High frequency of mutations that expand the host range of an RNA virus.

Abstract:

:The ability of a virus population to colonize a novel host is predicted to depend on the equilibrium frequency of potential colonists (i.e., genotypes capable of infecting the novel host) in the source population. In this study, we investigated the determinants of the equilibrium frequency of potential colonists in the RNA bacteriophage 6. We isolated 40 spontaneous mutants capable of infecting a novel Pseudomonas syringae host and sequenced their host attachment genes to identify the responsible mutations. We observed 16 different mutations in the host attachment gene and used a new statistical approach to estimate that 39 additional mutations were missed by our screen. Phenotypic and fitness assays confirmed that the proximate mechanism underlying host range expansion was an increase in the ability to attach to the novel host and that acquisition of this ability most often imposed a cost for growth rate on two standard hosts. Considered in a population genetic framework, our data suggest that host range mutations should exist in phage populations at an equilibrium frequency (3 x 10(-4)) that exceeds the phage mutation rate by more than two orders of magnitude. Thus, colonization of novel hosts is unlikely to be limited by an inability to produce appropriate mutations.

journal_name

Genetics

journal_title

Genetics

authors

Ferris MT,Joyce P,Burch CL

doi

10.1534/genetics.106.064634

subject

Has Abstract

pub_date

2007-06-01 00:00:00

pages

1013-22

issue

2

eissn

0016-6731

issn

1943-2631

pii

genetics.106.064634

journal_volume

176

pub_type

杂志文章

相关文献

GENETICS文献大全
  • Covariances between Arbitrary Relatives in Autotetraploids with Panmictic Disequilibrium.

    abstract::In random mating autopolyploid populations which have not reached equilibrium, two alleles may be interdependent as a result of the phenomenon of gametic recombination, i.e. the maintenance through successive gamete generations of an association of two alleles from the same gamete in a source reference generation. Any...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Gallais A

    更新日期:1974-03-01 00:00:00

  • Organization of the large mitochondrial genome in the isopod Armadillidium vulgare.

    abstract::The mitochondrial DNA (mtDNA) in animals is generally a circular molecule of approximately 15 kb, but there are many exceptions such as linear molecules and larger ones. RFLP studies indicated that the mtDNA in the terrestrial isopod Armadillidium vulgare varied from 20 to 42 kb. This variation depended on the restric...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Raimond R,Marcadé I,Bouchon D,Rigaud T,Bossy JP,Souty-Grosset C

    更新日期:1999-01-01 00:00:00

  • Estimating differential reproductive success from nests of related individuals, with application to a study of the mottled sculpin, Cottus bairdi.

    abstract::Understanding how variation in reproductive success is related to demography is a critical component in understanding the life history of an organism. Parentage analysis using molecular markers can be used to estimate the reproductive success of different groups of individuals in natural populations. Previous models h...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.067066

    authors: Jones B,Grossman GD,Walsh DC,Porter BA,Avise JC,Fiumera AC

    更新日期:2007-08-01 00:00:00

  • eEF1A Controls ascospore differentiation through elevated accuracy, but controls longevity and fruiting body formation through another mechanism in Podospora anserina.

    abstract::Antisuppressor mutations in the eEF1A gene of Podospora anserina were previously shown to impair ascospore formation, to drastically increase life span, and to permit the development of the Crippled Growth degenerative process. Here, we show that eEF1A controls ascospore formation through accuracy level maintenance. E...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Silar P,Lalucque H,Haedens V,Zickler D,Picard M

    更新日期:2001-08-01 00:00:00

  • Artificial and epigenetic regulation of the I factor, a nonviral retrotransposon of Drosophila melanogaster.

    abstract::The I factor (IF) is a LINE-like transposable element from Drosophila melanogaster. IF is silenced in most strains, but under special circumstances its transposition can be induced and correlates with the appearance of a syndrome of female sterility called hybrid dysgenesis. To elucidate the relationship between IF ex...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Gauthier E,Tatout C,Pinon H

    更新日期:2000-12-01 00:00:00

  • Hydroxyurea Induces Cytokinesis Arrest in Cells Expressing a Mutated Sterol-14α-Demethylase in the Ergosterol Biosynthesis Pathway.

