Genetic interactions of the Aspergillus nidulans atmAATM homolog with different components of the DNA damage response pathway.

Abstract:

:Ataxia telangiectasia mutated (ATM) is a phosphatidyl-3-kinase-related protein kinase that functions as a central regulator of the DNA damage response in eukaryotic cells. In humans, mutations in ATM cause the devastating neurodegenerative disease ataxia telangiectasia. Previously, we characterized the homolog of ATM (AtmA) in the filamentous fungus Aspergillus nidulans. In addition to its expected role in the DNA damage response, we found that AtmA is also required for polarized hyphal growth. Here, we extended these studies by investigating which components of the DNA damage response pathway are interacting with AtmA. The AtmA(ATM) loss of function caused synthetic lethality when combined with mutation in UvsB(ATR). Our results suggest that AtmA and UvsB are interacting and they are probably partially redundant in terms of DNA damage sensing and/or repairing and polar growth. We identified and inactivated A. nidulans chkA(CHK1) and chkB(CHK2) genes. These genes are also redundantly involved in A. nidulans DNA damage response. We constructed several combinations of double mutants for DeltaatmA, DeltauvsB, DeltachkA, and DeltachkB. We observed a complex genetic relationship with these mutations during the DNA replication checkpoint and DNA damage response. Finally, we observed epistatic and synergistic interactions between AtmA, and bimE(APC1), ankA(WEE1) and the cdc2-related kinase npkA, at S-phase checkpoint and in response to DNA-damaging agents.

journal_name

Genetics

journal_title

Genetics

authors

Malavazi I,Lima JF,de Castro PA,Savoldi M,de Souza Goldman MH,Goldman GH

doi

10.1534/genetics.107.080879

subject

Has Abstract

pub_date

2008-02-01 00:00:00

pages

675-91

issue

2

eissn

0016-6731

issn

1943-2631

pii

genetics.107.080879

journal_volume

178

pub_type

杂志文章

相关文献

GENETICS文献大全
  • Site-Specific Recombination with Inverted Target Sites: A Cautionary Tale of Dicentric and Acentric Chromosomes.

    abstract::Site-specific recombinases are widely used tools for analysis of genetics, development, and cell biology, and many schemes have been devised to alter gene expression by recombinase-mediated DNA rearrangements. Because the FRT and lox target sites for the commonly used FLP and Cre recombinases are asymmetrical, and mus...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.120.303394

    authors: Titen SWA,Johnson MTB,Capecchi M,Golic KG

    更新日期:2020-08-01 00:00:00

  • gon-14 functions with class B and class C synthetic multivulva genes to control larval growth in Caenorhabditis elegans.

    abstract::Previous work showed that C. elegans gon-14 is required for gonadogenesis. Here we report that gon-14 encodes a protein with similarity to LIN-15B, a class B synMuv protein. An extensive region of GON-14 contains blocks of sequence similarity to transposases of the hAT superfamily, but key residues are not conserved, ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.105.048751

    authors: Chesney MA,Kidd AR 3rd,Kimble J

    更新日期:2006-02-01 00:00:00

  • The Saccharomyces cerevisiae DNA recombination and repair functions of the RAD52 epistasis group inhibit Ty1 transposition.

    abstract::RNA transcribed from the Saccharomyces cerevisiae retrotransposon Ty1 accumulates to a high level in mitotically growing haploid cells, yet transposition occurs at very low frequencies. The product of reverse transcription is a linear double-stranded DNA molecule that reenters the genome by either Ty1-integrase-mediat...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Rattray AJ,Shafer BK,Garfinkel DJ

    更新日期:2000-02-01 00:00:00

  • Genetic control of horizontal virus transmission in the chestnut blight fungus, Cryphonectria parasitica.

    abstract::Vegetative incompatibility in fungi has long been known to reduce the transmission of viruses between individuals, but the barrier to transmission is incomplete. In replicated laboratory assays, we showed conclusively that the transmission of viruses between individuals of the chestnut blight fungus Cryphonectria para...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Cortesi P,McCulloch CE,Song H,Lin H,Milgroom MG

    更新日期:2001-09-01 00:00:00

  • Toward a marker-dense meiotic map of the potato genome: lessons from linkage group I.

    abstract::Segregation data were obtained for 1260 potato linkage group I-specific AFLP loci from a heterozygous diploid potato population. Analytical tools that identified potential typing errors and/or inconsistencies in the data and that assembled cosegregating markers into bins were applied. Bins contain multiple-marker data...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Isidore E,van Os H,Andrzejewski S,Bakker J,Barrena I,Bryan GJ,Caromel B,van Eck H,Ghareeb B,de Jong W,van Koert P,Lefebvre V,Milbourne D,Ritter E,van der Voort JR,Rousselle-Bourgeois F,van Vliet J,Waugh R

