An evolutionary constraint: strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules.

abstract：:The gaseous phytohormone ethylene C(2)H(4) mediates numerous aspects of growth and development. Genetic analysis has identified a number of critical elements in ethylene signaling, but how these elements interact biochemically to transduce the signal from the ethylene receptor complex at the endoplasmic reticulum (ER)...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ju C,Yoon GM,Shemansky JM,Lin DY,Ying ZI,Chang J,Garrett WM,Kessenbrock M,Groth G,Tucker ML,Cooper B,Kieber JJ,Chang C

更新日期：2012-11-20 00:00:00

abstract：:Circadian dysfunction is a common attribute of many neurodegenerative diseases, most of which are associated with neuroinflammation. Circadian rhythm dysfunction has been associated with inflammation in the periphery, but the role of the core clock in neuroinflammation remains poorly understood. Here we demonstrate th...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Griffin P,Dimitry JM,Sheehan PW,Lananna BV,Guo C,Robinette ML,Hayes ME,Cedeño MR,Nadarajah CJ,Ezerskiy LA,Colonna M,Zhang J,Bauer AQ,Burris TP,Musiek ES

更新日期：2019-03-12 00:00:00

abstract：:The Mediator complex forms the bridge between transcriptional activators and RNA polymerase II. Mediator subunit Med1/TRAP220 is a key component of Mediator originally found to associate with nuclear hormone receptors. Med1 deficiency causes lethality at embryonic day 11.5 because of defects in heart and placenta deve...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Stumpf M,Waskow C,Krötschel M,van Essen D,Rodriguez P,Zhang X,Guyot B,Roeder RG,Borggrefe T

更新日期：2006-12-05 00:00:00

abstract：:Malignant B lymphocytes from several patients with chronic lymphocytic leukemia (CLL) were examined for reactivity with murine monoclonal antibody 17.109. This antibody, prepared against the rheumatoid factor (RF) paraprotein Sie, recognizes a crossreactive idiotype on 48% of human IgM RF paraproteins, but does not re...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Kipps TJ,Fong S,Tomhave E,Chen PP,Goldfien RD,Carson DA

更新日期：1987-05-01 00:00:00

abstract：:In the presence of N(alpha),N(epsilon)-diacetyl-L-Lys-D-Ala-D-Ala as donor, and either D-[(14)C]alanine, [(14)C]-glycine, or meso-[(3)H]diaminopimelic acid as acceptor, the DD carboxypeptidases from Streptomyces R61 and R39 catalyze a transpeptidation reaction with the release of terminal D-alanine from the donor and ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Pollock JJ,Ghuysen JM,Linder R,Salton MR,Perkins HR,Nieto M,Leyh-Bouille M,Frere JM,Johnson K

更新日期：1972-03-01 00:00:00

abstract：:Thiopurine S-methyltransferase (TPMT) catalyzes the S-methylation of thiopurine drugs. TPMT genetic polymorphisms represent a striking example of the potential clinical value of pharmacogenetics. Subjects homozygous for TPMT*3A, the most common variant allele for low activity, an allele that encodes a protein with two...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Wang L,Nguyen TV,McLaughlin RW,Sikkink LA,Ramirez-Alvarado M,Weinshilboum RM

更新日期：2005-06-28 00:00:00

abstract：:Discovering the visual features and representations used by the brain to recognize objects is a central problem in the study of vision. Recently, neural network models of visual object recognition, including biological and deep network models, have shown remarkable progress and have begun to rival human performance in...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ullman S,Assif L,Fetaya E,Harari D

更新日期：2016-03-08 00:00:00

abstract：:We established stable COS-7 cell lines overexpressing recombinant PTPMEG and an inactive mutant form in which the active site cysteine is mutated to serine (PTPMEGCS). We found that both endogenous and recombinant enzyme were primarily located in the membrane and cytoskeletal fractions of COS-7 cells. Endogenous PTPME...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Gu M,Meng K,Majerus PW

更新日期：1996-11-12 00:00:00

abstract：:The circadian clock is a global regulatory mechanism that controls the expression of 50 to 80% of transcripts in mammals. Some of the genes controlled by the circadian clock are oncogenes or tumor suppressors. Among these Myc has been the focus of several studies which have investigated the effect of clock genes and p...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Liu Z,Selby CP,Yang Y,Lindsey-Boltz LA,Cao X,Eynullazada K,Sancar A