    abstract::Hydroxyurea (HU) has been used for the treatment of multiple diseases, such as cancer. The therapeutic effect is generally believed to be due to the suppression of ribonucleotide reductase (RNR), which slows DNA polymerase movement at replication forks and induces an S phase cell cycle arrest in proliferating cells. A...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.116.191536

    authors: Xu YJ,Singh A,Alter GM

    更新日期:2016-11-01 00:00:00

  • Triple mutants uncover three new genes required for social motility in Myxococcus xanthus.

    abstract::The bacterium Myxococcus xanthus glides over surfaces using two different locomotive mechanisms, called S (social) and A (adventurous) motility that enable cells to move both as groups and as individuals. Neither mechanism involves flagella. The functions of these two motors are coordinated by the activity of a small ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.076182

    authors: Youderian P,Hartzell PL

    更新日期:2007-09-01 00:00:00

  • Testing neutrality in subdivided populations.

    abstract::Statistical tests of the neutrality hypothesis that are based on the sampling theory of Ewens (1972) require the assumption of panmixia. It is proposed that for a population comprising numerous local populations with weak gene flow among them, tests based on Ewens' theory can be applied separately to samples from each...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Slatkin M

    更新日期:1982-03-01 00:00:00

  • Impact of Chromosome Fusions on 3D Genome Organization and Gene Expression in Budding Yeast.

    abstract::The three-dimensional (3D) organization of chromosomes can influence transcription. However, the frequency and magnitude of these effects remain debated. To determine how changes in chromosome positioning affect transcription across thousands of genes with minimal perturbation, we characterized nuclear organization an...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.119.302978

    authors: Di Stefano M,Di Giovanni F,Pozharskaia V,Gomar-Alba M,Baù D,Carey LB,Marti-Renom MA,Mendoza M

    更新日期:2020-03-01 00:00:00

  • Multigene family of ribosomal DNA in Drosophila melanogaster reveals contrasting patterns of homogenization for IGS and ITS spacer regions. A possible mechanism to resolve this paradox.

    abstract::The multigene family of rDNA in Drosophila reveals high levels of within-species homogeneity and between-species diversity. This pattern of mutation distribution is known as concerted evolution and is considered to be due to a variety of genomic mechanisms of turnover (e.g., unequal crossing over and gene conversion) ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Polanco C,González AI,de la Fuente,Dover GA

    更新日期:1998-05-01 00:00:00

  • Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking.

    abstract::The genomic prediction of phenotypes and breeding values in animals and plants has developed rapidly into its own research field. Results of genomic prediction studies are often difficult to compare because data simulation varies, real or simulated data are not fully described, and not all relevant results are reporte...

    journal_title:Genetics

    pub_type: 杂志文章,评审

    doi:10.1534/genetics.112.147983

    authors: Daetwyler HD,Calus MP,Pong-Wong R,de Los Campos G,Hickey JM

    更新日期:2013-02-01 00:00:00

  • Quantitative trait loci for the circadian clock in Neurospora crassa.

    abstract::Neurospora crassa has been a model organism for the study of circadian clocks for the past four decades. Among natural accessions of Neurospora crassa, there is significant variation in clock phenotypes. In an attempt to investigate natural allelic variants contributing to quantitative variation, we used a quantitativ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.077958

    authors: Kim TS,Logsdon BA,Park S,Mezey JG,Lee K

    更新日期:2007-12-01 00:00:00

  • Inheritance and mapping of Compact (Cmpt), a new mutation causing hypermuscularity in mice.

    abstract::During selection for protein content in mice at the Technical University of Berlin, individuals showing high protein content and a compact exterior were noted. Animals showing this "Compact" phenotype were separated to form a new line. The present investigations were carried out on a Hungarian subpopulation of this li...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Varga L,Szabó G,Darvasi A,Müller G,Sass M,Soller M

    更新日期:1997-10-01 00:00:00

  • Raw mediates antagonism of AP-1 activity in Drosophila.