    更新日期:2003-12-01 00:00:00

  • Predicting and testing physical locations of genetically mapped loci on tomato pachytene chromosome 1.

    abstract::Predicting the chromosomal location of mapped markers has been difficult because linkage maps do not reveal differences in crossover frequencies along the physical structure of chromosomes. Here we combine a physical crossover map based on the distribution of recombination nodules (RNs) on Solanum lycopersicum (tomato...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.074138

    authors: Chang SB,Anderson LK,Sherman JD,Royer SM,Stack SM

    更新日期:2007-08-01 00:00:00

  • Improving quantitative trait loci mapping resolution in experimental crosses by the use of genotypically selected samples.

    abstract::One of the key factors contributing to the success of a quantitative trait locus (QTL) mapping experiment is the precision with which QTL positions can be estimated. We show, using simulations, that QTL mapping precision for an experimental cross can be increased by the use of a genotypically selected sample of indivi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.033746

    authors: Xu Z,Zou F,Vision TJ

    更新日期:2005-05-01 00:00:00

  • Female fertility and mating type effects on effective population size and evolution in filamentous fungi.

    abstract::The idealized individual in many fungal species is a haploid self-sterile hermaphrodite that may be propagated by asexually produced spores or that may reproduce sexually. In field populations, polymorphism occurs for female-sterile/hermaphrodite status, and female-sterile mutants, which function only as males during ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Leslie JF,Klein KK

    更新日期:1996-10-01 00:00:00

  • Bipartite structure of the 5S ribosomal gene family in a Drosophila melanogaster strain, and its evolutionary implications.

    abstract::Knowledge of multigenic family organization should provide insight into their mode of evolution. Accordingly, we characterized the 5S ribosomal gene family in the Drosophila melanogaster strain ry506. The 5S genes in this strain display a striking HindIII restriction difference compared to the "standard" D. melanogast...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Samson ML,Wegnez M

    更新日期:1988-04-01 00:00:00

  • SVF1 regulates cell survival by affecting sphingolipid metabolism in Saccharomyces cerevisiae.

    abstract::Sphingolipid signaling plays an important role in the regulation of central cellular processes, including cell growth, survival, and differentiation. Many of the essential pathways responsible for sphingolipid biogenesis, and key cellular responses to changes in sphingolipid balance, are conserved between mammalian an...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.064527

    authors: Brace JL,Lester RL,Dickson RC,Rudin CM

    更新日期:2007-01-01 00:00:00

  • Specificity of insertion by the translocatable tetracycline-resistance element Tn10.

    abstract::Genetic analysis of 131 independent transpositions of the tetracycline-resistance element Tn10 from a single site in phage P22 into the histidine operon of Salmonella typhimurium reveals that Tn10 insertions are not randomly distributed along this chromosomal target. The insertions occur in 22 different "clusters"; in...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Kleckner N,Steele DA,Reichardt K,Botstein D

    更新日期:1979-08-01 00:00:00

  • Apparent selection of enzyme alleles in laboratory populations of Drosophila.

    abstract::Twelve laboratory populations of recently collected Drosophila willistoni were begun with different frequencies of alleles at three enzyme loci, six populations at 25 degrees and six at 19 degrees . Periodic sampling of the populations allowed monitoring of the frequency changes in allozymes over time.-At Lap-5 (a loc...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Powell JR

    更新日期:1973-11-01 00:00:00

  • Lack of genic similarity between two sibling species of drosophila as revealed by varied techniques.

    abstract::Acrylamide gel electrophoresis was performed on the enzyme xanthine dehydrogenase in sixty isochromosomal lines of Drosophila persimilis from three geographic populations. Sequential electrophoretic analysis using varied gel concentrations and buffers revealed twenty-three alleles in this species where only five had b...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Coyne JA

    更新日期:1976-11-01 00:00:00

  • Natural variation for alleles under epigenetic control by the maize chromomethylase zmet2.

    abstract::The contribution of epigenetic alterations to natural variation for gene transcription levels remains unclear. In this study, we investigated the functional targets of the maize chromomethylase ZMET2 in multiple inbred lines to determine whether epigenetic changes conditioned by this chromomethylase are conserved or v...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.072702

    authors: Makarevitch I,Stupar RM,Iniguez AL,Haun WJ,Barbazuk WB,Kaeppler SM,Springer NM

