Adaptation to DNA damage and stimulation of genetic instability: the double-edged sword mammalian DNA polymerase kappa.

Abstract:

:A major tolerance mechanism that functions to replicate damaged genomic DNA across lesions that have escaped elimination by repair mechanism is translesion DNA synthesis (TLS). DNA polymerase kappa (Pol kappa), a specialised low-fidelity DNA polymerase which is able to perform DNA synthesis across several damaged bases, is one of the enzymes involved in the process. The mutagenic nature of Pol kappa implies that its expression must be tightly regulated to prevent the formation of excessive genetic disorders along undamaged parts of the genome. Indeed, Pol kappa overexpression, which is notably observed in lung cancer, results not only in increased spontaneous mutagenesis, but also in pleiotropic alterations such as DNA breaks, genetic exchanges and aneuploidy. This review will discuss both aspects of DNA polymerase kappa, which can be considered as a genomic supervisor participating in genome maintenance and when misregulated as a genetic instability enhancer as well.

journal_name

Biochimie

journal_title

Biochimie

authors

Bavoux C,Hoffmann JS,Cazaux C

doi

10.1016/j.biochi.2005.02.007

keywords:

subject

Has Abstract

pub_date

2005-07-01 00:00:00

pages

637-46

issue

7

eissn

0300-9084

issn

1638-6183

pii

S0300-9084(05)00045-3

journal_volume

87

pub_type

杂志文章,评审
  • Kinetic studies of Rhizopus oryzae lipase using monomolecular film technique.

    abstract::Rhizopus oryzae lipase (ROL) was found to be a true lipase. This enzyme presents the interfacial activation phenomenon. The N-terminal amino acid sequence of ROL was compared to those of rhizopus lipases. Purified ROL possesses the same N-terminal sequence as the mature Rhizopus niveus lipase (RNL). This sequence was ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(01)01283-4

    authors: Ben Salah A,Sayari A,Verger R,Gargouri Y

    更新日期:2001-06-01 00:00:00

  • How botulinum and tetanus neurotoxins block neurotransmitter release.

    abstract::Botulinum neurotoxins (BoNT, serotypes A-G) and tetanus neurotoxin (TeNT) are bacterial proteins that comprise a light chain (M(r) approximately 50) disulfide linked to a heavy chain (M(r) approximately 100). By inhibiting neurotransmitter release at distinct synapses, these toxins cause two severe neuroparalytic dise...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(00)00216-9

    authors: Humeau Y,Doussau F,Grant NJ,Poulain B

    更新日期:2000-05-01 00:00:00

  • Borrelia burgdorferi infection induces lipid mediator production during Lyme arthritis.

    abstract::Experimental Lyme arthritis provides a mouse model for exploring the development of pathology following infection of C3H mice with Borrelia burgdorferi. Infected mice develop a reliable inflammatory arthritis of the ankle joint with severity that typically peaks around two to three weeks post-infection and then underg...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2017.06.010

    authors: Brown CR,Dennis EA

    更新日期:2017-10-01 00:00:00

  • Fate of mRNA extremities generated by intrinsic termination: detailed analysis of reactions catalyzed by ribonuclease II and poly(A) polymerase.

    abstract::In all living cells 3' ends of RNA are posttranscriptionally elongated or shortened by nucleotidyl transferases and ribonucleases. The detailed analysis of the rpsO mRNA of Escherichia coli presented here demonstrates that transcription terminates in vivo at two sites located seven and eight nucleotides downstream fro...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2005.02.012

    authors: Folichon M,Marujo PE,Arluison V,Le Derout J,Pellegrini O,Hajnsdorf E,Régnier P

    更新日期:2005-09-01 00:00:00

  • Diacylglycerol kinase η regulates C2C12 myoblast proliferation through the mTOR signaling pathway.

    abstract::Diacylglycerol kinase (DGK) phosphorylates diacylglycerol to produce phosphatidic acid (PA). The η isozyme of DGK is abundantly expressed in C2C12 myoblasts. However, the role of DGKη in skeletal muscle cells remains unknown. In the present study, we showed that DGKη was downregulated at an early stage of myogenic dif...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2020.07.018

    authors: Sakai H,Murakami C,Usuki T,Lu Q,Matsumoto KI,Urano T,Sakane F

    更新日期:2020-10-01 00:00:00

  • Conformation in solution of yeast tRNA(Asp) transcripts deprived of modified nucleotides.