    abstract::High baselines of transcription factor activities represent fundamental obstacles to regulated signaling. Here we show that in Drosophila, quenching of basal activator protein 1 (AP-1) transcription factor activity serves as a prerequisite to its tight spatial and temporal control by the JNK (Jun N-terminal kinase) si...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.086298

    authors: Bates KL,Higley M,Letsou A

    更新日期:2008-04-01 00:00:00

  • Lethal mutagenesis in viruses and bacteria.

    abstract::In this work we study how mutations that change physical properties of cell proteins (stability) affect population survival and growth. We present a model in which the genotype is presented as a set folding free energies of cell proteins. Mutations occur upon replication, so stabilities of some proteins in daughter ce...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.109.106492

    authors: Chen P,Shakhnovich EI

    更新日期:2009-10-01 00:00:00

  • Duplicated genes producing transposable controlling elements for the mating-type differentiation in Saccharomyces cerevisiae.

    abstract::Mutation of the two homothallic genes, HML alpha/HMLa and HMRa/HMR alpha, in homothallic strains of Saccharomyces cerevisiae was studied. Of 11 mutants of the HML alpha gene, eight were due to a phenotypic mutation from HML alpha to HMLa, i.e., a mutation causing a change in function of the original HML allele to that...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Oshima T,Takano I

    更新日期:1980-04-01 00:00:00

  • Perfect simulation from nonneutral population genetic models: variable population size and population subdivision.

    abstract::We show how the idea of monotone coupling from the past can produce simple algorithms for simulating samples at a nonneutral locus under a range of demographic models. We specifically consider a biallelic locus and either a general variable population size mode or a general migration model for population subdivision. ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.060681

    authors: Fearnhead P

    更新日期:2006-11-01 00:00:00

  • Mismatch Repair Incompatibilities in Diverse Yeast Populations.

    abstract::An elevated mutation rate can provide cells with a source of mutations to adapt to changing environments. We identified a negative epistatic interaction involving naturally occurring variants in the MLH1 and PMS1 mismatch repair (MMR) genes of Saccharomyces cerevisiae We hypothesized that this MMR incompatibility, cre...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.116.199513

    authors: Bui DT,Friedrich A,Al-Sweel N,Liti G,Schacherer J,Aquadro CF,Alani E

    更新日期:2017-04-01 00:00:00

  • A method for estimating the mutation, gene conversion and recombination parameters in small multigene families.

    abstract::A simple two-locus gene conversion model is considered to investigate the amounts of DNA variation and linkage disequilibrium in small multigene families. The exact solutions for the expectations and variances of the amounts of variation within and between two loci are obtained. It is shown that gene conversion increa...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Innan H

    更新日期:2002-06-01 00:00:00

  • The Role of the UNC-82 Protein Kinase in Organizing Myosin Filaments in Striated Muscle of Caenorhabditis elegans.

    abstract::We study the mechanisms that guide the formation and maintenance of the highly ordered actin-myosin cytoskeleton in striated muscle. The UNC-82 kinase of Caenorhabditis elegans is orthologous to mammalian kinases ARK5/NUAK1 and SNARK/NUAK2. UNC-82 localizes to the M-line, and is required for proper organization of thi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.116.193029

    authors: Schiller NR,Duchesneau CD,Lane LS,Reedy AR,Manzon ER,Hoppe PE

    更新日期:2017-03-01 00:00:00

  • No Cost of Complexity in Bacteriophages Adapting to a Complex Environment.

    abstract::A long-standing prediction in evolutionary biology is that organisms experience a so-called "cost of complexity" manifested as a decreasing rate of adaptation in populations as organisms or selective environments become increasingly complex. This theory assumes the ubiquity of antagonistic pleiotropy, or trade-offs in...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.119.302029

    authors: Sackman AM,Rokyta DR

    更新日期:2019-05-01 00:00:00

  • Does Chi give or take?

    abstract::In lytic cycle crosses with Red-Gam-lambda phage, particles were examined that had undergone an Int-mediated exchange. It was assumed that this exchange dimerized the circular lambda, making it packageable. Among these Int-mediated recombinants, particles were identified that had, in addition, enjoyed a close double e...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Stahl FW,Lieb M,Stahl MM