    更新日期:2007-10-01 00:00:00

  • Chromosome-designated mutation selection in Tetrahymena thermophila.

    abstract::Two protocols are presented that allow the selection of mutations mapping to micronuclear chromosome 5 in Tetrahymena thermophilia. One protocol involves crossing mutagenized diploid cells directly to a strain nullisomic for chromosome 5 and screening the monosomic progeny for a mutant phenotype. The second protocol f...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Altschuler MI,Bruns PJ

    更新日期:1984-03-01 00:00:00

  • The effects of r- and K-selection on components of variance for two quantitative traits.

    abstract::The genetic and environmental components of variance for two quantitative characters were measured in the descendants of Drosophila melanogaster populations which had been grown for several generations at densities of 100, 200, 300, and 400 eggs per vial. Populations subject to intermediate densities had a greater pro...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Long T,Long G

    更新日期:1974-03-01 00:00:00

  • Mosaicism of Solid Gold supports the causality of a noncoding A-to-G transition in the determinism of the callipyge phenotype.

    abstract::To identify the callipyge mutation, we have resequenced 184 kb spanning the DLK1-, GTL2-, PEG11-, and MEG8-imprinted domain and have identified an A-to-G transition in a highly conserved dodecamer motif between DLK1 and GTL2. This was the only difference found between the callipyge (CLPG) allele and a phylogenetically...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Smit M,Segers K,Carrascosa LG,Shay T,Baraldi F,Gyapay G,Snowder G,Georges M,Cockett N,Charlier C

    更新日期:2003-01-01 00:00:00

  • Bivariate Analysis of Age-Related Macular Degeneration Progression Using Genetic Risk Scores.

    abstract::Age-related macular degeneration (AMD) is a leading cause of blindness in the developed world. While many AMD susceptibility variants have been identified, their influence on AMD progression has not been elucidated. Using data from two large clinical trials, Age-Related Eye Disease Study (AREDS) and AREDS2, we evaluat...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.116.196998

    authors: Ding Y,Liu Y,Yan Q,Fritsche LG,Cook RJ,Clemons T,Ratnapriya R,Klein ML,Abecasis GR,Swaroop A,Chew EY,Weeks DE,Chen W,AREDS2 Research Group.

    更新日期:2017-05-01 00:00:00

  • Regulation of Cell-to-Cell Communication and Cell Wall Integrity by a Network of MAP Kinase Pathways and Transcription Factors in Neurospora crassa.

    abstract::Maintenance of cell integrity and cell-to-cell communication are fundamental biological processes. Filamentous fungi, such as Neurospora crassa, depend on communication to locate compatible cells, coordinate cell fusion, and establish a robust hyphal network. Two MAP kinase (MAPK) pathways are essential for communicat...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.118.300904

    authors: Fischer MS,Wu VW,Lee JE,O'Malley RC,Glass NL

    更新日期:2018-06-01 00:00:00

  • Conserved WCPL and CX4C domains mediate several mating adhesin interactions in Saccharomyces cerevisiae.

    abstract::Several adhesins are induced by pheromones during mating in Saccharomyces cerevisiae, including Aga1p, Aga2p, Sag1p (Agalpha1p), and Fig2p. These four proteins all participate in or influence a well-studied agglutinin interaction mediated by Aga1p-Aga2p complexes and Sag1p; however, they also play redundant and essent...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.108.100073

    authors: Huang G,Dougherty SD,Erdman SE

    更新日期:2009-05-01 00:00:00

  • Depletion of a novel SET-domain protein enhances the sterility of mes-3 and mes-4 mutants of Caenorhabditis elegans.

    abstract::Four maternal-effect sterile genes, mes-2, mes-3, mes-4, and mes-6, are essential for germline development in Caenorhabditis elegans. Homozygous mes progeny from heterozygous mothers are themselves fertile but produce sterile progeny with underproliferated and degenerated germlines. All four mes genes encode chromatin...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Xu L,Strome S

    更新日期:2001-11-01 00:00:00

  • Genetic modifier screens in Drosophila demonstrate a role for Rho1 signaling in ecdysone-triggered imaginal disc morphogenesis.

    abstract::Drosophila adult leg development provides an ideal model system for characterizing the molecular mechanisms of hormone-triggered morphogenesis. A pulse of the steroid hormone ecdysone at the onset of metamorphosis triggers the rapid transformation of a flat leg imaginal disc into an immature adult leg, largely through...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Ward RE,Evans J,Thummel CS