更新日期：2020-09-01 00:00:00

abstract：:A soluble 27-kDa protein from Saccharomyces cerevisiae specifically prevents the inactivation of various enzymes caused by a nonenzymatic Fe3+/O2/thiol mixed-function oxidation system but not by mixed-function oxidation systems in which the thiol component is replaced by another electron donor-e.g., ascorbate. In this...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Kim IH,Kim K,Rhee SG

更新日期：1989-08-01 00:00:00

abstract：:Meningococcal meningitis remains a substantial cause of mortality and morbidity worldwide. Until recently, countries in the African meningitis belt were susceptible to devastating outbreaks, largely attributed to serogroup A Neisseria meningitidis (MenA). Vaccination with glycoconjugates of MenA capsular polysaccharid...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Henriques P,Dello Iacono L,Gimeno A,Biolchi A,Romano MR,Arda A,Bernardes GJL,Jimenez-Barbero J,Berti F,Rappuoli R,Adamo R

更新日期：2020-11-24 00:00:00

abstract：:Gene expression has a stochastic component because of the single-molecule nature of the gene and the small number of copies of individual DNA-binding proteins in the cell. We show how the statistics of such systems can be mapped onto quantum many-body problems. The dynamics of a single gene switch resembles the spin-b...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Sasai M,Wolynes PG

更新日期：2003-03-04 00:00:00

abstract：:Habituation is a form of simple memory that suppresses neural activity in response to repeated, neutral stimuli. This process is critical in helping organisms guide attention toward the most salient and novel features in the environment. Here, we follow known circuit mechanisms in the fruit fly olfactory system to der...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Shen Y,Dasgupta S,Navlakha S

更新日期：2020-06-02 00:00:00

abstract：:In an earlier paper, the author jointly with S. Suryawanshi proposed statistical analysis of shape through triangulation of landmarks on objects. It was observed that the angles of the triangles are invariant to scaling, location, and rotation of objects. No distinction was made between an object and its reflection. T...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Rao CR

更新日期：2000-03-28 00:00:00

abstract：:rev-regulated expression of HIV-1 envelope proteins from a simian virus 40 late replacement vector was found to be dependent on the presence of a 5' splice site in the env mRNA in spite of the fact that this mRNA remains unspliced. When the 5' splice site upstream of the env open reading frame was deleted or mutated, ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Lu XB,Heimer J,Rekosh D,Hammarskjöld ML

更新日期：1990-10-01 00:00:00

abstract：:We report here that component members of the keratin intermediate filament (IF) type I and type II gene families of sheep are closely linked but apparently the two families are not. Nine genes, accounting for up to half of the keratin IF gene repertoire, were mapped in four cosmid clones and the linkage between the ge...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Powell BC,Cam GR,Fietz MJ,Rogers GE

更新日期：1986-07-01 00:00:00

abstract：:The highly selective alpha 1-adrenergic receptor antagonist prazosin was used to identify binding sites having alpha-adrenergic specificity in rat hepatic plasma membranes. Solubilization of the membrane-bound receptors was achieved by incubation with the nonionic detergent digitonin, and binding activity was assayed ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Graham RM,Hess HJ,Homcy CJ

更新日期：1982-04-01 00:00:00

abstract：:The mechanism of phospholipase C regulation by inhibitory receptors was analyzed both in intact and in permeabilized rat thyroid cells (FRTL5). In this system, the muscarinic agonist carbachol inhibited phospholipase C, as indicated by the decrease in the basal levels of inositol 1,4,5-trisphosphate as well as by the ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Bizzarri C,Di Girolamo M,D'Orazio MC,Corda D

更新日期：1990-06-01 00:00:00

abstract：:Chromatin remodeling complexes have been implicated in the disruption or reformation of nucleosomal arrays resulting in modulation of transcription, DNA replication, and DNA repair. Here we report the isolation of WCRF, a new chromatin-remodeling complex from HeLa cells. WCRF is composed of two subunits, WCRF135, the ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Bochar DA,Savard J,Wang W,Lafleur DW,Moore P,Côté J,Shiekhattar R

更新日期：2000-02-01 00:00:00

abstract：:Initiation of DNA replication has been observed in vitro with a DNA-membrane complex extracted from Bacillus subtilis. Antibiotics known to interfere with various aspects of initiation inhibited DNA synthesis significantly in vitro, whereas a mutant resistant to one inhibitor failed to respond to its presence. The inh...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Benjamin P,Firshein W