    abstract::A synthetic gene of yeast aspartic acid tRNA with a promoter for phage T7 RNA polymerase was cloned in Escherichia coli. The in vitro transcribed tRNA(Asp) molecules are deprived of modified nucleotides and retain their aspartylation capacity. The solution conformation of these molecules was mapped with chemical struc...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(90)90158-d

    authors: Perret V,Garcia A,Puglisi J,Grosjean H,Ebel JP,Florentz C,Giegé R

    更新日期:1990-10-01 00:00:00

  • Denitrification and nitrite reduction: Pseudomonas aeruginosa nitrite-reductase.

    abstract::Present knowledge of the different enzymatic steps of the denitrification chains in various bacteria, particularly Paracoccus denitrificans and Pseudomonas aeruginosa has been briefly reviewed. The question whether nitric oxide (NO), nitrous oxide (N2O) and other nitrogen derivatives are obligatory intermediates has b...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/0300-9084(84)90005-1

    authors: Henry Y,Bessières P

    更新日期:1984-04-01 00:00:00

  • Eukaryotic extracellular catalase-peroxidase from Magnaporthe grisea - Biophysical/chemical characterization of the first representative from a novel phytopathogenic KatG group.

    abstract::All phytopathogenic fungi have two catalase-peroxidase paralogues located either intracellularly (KatG1) or extracellularly (KatG2). Here, for the first time a secreted bifunctional, homodimeric catalase-peroxidase (KatG2 from the rice blast fungus Magnaporthe grisea) has been produced heterologously with almost 100% ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2011.09.020

    authors: Zámocký M,Droghetti E,Bellei M,Gasselhuber B,Pabst M,Furtmüller PG,Battistuzzi G,Smulevich G,Obinger C

    更新日期:2012-03-01 00:00:00

  • The mechanics of DNA loops bridged by proteins unveiled by single-molecule experiments.

    abstract::Protein-induced DNA bridging and looping is a common mechanism for various and essential processes in bacterial chromosomes. This mechanism is preserved despite the very different bacterial conditions and their expected influence on the thermodynamic and kinetic characteristics of the bridge formation and stability. O...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2017.08.002

    authors: Tardin C

    更新日期:2017-11-01 00:00:00

  • L-lactate oxidase from Aerococcus viridans crystallized as an octamer. Preliminary X-ray studies.

    abstract::Crystals of flavoenzyme L-lactate oxidase from Aerococcus viridans (LOX) have been obtained that diffract to 3.0 A resolution (P2(1)2(1)2(1), a = 118.4 A, b = 138.4 A, c = 194.6 A). Crystallographic studies suggest that the enzyme may exist as an octameric form with non-crystallographic two- and four-fold axes in the ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(98)80072-2

    authors: Morimoto Y,Yorita K,Aki K,Misaki H,Massey V

    更新日期:1998-04-01 00:00:00

  • Formation of protein complexes containing plant virus movement protein TGBp3 is necessary for its intracellular trafficking.

    abstract::Cell-to-cell movement of Poa semilatent virus (genus Hordeivirus) in infected plants is mediated by three viral 'triple gene block' (TGB) proteins. One of those termed TGBp3 is an integral membrane protein essential for intracellular transport of other TGB proteins and viral genomic RNA to plasmodesmata. TGBp3 targeti...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2011.01.002

    authors: Shemyakina EA,Erokhina TN,Gorshkova EN,Schiemann J,Solovyev AG,Morozov SY

    更新日期:2011-04-01 00:00:00

  • Artificial intelligence approach in analysis of DNA sequences.

    abstract::We present an approach for designing a knowledge-based system, called Sequence Acquisition In Context (SAIC), that will be able to cooperate with a biologist in the analysis of DNA sequences. The main task of the system is the acquisition of the expert knowledge that the biologist uses for solving ambiguities from gel...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(93)90167-q

    authors: Brézillon PJ,Zaraté P,Saci F

    更新日期:1993-01-01 00:00:00

  • Purification and biochemical characterization of a lysosomal α-fucosidase from the deuterostomia Asterias rubens.

    abstract::In vertebrates, mannose 6-phosphate receptors [MPR300 (Mr 300 kDa) and MPR46 (Mr 46 kDa)] are highly conserved transmembrane glycoproteins that mediate transport of lysosomal enzymes to lysosomes. Our studies have revealed the appearance of these putative receptors in invertebrates such as the molluscs and deuterostom...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2012.02.007

    authors: Visa M,Hammer E,Völker U,Koliwer-Brandl H,Kelm S,Nadimpalli SK

    更新日期:2012-05-01 00:00:00

  • Insights into the degradation of human elastin by matrilysin-1.