    更新日期:2003-11-01 00:00:00

  • The effects of assortative mating and migration on cytonuclear associations in hybrid zones.

    abstract::We examine the influence of nonrandom mating and immigration on the evolutionary dynamics of cytonuclear associations in hybrid zones. Recursion equations for allelic and genotypic cytonuclear disequilibria were generated under models of (1) migration alone, assuming hybrid zone matings are random with respect to cyto...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Asmussen MA,Arnold J,Avise JC

    更新日期:1989-08-01 00:00:00

  • Length variation and heteroplasmy are frequent in mitochondrial DNA from parthenogenetic and bisexual lizards (genus Cnemidophorus).

    abstract::Samples of mtDNA isolated from each of 92 lizards representing all color pattern classes of Cnemidophorus tesselatus and two populations of C. tigris marmoratus were digested with the restriction endonucleases MboI, TaqI, RsaI and MspI. The mtDNA fragment sizes were compared after radioactive labeling and gel electrop...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Densmore LD,Wright JW,Brown WM

    更新日期:1985-08-01 00:00:00

  • Identification of an alternative oxidase induction motif in the promoter region of the aod-1 gene in Neurospora crassa.

    abstract::The nuclear aod-1 gene of Neurospora crassa encodes the alternative oxidase and is induced when the standard cytochrome-mediated respiratory chain of mitochondria is inhibited. To study elements of the pathway responsible for alternative oxidase induction, we generated a series of mutations in the region upstream from...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.068635

    authors: Chae MS,Lin CC,Kessler KE,Nargang CE,Tanton LL,Hahn LB,Nargang FE

    更新日期:2007-04-01 00:00:00

  • Genetic characterization of the sufj frameshift suppressor in Salmonella typhimurium.

    abstract::A new suppressor of +1 frameshift mutations has been isolated in Salmonella typhimurium. This suppressor, sufJ, maps at minute 89 on the Salmonella genetic map between the argH and rpo(rif) loci, closely linked to the gene for the ochre suppressor tyrU(supM). The suppressor mutation is dominant to its wild-type allele...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Bossi L,Kohno T,Roth JR

    更新日期:1983-01-01 00:00:00

  • Tissue-Specific Transcription Footprinting Using RNA PoI DamID (RAPID) in Caenorhabditis elegans.

    abstract::Differential gene expression across cell types underlies development and cell physiology in multicellular organisms. Caenorhabditis elegans is a powerful, extensively used model to address these biological questions. A remaining bottleneck relates to the difficulty to obtain comprehensive tissue-specific gene transcri...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.120.303774

    authors: Gómez-Saldivar G,Osuna-Luque J,Semple JI,Glauser DA,Jarriault S,Meister P

    更新日期:2020-12-01 00:00:00

  • A non-Mendelian MAPK-generated hereditary unit controlled by a second MAPK pathway in Podospora anserina.

    abstract::The Podospora anserina PaMpk1 MAP kinase (MAPK) signaling pathway can generate a cytoplasmic and infectious element resembling prions. When present in the cells, this C element causes the crippled growth (CG) cell degeneration. CG results from the inappropriate autocatalytic activation of the PaMpk1 MAPK pathway durin...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.112.139469

    authors: Lalucque H,Malagnac F,Brun S,Kicka S,Silar P

    更新日期:2012-06-01 00:00:00

  • KRB1, a suppressor of mak7-1 (a mutant RPL4A), is RPL4B, a second ribosomal protein L4 gene, on a fragment of Saccharomyces chromosome XII.

    abstract::The mak7-1 mutant loses the killer toxin-encoding M1 dsRNA. MAK7 is RPL4A, one of two genes encoding ribosomal protein L4. KRB1 is a dominant suppressor of mak7-1 that is tightly centromerelinked, but not linked to centromere markers of chromosomes I-XVI. Our orthogonal field agarose gel electrophoresis analysis of ch...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Ohtake Y,Wickner RB

    更新日期:1995-05-01 00:00:00

  • Why are there still over 1000 uncharacterized yeast genes?

    abstract::The yeast genetics community has embraced genomic biology, and there is a general understanding that obtaining a full encyclopedia of functions of the approximately 6000 genes is a worthwhile goal. The yeast literature comprises over 40,000 research papers, and the number of yeast researchers exceeds the number of gen...

    journal_title:Genetics

    pub_type: 杂志文章,评审

    doi:10.1534/genetics.107.074468

    authors: Peña-Castillo L,Hughes TR

    更新日期:2007-05-01 00:00:00