更新日期：1983-10-01 00:00:00

abstract：:C factor, an intercellular signaling protein, is required for aggregation and sporulation of the social bacterium, Myxococcus xanthus. We report that C factor, which normally is associated with the cell surface, provides input to the Frz signal transduction cascade. Elements of this cascade have sequence homology to b...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Søgaard-Andersen L,Kaiser D

更新日期：1996-04-02 00:00:00

abstract：:Ligand-specific molecular switches composed of RNA were created by coupling preexisting catalytic and receptor domains via structural bridges. Binding of ligand to the receptor triggers a conformational change within the bridge, and this structural reorganization dictates the activity of the adjoining ribozyme. The mo...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Soukup GA,Breaker RR

更新日期：1999-03-30 00:00:00

abstract：:Alzheimer's disease is a neurodegenerative disorder characterized by the accumulation of amyloid plaques in the brain. This amyloid primarily contains amyloid-beta (Abeta), a 39- to 43-aa peptide derived from the proteolytic cleavage of the endogenous amyloid precursor protein. The 42-residue-length Abeta peptide (Abe...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Zhang R,Hu X,Khant H,Ludtke SJ,Chiu W,Schmid MF,Frieden C,Lee JM

更新日期：2009-03-24 00:00:00

abstract：:Members of the polo subfamily of protein kinases play pivotal roles in cell-cycle control and proliferation. In addition to a high degree of sequence similarity in the kinase domain, polo kinases contain a strikingly conserved motif termed "polo-box" in the noncatalytic C-terminal domain. We have previously shown that...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Lee KS,Song S,Erikson RL

更新日期：1999-12-07 00:00:00

abstract：:Listeriolysin O (LLO) is a cholesterol-dependent cytolysin that is an essential virulence factor of Listeria monocytogenes. LLO pore-forming activity is pH-dependent; it is active at acidic pH (<6), but not at neutral pH. In contrast to other pH-dependent toxins, we have determined that LLO pore-forming activity is co...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Schuerch DW,Wilson-Kubalek EM,Tweten RK

更新日期：2005-08-30 00:00:00

abstract：:Human populations have undergone dramatic expansions in size, but other than the growth associated with agriculture, the dates and magnitudes of those expansions have never been resolved. Here, we introduce two new statistical tests for population expansion, which use variation at a number of unlinked genetic markers ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Reich DE,Goldstein DB

更新日期：1998-07-07 00:00:00

abstract：:Plasma norepinephrine and dopamine beta-hydroxylase (EC 1.14.17.1) activity were measured in rats. Adrenergic neuron blockade with bretylium for 4 hr and ganglion blockade with chlorisondamine for 72 hr lowered plasma norepinephrine. Neither treatment altered plasma dopamine beta-hydroxylase activity. Phenoxybenzamine...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Reid JL,Kopin IJ

更新日期：1974-11-01 00:00:00

abstract：:A cyclic hexapeptide, cyclo(Pro-Gly-Pro-Gly-Pro-Gly), has been synthesized; its solution conformations were examined by 220-MHz nuclear magnetic resonance spectroscopy. The solution structures have been deduced, and shown to vary as a function of solvent polarity. In addition, it has been found that this cyclic peptid...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Deber CM,Torchia DA,Wong SC,Blout ER

更新日期：1972-07-01 00:00:00

abstract：:During the development of a macronucleus from a micronucleus after cell mating in hypotrichs all the genes (approximately 20,000) are excised from micronuclear chromosomes as individual small DNA molecules. Telomeres are added to the ends of each gene-sized molecule and each is amplified, mostly by approximately 1000-...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Greslin AF,Prescott DM,Oka Y,Loukin SH,Chappell JC

更新日期：1989-08-01 00:00:00

abstract：:Striatal enkephalin and dynorphin opioid systems mediate reward and negative affect, respectively, relevant to addiction disorders. We examined polymorphisms of proenkephalin (PENK) and prodynorphin (PDYN) genes in relation to heroin abuse and gene expression in the human striatum and the relevance of genetic dopamine...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Nikoshkov A,Drakenberg K,Wang X,Horvath MC,Keller E,Hurd YL

更新日期：2008-01-15 00:00:00