    abstract::Human matrilysin-1 (MMP-7) is one of the most potent elastases besides macrophage elastase in the family of matrix metalloproteinases (MMPs). It has been reported to provide macrophages with the highest elastinolytic capacity and plays key roles in diseases such as emphysema and cancer. Describing the enzymatic turnov...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2010.09.011

    authors: Heinz A,Taddese S,Sippl W,Neubert RH,Schmelzer CE

    更新日期:2011-02-01 00:00:00

  • Artefactual cleavage of E coli H-NS by OmpT.

    abstract::In the bacterium Escherichia coli, H-NS-(H1, H1a) is a heat-stable protein with a molecular mass of 15.5 kDa involved in nucleoid organisation and gene regulation linked to certain signal transduction pathways. We have shown that, following addition of preparations of everted inner membrane vesicles, heat-stable cleav...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(97)80025-9

    authors: Goldberg MD,Canvin JR,Freestone P,Andersen C,Laoudj D,Williams PH,Holland IB,Norris V

    更新日期:1997-06-01 00:00:00

  • Sticholysin II-mediated cytotoxicity involves the activation of regulated intracellular responses that anticipates cell death.

    abstract::Sticholysin II (StII) is a pore-forming toxin of biomedical interest that belongs to the actinoporin protein family. Sticholysins are currently under examination as an active immunomodulating component of a vaccinal platform against tumoral cells and as a key element of a nucleic acids delivery system to cell cytosol....

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2018.02.006

    authors: Soto C,Bergado G,Blanco R,Griñán T,Rodríguez H,Ros U,Pazos F,Lanio ME,Hernández AM,Álvarez C

    更新日期:2018-05-01 00:00:00

  • Lipidomic approaches to the study of phospholipase A2-regulated phospholipid fatty acid incorporation and remodeling.

    abstract::The distribution of fatty acids among cellular glycerophospholipids is finely regulated by the CoA-dependent acylation of lysophospholipids followed by transacylation reactions. Arachidonic acid is the fatty acid precursor of a wide family of bioactive compounds called the eicosanoids, with key roles in innate immunit...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2009.11.010

    authors: Balgoma D,Montero O,Balboa MA,Balsinde J

    更新日期:2010-06-01 00:00:00

  • An investigation into the ability of C-terminal homologues of Escherichia coli low molecular mass penicillin-binding proteins 4, 5 and 6 to undergo membrane interaction.

    abstract::The Escherichia coli low molecular mass penicillin-binding proteins (PBP4, PBP5 and PBP6) are a group of penicillin-sensitive enzymes involved in the final stages of cell wall assembly. It has been suggested that these proteins may interact with the periplasmic face of the inner membrane via C-terminal amphiphilic alp...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(97)83502-x

    authors: Harris F,Phoenix DA

    更新日期:1997-04-01 00:00:00

  • Characteristics of the interaction of a treponemal hemolysin with rabbit erythrocytes.

    abstract::The mechanism of action on rabbit red cells of Treponema hyodysenteriae hemolysin was studied using volume analysis and release of hemoglobin. While fixation of the hemolysin on the erythrocytes is temperature independent, it appears that hemolysis is temperature dependent. The kinetics of hemolysis proceed according ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(80)80134-9

    authors: Saheb SA,Lafleur L

    更新日期:1980-01-01 00:00:00

  • tRNAs as primer of reverse transcriptases.

    abstract::Genetic elements coding for proteins that present amino acid identity with the conserved motifs of retroviral reverse transcriptases constitute the retroid family. With the exception of reverse transcriptases encoded by mitochondrial plasmids of Neurospora, all reverse transcriptases have an absolute requirement for a...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/0300-9084(96)88114-4

    authors: Marquet R,Isel C,Ehresmann C,Ehresmann B

    更新日期:1995-01-01 00:00:00

  • An interfacial and comparative in vitro study of gastrointestinal lipases and Yarrowia lipolytica LIP2 lipase, a candidate for enzyme replacement therapy.

    abstract::Lipolytic activities of Yarrowia lipolytica LIP2 lipase (YLLIP2), human pancreatic (HPL) and dog gastric (DGL) lipases were first compared using lecithin-stabilized triacylglycerol (TAG) emulsions (Intralipid) at various pH and bile salt concentrations. Like DGL, YLLIP2 was able to hydrolyze TAG droplets covered by a ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2014.03.004

    authors: Bénarouche A,Point V,Carrière F,Cavalier JF

    更新日期:2014-07-01 00:00:00

  • Properties of gamma-aminobutyraldehyde dehydrogenase from Escherichia coli.