    更新日期:1984-12-01 00:00:00

  • In vivo characterization of the nonessential budding yeast anaphase-promoting complex/cyclosome components Swm1p, Mnd2p and Apc9p.

    abstract::We have examined the in vivo requirement of two recently identified nonessential components of the budding yeast anaphase-promoting complex, Swm1p and Mnd2p, as well as that of the previously identified subunit Apc9p. swm1Delta mutants exhibit synthetic lethality or conditional synthetic lethality with other APC/C sub...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.040105

    authors: Page AM,Aneliunas V,Lamb JR,Hieter P

    更新日期:2005-07-01 00:00:00

  • Conservative intrachromosomal recombination between inverted repeats in mouse cells: association between reciprocal exchange and gene conversion.

    abstract::Recombination in mammalian cells is thought to involve both reciprocal and nonreciprocal modes of exchange, although rigorous proof is lacking due to the inability to recover all products of an exchange. To investigate further the relationship between these modes of exchange, we have analyzed intrachromosomal recombin...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Bollag RJ,Liskay RM

    更新日期:1988-05-01 00:00:00

  • Cryptic operon for beta-glucoside metabolism in Escherichia coli K12: genetic evidence for a regulatory protein.

    abstract::Escherichia coli K12 does not metabolize beta-glucosides such as arbutin and salicin because of lack of expression of the bglBSRC operon, which contains structural genes for transport (bglC) and hydrolysis (bglB) of phospho-beta-glucosides. Mutants carrying lesions in the cis-acting regulatory site bglR metabolize bet...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Defez R,De Felice M

    更新日期:1981-01-01 00:00:00

  • Molecular genetic analysis of Chd3 and polytene chromosome region 76B-D in Drosophila melanogaster.

    abstract::The Drosophila melanogaster Chd3 gene encodes a member of the CHD group of SNF2/RAD54 ATPases. CHD proteins are conserved from yeast to man and many are subunits of chromatin-remodeling complexes that facilitate transcription. Drosophila CHD3 proteins are not found in protein complexes, but as monomers that remodel ch...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.110.115121

    authors: Cooper MT,Conant AW,Kennison JA

    更新日期:2010-07-01 00:00:00

  • Substitution rates in Drosophila nuclear genes: implications for translational selection.

    abstract::The relationships between synonymous and nonsynonymous substitution rates and between synonymous rate and codon usage bias are important to our understanding of the roles of mutation and selection in the evolution of Drosophila genes. Previous studies used approximate estimation methods that ignore codon bias. In this...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Dunn KA,Bielawski JP,Yang Z

    更新日期:2001-01-01 00:00:00

  • Genetic divergence in mandible form in relation to molecular divergence in inbred mouse strains.

    abstract::Genetic divergence in the form of the mandible is examined in ten inbred strains of mice. Several univariate and multivariate genetic distance estimates are given for the morphological data and these estimates are compared to measures of genealogical and molecular divergence. Highly significant divergence occurs among...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Atchley WR,Newman S,Cowley DE

    更新日期:1988-09-01 00:00:00

  • Molecular-genetic characterization of CMS-S restorer-of-fertility alleles identified in Mexican maize and teosinte.

    abstract::Restorer-of-fertility (Rf) alleles for S-type cytoplasmic male sterility (CMS-S) are prevalent in Mexican races of maize and teosinte. Forty-five Rf alleles from 26 races of maize and 6 Rf alleles from different accessions of teosinte were found to be homozygous viable, consistent with the hypothesis that they are nat...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.166.2.959

    authors: Gabay-Laughnan S,Chase CD,Ortega VM,Zhao L

    更新日期:2004-02-01 00:00:00

  • Evolutionary analyses of DNA sequences subject to constraints of secondary structure.

    abstract::Evolutionary models appropriate for analyzing nucleotide sequences that are subject to constraints on secondary structure are developed. The models consider the evolution of pairs of nucleotides, and they incorporate the effects of base-pairing constraints on nucleotide substitution rates by introducing a new paramete...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Muse SV

    更新日期:1995-03-01 00:00:00