Tacutu R,Fraifeld VE

    更新日期:2011-12-01 00:00:00

  • Reproduction, aging and mortality rate in social subterranean mole voles (Ellobius talpinus Pall.).

    abstract::Eusocial subterranean rodents of the Bathyergidae family have enormous longevity. The long lifespan of these species is associated with negligible senescence, that is, an absence of the signs of age-related deterioration in physical condition. The question arises as to whether these features are unique to eusocial Bat...

    journal_title:Biogerontology

    pub_type: 杂志文章

    doi:10.1007/s10522-015-9592-x

    authors: Novikov E,Kondratyuk E,Petrovski D,Titova T,Zadubrovskaya I,Zadubrovskiy P,Moshkin M

    更新日期:2015-12-01 00:00:00

  • Insulin/insulin-like growth factor-1 signalling (IIS) based regulation of lifespan across species.

    abstract::An organism's well-being is facilitated by numerous molecular and biochemical pathways that ensure homeostasis within cells and tissues. Aging causes a gradual let-down in the maintenance of homeostasis due to various endogenous and environmental challenges, leading to amassing of damages, functional deterioration of ...

    journal_title:Biogerontology

    pub_type: 杂志文章,评审

    doi:10.1007/s10522-016-9670-8

    authors: Mathew R,Pal Bhadra M,Bhadra U

    更新日期:2017-02-01 00:00:00