    abstract::gamma-Aminobutyraldehyde dehydrogenase from Escherichia coli K-12 has been purified and characterized from cell mutants able to grow in putrescine as the sole carbon and nitrogen source. The enzyme has an Mr of 195,000 +/- 10,000 in its dimeric form with an Mr of 95,000 +/- 1,000 for each subunit, a pH optimum at 5.4 ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(87)90142-8

    authors: Prieto MI,Martin J,Balaña-Fouce R,Garrido-Pertierra A

    更新日期:1987-11-01 00:00:00

  • Conformational features of bradykinin. A circular dichroism study of some peptide fragments and structural analogues of bradykinin.

    abstract::The vasoactive hormone bradykinin, its N-and C-terminal fragments and some structural analogues were studied by Circular Dichroism. Conformational features of the peptide can be detected by comparative analysis of the various CD spectra recorded as a function of aqueous pH, solvent and temperature. It is shown that th...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(79)80316-8

    authors: Lintner K,Fermandjian S,Regoli D

    更新日期:1979-01-01 00:00:00

  • A thioredoxin reductase and/or thioredoxin system-based mechanism for antioxidant effects of ambroxol.

    abstract::Long-term treatment with ambroxol (ABX), a bronchial expectorant, was found to prevent acute exacerbation of chronic obstructive pulmonary disease (AECOPD). The underlying mechanism remains unclear. To address this, we have investigated the effect of ABX on critical antioxidant proteins thioredoxin (Trx) and thioredox...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2013.09.024

    authors: Huang J,Xu J,Tian L,Zhong L

    更新日期:2014-02-01 00:00:00

  • Spatial proximity of a tyrosyl and a lysyl residue in the active site region of yeast 3-phosphoglycerate kinase.

    abstract::The effect of 7-chloro-4-nitrobenzofurazan on yeast 3-phosphoglycerate kinase causes a modification of one tyrosyl residue concomitantly with a total loss of activity of the enzyme. The modification is not accompanied by any significant conformational change. A total protection against inactivation is observed with th...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(79)80164-9

    authors: Roustan C,Fattoum A,Pradel LA

    更新日期:1979-01-01 00:00:00

  • Lipidomic profiling of model organisms and the world's major pathogens.

    abstract::Lipidomics is a subspecialty of metabolomics that focuses on water insoluble metabolites that form membrane barriers. Most lipidomic databases catalog lipids from common model organisms, like humans or Escherichia coli. However, model organisms' lipid profiles show surprisingly little overlap with those of specialized...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2012.08.012

    authors: Layre E,Moody DB

    更新日期:2013-01-01 00:00:00

  • Roles of long, non-coding RNA in chromosome-wide transcription regulation: lessons from two dosage compensation systems.

    abstract::A large part of higher eukaryotic genomes is transcribed into RNAs lacking any significant open reading frame. This "non-coding part" has been shown to actively contribute to regulating gene expression, but the mechanisms are largely unknown. Particularly instructive examples are provided by the dosage compensation sy...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2011.12.026

    authors: Maenner S,Müller M,Becker PB

    更新日期:2012-07-01 00:00:00

  • Amphibian metamorphosis as a model for studying the developmental actions of thyroid hormone.

    abstract::The thyroid hormones L-thyroxine and triiodo-L-thyronine have profound effects on postembryonic development of most vertebrates. Analysis of their action in mammals is vitiated by the exposure of the developing foetus to a number of maternal factors which do not allow one to specifically define the role of thyroid hor...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(99)80082-0

    authors: Tata JR

    更新日期:1999-04-01 00:00:00

  • Anticancer molecule AS1411 exhibits low nanomolar antiviral activity against HIV-1.

    abstract::During clinical trials, a number of fully characterized molecules are dropped along the way because they do not provide enough benefit for the patient. Some of them show limited side effects and might be of great use for other applications. AS1411 is a nucleolin-targeting aptamer that underwent phase II clinical trial...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2015.09.009

    authors: Métifiot M,Amrane S,Mergny JL,Andreola ML

    更新日期:2015-11-01 00:00:00

  • Glutamine induces nuclear degradation of the NF-κB p65 subunit in Caco-2/TC7 cells.

    abstract::In the intestine, NF-κB is the main transcription factor involved in the anti-inflammatory effect of glutamine and we previously demonstrated that glutamine via its conversion to glutamate diminished the p65 protein content in Caco-2/TC7 cell nuclei without affecting the stimulating effect of IL-1β on NF-κB [21]. Howe...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2011.11.012

    authors: Lesueur C,Bôle-Feysot C,Bekri S,Husson A,Lavoinne A,Brasse-Lagnel C

    更新日期:2012-03-01 00:00:00